Wall clock time and date at job start Sun Mar 29 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 H 1.09005 * 109.45050 * 301.42416 * 3 2 1 5 5 C 1.53037 * 109.46629 * 61.39346 * 3 2 1 6 6 C 1.53118 * 109.28083 * 179.19927 * 5 3 2 7 7 C 1.53128 * 109.15691 * 302.34597 * 6 5 3 8 8 C 1.53042 * 109.27886 * 57.65474 * 7 6 5 9 9 N 1.46842 * 109.52297 * 300.82057 * 8 7 6 10 10 C 1.46905 * 110.99990 * 185.84031 * 9 8 7 11 11 C 1.52993 * 109.47125 * 71.09279 * 10 9 8 12 12 C 1.50707 * 115.54855 * 54.10190 * 11 10 9 13 13 H 1.07995 * 119.99768 * 264.35150 * 12 11 10 14 14 C 1.37879 * 119.99751 * 84.35560 * 12 11 10 15 15 N 1.31510 * 119.99928 * 357.98544 * 14 12 11 16 16 Si 1.86805 * 119.99640 * 177.71323 * 14 12 11 17 17 H 1.48502 * 109.46888 * 270.27408 * 16 14 12 18 18 H 1.48500 * 109.47229 * 30.27284 * 16 14 12 19 19 H 1.48493 * 109.46855 * 150.27678 * 16 14 12 20 20 C 1.52996 * 117.50077 * 199.77164 * 11 10 9 21 21 C 1.53000 * 117.50008 * 268.43187 * 11 10 9 22 22 H 1.09000 * 109.47344 * 183.19734 * 1 2 3 23 23 H 1.08997 * 109.47205 * 303.20227 * 1 2 3 24 24 H 1.09003 * 109.47188 * 63.19545 * 1 2 3 25 25 H 1.08999 * 109.47010 * 239.98979 * 2 1 3 26 26 H 1.09001 * 109.46772 * 119.99796 * 2 1 3 27 27 H 1.09004 * 109.50059 * 59.25853 * 5 3 2 28 28 H 1.09002 * 109.50472 * 299.14050 * 5 3 2 29 29 H 1.08996 * 109.52131 * 182.44572 * 6 5 3 30 30 H 1.08995 * 109.57500 * 62.27531 * 6 5 3 31 31 H 1.09000 * 109.50549 * 297.71476 * 7 6 5 32 32 H 1.08998 * 109.53251 * 177.61152 * 7 6 5 33 33 H 1.08993 * 109.46208 * 180.79999 * 8 7 6 34 34 H 1.08997 * 109.45175 * 60.83103 * 8 7 6 35 35 H 1.08996 * 109.46426 * 311.09128 * 10 9 8 36 36 H 1.09003 * 109.46928 * 191.09449 * 10 9 8 37 37 H 0.97000 * 120.00540 * 353.23643 * 15 14 12 38 38 H 1.09001 * 117.50548 * 215.00545 * 20 11 10 39 39 H 1.09004 * 117.49705 * 0.02588 * 20 11 10 40 40 H 1.08998 * 117.50086 * 359.97438 * 21 11 10 41 41 H 1.09006 * 117.50013 * 144.97285 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6558 1.9633 -0.8771 5 6 1.5587 2.1536 1.2668 6 6 2.0881 3.5903 1.2721 7 6 3.6167 3.5630 1.1862 8 6 4.0383 2.8110 -0.0783 9 7 3.5081 1.4423 -0.0351 10 6 4.0077 0.6483 -1.1656 11 6 5.4945 0.3507 -0.9622 12 6 5.8538 -0.3000 0.3488 13 1 6.1865 0.3056 1.1788 14 6 5.7578 -1.6683 0.4884 15 7 5.3150 -2.4016 -0.5094 16 14 6.2638 -2.4812 2.0924 17 1 7.7058 -2.8316 2.0363 18 1 6.0257 -1.5437 3.2192 19 1 5.4623 -3.7145 2.2966 20 6 6.3108 -0.0449 -2.1943 21 6 6.5005 1.3357 -1.5611 22 1 -0.3634 -1.0260 0.0573 23 1 -0.3633 0.5627 0.8599 24 1 -0.3634 0.4634 -0.9173 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.9312 1.6252 2.1445 28 1 0.4690 2.1672 1.2847 29 1 1.7839 4.0871 2.1934 30 1 1.6848 4.1312 0.4161 31 1 4.0215 3.0568 2.0626 32 1 3.9978 4.5834 1.1468 33 1 5.1263 2.7774 -0.1351 34 1 3.6447 3.3255 -0.9548 35 1 3.8724 1.2084 -2.0908 36 1 3.4542 -0.2890 -1.2240 37 1 4.9642 -1.9748 -1.3067 38 1 7.1077 -0.7758 -2.0568 39 1 5.7886 -0.0927 -3.1499 40 1 6.1031 2.1956 -2.1003 41 1 7.4220 1.5135 -1.0067 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:17 Heat of formation + Delta-G solvation = 8.655061 kcal Electronic energy + Delta-G solvation = -18333.524169 eV Core-core repulsion = 15827.248707 eV Total energy + Delta-G solvation = -2506.275463 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06785 -36.53667 -33.64068 -32.45930 -31.64580 -28.80494 -26.22049 -24.63464 -23.94657 -22.32594 -21.27557 -20.28577 -19.17384 -19.11702 -16.43508 -15.46733 -14.67601 -14.49064 -13.95261 -13.75462 -13.63328 -13.45028 -13.01605 -12.91326 -12.35944 -12.26631 -11.96263 -11.44645 -11.25938 -11.04534 -10.83495 -10.75276 -10.66154 -10.40146 -10.37911 -10.27959 -10.02804 -9.96854 -9.59704 -9.24087 -8.41493 -8.29774 -8.09004 -7.36418 -6.14101 -3.84546 3.51748 3.56084 3.71259 4.48127 4.65814 5.08810 5.13963 5.25584 5.28302 5.45367 5.51755 5.54850 5.67858 5.73094 5.81634 5.95179 5.96507 6.01157 6.07941 6.16125 6.21549 6.25241 6.32011 6.34864 6.38868 6.44919 6.48036 6.53921 6.63438 6.66048 6.74574 6.86113 6.87071 6.96682 7.34463 7.40858 7.95416 8.04162 8.48343 8.62992 9.07540 9.85759 11.24205 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.009719 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.216350 B = 2880.245361 C = 3253.101662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.088 3.912 4 H 0.023 0.977 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.116 4.116 8 C 0.061 3.939 9 N -0.503 5.503 10 C 0.092 3.908 11 C 0.036 3.964 12 C -0.533 4.533 13 H 0.050 0.950 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 1.065 2.935 17 H -0.292 1.292 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.182 4.182 21 C -0.203 4.203 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.012 0.988 35 H -0.002 1.002 36 H 0.077 0.923 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 8.695 1.201 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.020 4.020 4 H 0.041 0.959 5 C -0.148 4.148 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.067 4.067 9 N -0.227 5.227 10 C -0.035 4.035 11 C 0.035 3.965 12 C -0.572 4.572 13 H 0.068 0.932 14 C -0.179 4.179 15 N -0.553 5.553 16 Si 0.895 3.105 17 H -0.219 1.219 18 H -0.216 1.216 19 H -0.214 1.214 20 C -0.220 4.220 21 C -0.240 4.240 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.030 0.970 35 H 0.016 0.984 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.883 6.999 2.377 10.100 hybrid contribution -0.441 1.941 -1.644 2.581 sum -7.323 8.940 0.734 11.580 Atomic orbital electron populations 1.21819 0.96498 1.01262 1.01110 1.21655 0.94355 0.96216 1.03641 1.21557 0.88963 0.95555 0.95957 0.95928 1.21658 0.99116 0.95266 0.98790 1.21563 0.96387 0.96929 1.00706 1.21580 0.95253 0.99021 0.99501 1.22046 1.01021 0.88567 0.95089 1.61649 1.05251 1.11048 1.44705 1.21870 0.97635 0.96159 0.87840 1.19101 0.87168 0.96547 0.93661 1.21098 1.47021 0.93476 0.95576 0.93217 1.25581 0.95245 0.94209 1.02908 1.70688 1.39181 1.38753 1.06693 0.83610 0.76177 0.75580 0.75181 1.21930 1.21569 1.21393 1.22773 1.05017 0.97273 0.96975 1.22917 1.03177 0.92010 1.05884 0.92910 0.92707 0.93505 0.91503 0.90644 0.90995 0.92140 0.92512 0.93013 0.90957 0.92570 0.89885 0.96958 0.98441 0.90476 0.91794 0.89758 0.92026 0.92066 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.68 37.16 0.36 -1.68 16 2 C -0.12 -2.10 5.13 -26.73 -0.14 -2.24 16 3 C 0.09 1.53 1.95 -67.73 -0.13 1.40 16 4 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 5 C -0.11 -1.65 5.03 -26.65 -0.13 -1.78 16 6 C -0.12 -1.63 6.00 -26.60 -0.16 -1.79 16 7 C -0.12 -1.78 6.09 -26.64 -0.16 -1.95 16 8 C 0.06 1.11 5.25 -3.83 -0.02 1.09 16 9 N -0.50 -10.16 4.13 -226.70 -0.94 -11.09 16 10 C 0.09 2.06 4.62 -3.82 -0.02 2.04 16 11 C 0.04 0.88 0.67 -155.66 -0.10 0.77 16 12 C -0.53 -14.63 8.51 -34.44 -0.29 -14.92 16 13 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 14 C 0.02 0.68 5.41 -17.82 -0.10 0.58 16 15 N -0.92 -26.93 13.46 55.43 0.75 -26.18 16 16 Si 1.06 25.53 29.90 -169.99 -5.08 20.45 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.18 -4.28 8.72 -26.70 -0.23 -4.52 16 21 C -0.20 -4.46 8.34 -26.69 -0.22 -4.68 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.68 6.32 -51.93 -0.33 0.35 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.27 5.93 -51.93 -0.31 0.96 16 26 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.64 5.95 -51.93 -0.31 1.33 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.00 -0.05 8.01 -51.93 -0.42 -0.47 16 36 H 0.08 1.83 4.95 -51.93 -0.26 1.57 16 37 H 0.27 7.89 6.17 -40.82 -0.25 7.64 16 38 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -28.60 309.69 -9.28 -37.88 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.32 Total: 1.95 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -1.35 Total: -27.67 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.19 Total: -37.28 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.60 -9.28 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.537 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds