Wall clock time and date at job start Sun Mar 29 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 H 1.09005 * 109.45050 * 301.42416 * 3 2 1 5 5 C 1.53037 * 109.46629 * 61.39346 * 3 2 1 6 6 C 1.53118 * 109.28083 * 179.19927 * 5 3 2 7 7 C 1.53128 * 109.15691 * 302.34597 * 6 5 3 8 8 C 1.53042 * 109.27886 * 57.65474 * 7 6 5 9 9 N 1.46842 * 109.52297 * 300.82057 * 8 7 6 10 10 C 1.46905 * 110.99990 * 185.84031 * 9 8 7 11 11 C 1.52993 * 109.47125 * 71.09279 * 10 9 8 12 12 C 1.50707 * 115.54855 * 54.10190 * 11 10 9 13 13 H 1.07995 * 119.99768 * 264.35150 * 12 11 10 14 14 C 1.37879 * 119.99751 * 84.35560 * 12 11 10 15 15 N 1.31510 * 119.99928 * 357.98544 * 14 12 11 16 16 Si 1.86805 * 119.99640 * 177.71323 * 14 12 11 17 17 H 1.48502 * 109.46888 * 270.27408 * 16 14 12 18 18 H 1.48500 * 109.47229 * 30.27284 * 16 14 12 19 19 H 1.48493 * 109.46855 * 150.27678 * 16 14 12 20 20 C 1.52996 * 117.50077 * 199.77164 * 11 10 9 21 21 C 1.53000 * 117.50008 * 268.43187 * 11 10 9 22 22 H 1.09000 * 109.47344 * 183.19734 * 1 2 3 23 23 H 1.08997 * 109.47205 * 303.20227 * 1 2 3 24 24 H 1.09003 * 109.47188 * 63.19545 * 1 2 3 25 25 H 1.08999 * 109.47010 * 239.98979 * 2 1 3 26 26 H 1.09001 * 109.46772 * 119.99796 * 2 1 3 27 27 H 1.09004 * 109.50059 * 59.25853 * 5 3 2 28 28 H 1.09002 * 109.50472 * 299.14050 * 5 3 2 29 29 H 1.08996 * 109.52131 * 182.44572 * 6 5 3 30 30 H 1.08995 * 109.57500 * 62.27531 * 6 5 3 31 31 H 1.09000 * 109.50549 * 297.71476 * 7 6 5 32 32 H 1.08998 * 109.53251 * 177.61152 * 7 6 5 33 33 H 1.08993 * 109.46208 * 180.79999 * 8 7 6 34 34 H 1.08997 * 109.45175 * 60.83103 * 8 7 6 35 35 H 1.08996 * 109.46426 * 311.09128 * 10 9 8 36 36 H 1.09003 * 109.46928 * 191.09449 * 10 9 8 37 37 H 0.97000 * 120.00540 * 353.23643 * 15 14 12 38 38 H 1.09001 * 117.50548 * 215.00545 * 20 11 10 39 39 H 1.09004 * 117.49705 * 0.02588 * 20 11 10 40 40 H 1.08998 * 117.50086 * 359.97438 * 21 11 10 41 41 H 1.09006 * 117.50013 * 144.97285 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6558 1.9633 -0.8771 5 6 1.5587 2.1536 1.2668 6 6 2.0881 3.5903 1.2721 7 6 3.6167 3.5630 1.1862 8 6 4.0383 2.8110 -0.0783 9 7 3.5081 1.4423 -0.0351 10 6 4.0077 0.6483 -1.1656 11 6 5.4945 0.3507 -0.9622 12 6 5.8538 -0.3000 0.3488 13 1 6.1865 0.3056 1.1788 14 6 5.7578 -1.6683 0.4884 15 7 5.3150 -2.4016 -0.5094 16 14 6.2638 -2.4812 2.0924 17 1 7.7058 -2.8316 2.0363 18 1 6.0257 -1.5437 3.2192 19 1 5.4623 -3.7145 2.2966 20 6 6.3108 -0.0449 -2.1943 21 6 6.5005 1.3357 -1.5611 22 1 -0.3634 -1.0260 0.0573 23 1 -0.3633 0.5627 0.8599 24 1 -0.3634 0.4634 -0.9173 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.9312 1.6252 2.1445 28 1 0.4690 2.1672 1.2847 29 1 1.7839 4.0871 2.1934 30 1 1.6848 4.1312 0.4161 31 1 4.0215 3.0568 2.0626 32 1 3.9978 4.5834 1.1468 33 1 5.1263 2.7774 -0.1351 34 1 3.6447 3.3255 -0.9548 35 1 3.8724 1.2084 -2.0908 36 1 3.4542 -0.2890 -1.2240 37 1 4.9642 -1.9748 -1.3067 38 1 7.1077 -0.7758 -2.0568 39 1 5.7886 -0.0927 -3.1499 40 1 6.1031 2.1956 -2.1003 41 1 7.4220 1.5135 -1.0067 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:17 Heat of formation + Delta-G solvation = -6.513004 kcal Electronic energy + Delta-G solvation = -18334.181906 eV Core-core repulsion = 15827.248707 eV Total energy + Delta-G solvation = -2506.933199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54271 -38.31046 -34.92068 -34.03828 -33.63953 -30.05471 -27.87388 -26.71671 -25.22106 -23.76700 -23.09033 -21.64909 -21.07339 -20.49133 -18.42164 -16.89707 -16.28445 -15.90473 -15.60319 -15.34455 -15.33434 -14.90439 -14.49775 -14.26097 -14.09686 -13.73012 -13.52661 -12.99050 -12.67444 -12.58217 -12.56909 -12.38325 -12.22106 -12.02291 -11.93711 -11.75539 -11.55774 -11.37389 -11.04485 -10.87093 -10.49400 -10.27114 -10.05894 -8.90911 -8.36953 -6.06750 1.55040 1.63446 1.80144 2.64605 2.98503 3.36197 3.41755 3.86789 3.88544 4.03813 4.12768 4.23716 4.34189 4.36762 4.42561 4.44893 4.53554 4.57370 4.59139 4.69254 4.81342 4.84158 4.88390 4.89319 5.02783 5.05017 5.07748 5.12660 5.18186 5.25147 5.32468 5.38836 5.42645 5.45962 5.51674 5.61780 6.25924 6.38584 6.49853 6.54959 6.88925 7.68944 9.02304 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.009719 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.216350 B = 2880.245361 C = 3253.101662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.087 3.913 4 H 0.030 0.970 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.060 3.940 9 N -0.524 5.524 10 C 0.106 3.894 11 C 0.013 3.987 12 C -0.535 4.535 13 H 0.033 0.967 14 C -0.021 4.021 15 N -0.940 5.940 16 Si 1.104 2.896 17 H -0.281 1.281 18 H -0.278 1.278 19 H -0.289 1.289 20 C -0.186 4.186 21 C -0.177 4.177 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.004 0.996 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 10.559 1.739 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.021 4.021 4 H 0.048 0.952 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.068 4.068 9 N -0.249 5.249 10 C -0.022 4.022 11 C 0.012 3.988 12 C -0.574 4.574 13 H 0.051 0.949 14 C -0.219 4.219 15 N -0.578 5.578 16 Si 0.929 3.071 17 H -0.207 1.207 18 H -0.204 1.204 19 H -0.215 1.215 20 C -0.224 4.224 21 C -0.215 4.215 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.159 8.886 2.914 12.411 hybrid contribution -0.016 1.394 -1.831 2.301 sum -8.175 10.280 1.083 13.179 Atomic orbital electron populations 1.21750 0.93257 1.02143 1.02592 1.21599 0.97162 0.96002 1.00859 1.21667 0.87169 0.95638 0.97620 0.95209 1.21655 1.00701 0.95648 0.96430 1.21552 0.94710 0.96208 1.02550 1.21565 0.96853 0.99567 0.97018 1.22068 0.99766 0.87888 0.97063 1.61619 1.07307 1.12150 1.43782 1.21569 0.95805 0.95802 0.89070 1.19172 0.88885 0.98021 0.92728 1.21261 1.46192 0.93510 0.96414 0.94919 1.26699 0.95107 0.95289 1.04808 1.70784 1.41005 1.38899 1.07142 0.83082 0.76416 0.74990 0.72610 1.20729 1.20377 1.21454 1.22684 1.04427 0.97852 0.97486 1.22878 1.02098 0.91914 1.04564 0.92498 0.90896 0.92155 0.94104 0.93622 0.92768 0.89431 0.90119 0.91660 0.92877 0.90149 0.92019 0.95984 0.97761 0.92744 0.92761 0.92222 0.90538 0.89545 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.68 71.98 0.70 -2.86 16 2 C -0.12 -4.12 5.13 30.59 0.16 -3.97 16 3 C 0.09 2.91 1.95 44.94 0.09 3.00 16 4 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 5 C -0.11 -2.92 5.03 30.65 0.15 -2.77 16 6 C -0.11 -2.70 6.00 30.68 0.18 -2.51 16 7 C -0.11 -3.21 6.09 30.65 0.19 -3.02 16 8 C 0.06 2.10 5.25 86.33 0.45 2.55 16 9 N -0.52 -21.06 4.13 -871.13 -3.59 -24.66 16 10 C 0.11 4.75 4.62 86.30 0.40 5.15 16 11 C 0.01 0.63 0.67 -52.93 -0.04 0.59 16 12 C -0.54 -29.98 8.51 25.60 0.22 -29.76 16 13 H 0.03 1.90 7.81 -2.91 -0.02 1.87 16 14 C -0.02 -1.18 5.41 84.66 0.46 -0.72 16 15 N -0.94 -56.72 13.46 21.45 0.29 -56.43 16 16 Si 1.10 52.14 29.90 68.60 2.05 54.19 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 C -0.19 -8.85 8.72 30.62 0.27 -8.59 16 21 C -0.18 -7.71 8.34 30.62 0.26 -7.46 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.59 6.32 -2.39 -0.02 1.57 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.61 5.93 -2.39 -0.01 1.59 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.93 6.44 -2.39 -0.02 1.91 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.39 5.95 -2.39 -0.01 2.38 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.00 0.19 8.01 -2.39 -0.02 0.17 16 36 H 0.05 2.68 4.95 -2.39 -0.01 2.67 16 37 H 0.26 15.83 6.17 -92.71 -0.57 15.26 16 38 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.09 3.31 8.05 -2.39 -0.02 3.29 16 41 H 0.07 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -62.49 309.69 3.39 -59.10 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.16 Total: 18.15 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 3.48 Total: -50.35 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.31 Total: -81.09 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal Total: -62.49 3.39 -59.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds