Wall clock time and date at job start Sun Mar 29 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 H 1.08998 * 109.50315 * 54.92700 * 3 2 1 5 5 C 1.53120 * 109.54154 * 294.82394 * 3 2 1 6 6 C 1.53113 * 109.16465 * 182.38716 * 5 3 2 7 7 C 1.53036 * 109.28191 * 57.65205 * 6 5 3 8 8 N 1.46850 * 109.52236 * 300.82713 * 7 6 5 9 9 C 1.46903 * 110.99729 * 185.83850 * 8 7 6 10 10 C 1.53003 * 109.47260 * 51.66168 * 9 8 7 11 11 C 1.50697 * 115.54778 * 54.23780 * 10 9 8 12 12 H 1.07994 * 120.00250 * 245.11303 * 11 10 9 13 13 C 1.37880 * 119.99735 * 65.11977 * 11 10 9 14 14 N 1.31513 * 120.00322 * 8.20738 * 13 11 10 15 15 Si 1.86803 * 119.99782 * 188.48637 * 13 11 10 16 16 H 1.48499 * 109.47049 * 174.72214 * 15 13 11 17 17 H 1.48500 * 109.47080 * 294.72718 * 15 13 11 18 18 H 1.48504 * 109.46996 * 54.72176 * 15 13 11 19 19 C 1.52995 * 117.51470 * 199.94085 * 10 9 8 20 20 C 1.52993 * 117.49691 * 268.56889 * 10 9 8 21 21 C 1.46845 * 111.19880 * 61.73838 * 8 7 6 22 22 H 1.09000 * 109.47498 * 299.99636 * 1 2 3 23 23 H 1.08997 * 109.47265 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47196 * 240.00814 * 2 1 3 26 26 H 1.08995 * 109.47451 * 120.00372 * 2 1 3 27 27 H 1.09006 * 109.51828 * 302.29338 * 5 3 2 28 28 H 1.08999 * 109.52144 * 62.41463 * 5 3 2 29 29 H 1.08997 * 109.50474 * 177.59667 * 6 5 3 30 30 H 1.09008 * 109.49916 * 297.67388 * 6 5 3 31 31 H 1.08995 * 109.46427 * 180.80523 * 7 6 5 32 32 H 1.09001 * 109.45917 * 60.83748 * 7 6 5 33 33 H 1.09002 * 109.47129 * 291.66069 * 9 8 7 34 34 H 1.09005 * 109.47082 * 171.66300 * 9 8 7 35 35 H 0.97005 * 119.99998 * 5.43310 * 14 13 11 36 36 H 1.09000 * 117.49683 * 214.97299 * 19 10 9 37 37 H 1.08995 * 117.50522 * 359.97438 * 19 10 9 38 38 H 1.09005 * 117.50461 * 359.97438 * 20 10 9 39 39 H 1.09002 * 117.49869 * 145.00216 * 20 10 9 40 40 H 1.08998 * 109.46574 * 58.27480 * 21 8 7 41 41 H 1.09003 * 109.45875 * 178.25219 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9824 0.8409 5 6 1.6394 2.1273 -1.3097 6 6 2.2046 3.5502 -1.3262 7 6 3.7251 3.4919 -1.1620 8 7 4.0567 2.8288 0.1056 9 6 5.5022 2.8778 0.3628 10 6 5.9949 4.3205 0.2325 11 6 5.2688 5.3341 1.0788 12 1 4.6879 6.1136 0.6084 13 6 5.3462 5.2665 2.4538 14 7 6.1779 4.4229 3.0249 15 14 4.2640 6.3676 3.5055 16 1 4.4424 6.0153 4.9370 17 1 4.6471 7.7865 3.2933 18 1 2.8422 6.1762 3.1220 19 6 7.4909 4.5379 -0.0025 20 6 6.4955 4.7747 -1.1400 21 6 3.5651 1.4453 0.1256 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0423 1.5655 -2.1524 28 1 0.5526 2.1652 -1.3834 29 1 1.9591 4.0283 -2.2744 30 1 1.7712 4.1234 -0.5066 31 1 4.1291 4.5042 -1.1590 32 1 4.1584 2.9305 -1.9897 33 1 6.0215 2.2497 -0.3610 34 1 5.7045 2.5144 1.3704 35 1 6.7926 3.9051 2.4818 36 1 7.9501 5.4143 0.4551 37 1 8.1247 3.6533 -0.0639 38 1 6.4743 4.0457 -1.9501 39 1 6.2998 5.8068 -1.4308 40 1 3.9992 0.8934 -0.7081 41 1 3.8529 0.9712 1.0640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:23 Heat of formation + Delta-G solvation = 2.689558 kcal Electronic energy + Delta-G solvation = -18053.735817 eV Core-core repulsion = 15547.201671 eV Total energy + Delta-G solvation = -2506.534146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95949 -36.81115 -34.05618 -31.83203 -31.72807 -29.01709 -26.13309 -24.80913 -23.63154 -22.41115 -21.23827 -20.67341 -19.22991 -19.03684 -16.51693 -15.26129 -14.70935 -14.33491 -14.09860 -13.88068 -13.70627 -13.60907 -13.12538 -12.67385 -12.59809 -12.14531 -12.04710 -11.76452 -11.18339 -11.09176 -10.86751 -10.69814 -10.65939 -10.51597 -10.40199 -10.23928 -10.01668 -9.95548 -9.76801 -9.24412 -8.58939 -8.37909 -8.06495 -7.33114 -6.18903 -3.88375 3.51312 3.56573 3.72782 4.54213 4.65391 4.98012 5.09138 5.15277 5.21514 5.39130 5.49496 5.53017 5.56143 5.78865 5.82891 5.92678 5.96272 6.02512 6.03659 6.07539 6.09803 6.21219 6.23272 6.27087 6.32873 6.41880 6.43338 6.56665 6.57289 6.61846 6.70881 6.84120 6.86612 7.01599 7.26733 7.32203 7.98785 8.07609 8.41260 8.55319 9.01393 9.81484 11.19064 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.008359 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.747243 B = 3348.993087 C = 3882.290276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.062 3.938 8 N -0.507 5.507 9 C 0.100 3.900 10 C 0.036 3.964 11 C -0.544 4.544 12 H 0.048 0.952 13 C 0.034 3.966 14 N -0.909 5.909 15 Si 1.061 2.939 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.287 1.287 19 C -0.195 4.195 20 C -0.201 4.201 21 C 0.061 3.939 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.009 0.991 33 H -0.003 1.003 34 H 0.075 0.925 35 H 0.271 0.729 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 -6.325 -7.241 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.149 4.149 6 C -0.155 4.155 7 C -0.066 4.066 8 N -0.230 5.230 9 C -0.027 4.027 10 C 0.035 3.965 11 C -0.582 4.582 12 H 0.066 0.934 13 C -0.171 4.171 14 N -0.544 5.544 15 Si 0.890 3.110 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.214 1.214 19 C -0.233 4.233 20 C -0.238 4.238 21 C -0.067 4.067 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.027 0.973 33 H 0.015 0.985 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.447 -5.734 -5.279 11.494 hybrid contribution 0.982 -0.839 -2.353 2.684 sum -7.465 -6.573 -7.633 12.538 Atomic orbital electron populations 1.21789 0.96072 1.00982 1.01931 1.21532 0.95697 0.96812 1.01568 1.21198 0.95454 0.95030 0.98591 0.90247 1.21642 0.99799 0.96492 0.96997 1.21598 0.96431 0.96302 1.01172 1.22071 0.94569 1.00890 0.89066 1.61668 1.15165 1.13503 1.32675 1.21644 0.85548 0.96361 0.99188 1.19124 0.91300 0.93008 0.93035 1.21034 1.32306 1.12509 0.92336 0.93409 1.25550 0.97726 0.98057 0.95733 1.70730 1.19781 1.24398 1.39518 0.83685 0.76057 0.75130 0.76153 1.21084 1.21928 1.21359 1.22946 0.95247 1.01255 1.03849 1.22848 1.08254 1.00337 0.92364 1.22075 0.94424 0.90498 0.99709 0.92689 0.92668 0.93287 0.92533 0.92094 0.93045 0.92358 0.92591 0.91008 0.88833 0.97257 0.98524 0.90718 0.91757 0.90015 0.91929 0.91846 0.90383 0.96508 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.12 -1.45 5.41 -26.73 -0.14 -1.60 16 3 C -0.08 -1.26 2.35 -90.54 -0.21 -1.48 16 4 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 5 C -0.11 -1.58 4.98 -26.61 -0.13 -1.72 16 6 C -0.12 -1.90 6.09 -26.65 -0.16 -2.07 16 7 C 0.06 1.19 4.72 -3.83 -0.02 1.17 16 8 N -0.51 -10.67 4.45 -234.66 -1.04 -11.72 16 9 C 0.10 2.30 4.82 -3.82 -0.02 2.29 16 10 C 0.04 0.88 0.13 -155.67 -0.02 0.86 16 11 C -0.54 -14.85 7.96 -34.44 -0.27 -15.13 16 12 H 0.05 1.33 7.83 -52.49 -0.41 0.92 16 13 C 0.03 0.96 5.38 -17.82 -0.10 0.87 16 14 N -0.91 -26.80 13.22 55.43 0.73 -26.07 16 15 Si 1.06 25.43 29.91 -169.99 -5.08 20.35 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.19 -4.49 9.38 -26.74 -0.25 -4.74 16 20 C -0.20 -4.36 8.15 -26.74 -0.22 -4.58 16 21 C 0.06 1.09 4.74 -3.83 -0.02 1.07 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.57 6.63 -51.93 -0.34 0.22 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.73 6.70 -51.93 -0.35 0.38 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.09 2.01 5.27 -51.93 -0.27 1.73 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.00 -0.07 8.08 -51.93 -0.42 -0.49 16 34 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 35 H 0.27 7.95 6.15 -40.82 -0.25 7.70 16 36 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -28.57 312.40 -9.44 -38.01 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.54 Total: 1.01 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -1.21 Total: -26.29 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.31 Total: -37.79 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.57 -9.44 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.696 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds