Wall clock time and date at job start Sun Mar 29 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 H 1.08998 * 109.50315 * 54.92700 * 3 2 1 5 5 C 1.53120 * 109.54154 * 294.82394 * 3 2 1 6 6 C 1.53113 * 109.16465 * 182.38716 * 5 3 2 7 7 C 1.53036 * 109.28191 * 57.65205 * 6 5 3 8 8 N 1.46850 * 109.52236 * 300.82713 * 7 6 5 9 9 C 1.46903 * 110.99729 * 185.83850 * 8 7 6 10 10 C 1.53003 * 109.47260 * 51.66168 * 9 8 7 11 11 C 1.50697 * 115.54778 * 54.23780 * 10 9 8 12 12 H 1.07994 * 120.00250 * 245.11303 * 11 10 9 13 13 C 1.37880 * 119.99735 * 65.11977 * 11 10 9 14 14 N 1.31513 * 120.00322 * 8.20738 * 13 11 10 15 15 Si 1.86803 * 119.99782 * 188.48637 * 13 11 10 16 16 H 1.48499 * 109.47049 * 174.72214 * 15 13 11 17 17 H 1.48500 * 109.47080 * 294.72718 * 15 13 11 18 18 H 1.48504 * 109.46996 * 54.72176 * 15 13 11 19 19 C 1.52995 * 117.51470 * 199.94085 * 10 9 8 20 20 C 1.52993 * 117.49691 * 268.56889 * 10 9 8 21 21 C 1.46845 * 111.19880 * 61.73838 * 8 7 6 22 22 H 1.09000 * 109.47498 * 299.99636 * 1 2 3 23 23 H 1.08997 * 109.47265 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47196 * 240.00814 * 2 1 3 26 26 H 1.08995 * 109.47451 * 120.00372 * 2 1 3 27 27 H 1.09006 * 109.51828 * 302.29338 * 5 3 2 28 28 H 1.08999 * 109.52144 * 62.41463 * 5 3 2 29 29 H 1.08997 * 109.50474 * 177.59667 * 6 5 3 30 30 H 1.09008 * 109.49916 * 297.67388 * 6 5 3 31 31 H 1.08995 * 109.46427 * 180.80523 * 7 6 5 32 32 H 1.09001 * 109.45917 * 60.83748 * 7 6 5 33 33 H 1.09002 * 109.47129 * 291.66069 * 9 8 7 34 34 H 1.09005 * 109.47082 * 171.66300 * 9 8 7 35 35 H 0.97005 * 119.99998 * 5.43310 * 14 13 11 36 36 H 1.09000 * 117.49683 * 214.97299 * 19 10 9 37 37 H 1.08995 * 117.50522 * 359.97438 * 19 10 9 38 38 H 1.09005 * 117.50461 * 359.97438 * 20 10 9 39 39 H 1.09002 * 117.49869 * 145.00216 * 20 10 9 40 40 H 1.08998 * 109.46574 * 58.27480 * 21 8 7 41 41 H 1.09003 * 109.45875 * 178.25219 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9824 0.8409 5 6 1.6394 2.1273 -1.3097 6 6 2.2046 3.5502 -1.3262 7 6 3.7251 3.4919 -1.1620 8 7 4.0567 2.8288 0.1056 9 6 5.5022 2.8778 0.3628 10 6 5.9949 4.3205 0.2325 11 6 5.2688 5.3341 1.0788 12 1 4.6879 6.1136 0.6084 13 6 5.3462 5.2665 2.4538 14 7 6.1779 4.4229 3.0249 15 14 4.2640 6.3676 3.5055 16 1 4.4424 6.0153 4.9370 17 1 4.6471 7.7865 3.2933 18 1 2.8422 6.1762 3.1220 19 6 7.4909 4.5379 -0.0025 20 6 6.4955 4.7747 -1.1400 21 6 3.5651 1.4453 0.1256 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0423 1.5655 -2.1524 28 1 0.5526 2.1652 -1.3834 29 1 1.9591 4.0283 -2.2744 30 1 1.7712 4.1234 -0.5066 31 1 4.1291 4.5042 -1.1590 32 1 4.1584 2.9305 -1.9897 33 1 6.0215 2.2497 -0.3610 34 1 5.7045 2.5144 1.3704 35 1 6.7926 3.9051 2.4818 36 1 7.9501 5.4143 0.4551 37 1 8.1247 3.6533 -0.0639 38 1 6.4743 4.0457 -1.9501 39 1 6.2998 5.8068 -1.4308 40 1 3.9992 0.8934 -0.7081 41 1 3.8529 0.9712 1.0640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:22 Heat of formation + Delta-G solvation = -12.462123 kcal Electronic energy + Delta-G solvation = -18054.392843 eV Core-core repulsion = 15547.201671 eV Total energy + Delta-G solvation = -2507.191172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45805 -38.47114 -35.40285 -33.93604 -33.08069 -30.21702 -27.76462 -26.86656 -24.89074 -23.84409 -23.00487 -22.01455 -20.94268 -20.51206 -18.48542 -16.78852 -16.05906 -15.81675 -15.65796 -15.54785 -15.33449 -14.99669 -14.47004 -14.33280 -14.05713 -13.83064 -13.36102 -12.99954 -12.82565 -12.61295 -12.57073 -12.25147 -12.12526 -12.01389 -11.93003 -11.76554 -11.50135 -11.45118 -11.02077 -10.88563 -10.61829 -10.29541 -10.10151 -8.93939 -8.39891 -6.08503 1.55986 1.64311 1.81814 2.65492 2.98566 3.31714 3.46552 3.82703 3.96188 3.96937 4.12623 4.25361 4.30868 4.40717 4.44183 4.49816 4.51909 4.55784 4.70306 4.74521 4.78359 4.78913 4.87891 4.90321 5.01582 5.03712 5.06153 5.15486 5.17943 5.26682 5.32452 5.37293 5.42722 5.45982 5.54853 5.60979 6.19883 6.33472 6.48535 6.53094 6.83743 7.66799 8.98756 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.008359 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.747243 B = 3348.993087 C = 3882.290276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.080 4.080 4 H 0.059 0.941 5 C -0.105 4.105 6 C -0.114 4.114 7 C 0.065 3.935 8 N -0.530 5.530 9 C 0.113 3.887 10 C 0.010 3.990 11 C -0.545 4.545 12 H 0.035 0.965 13 C -0.012 4.012 14 N -0.935 5.935 15 Si 1.100 2.900 16 H -0.289 1.289 17 H -0.277 1.277 18 H -0.278 1.278 19 C -0.197 4.197 20 C -0.173 4.173 21 C 0.061 3.939 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.007 0.993 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -6.952 -8.843 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.099 4.099 4 H 0.077 0.923 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.063 4.063 8 N -0.254 5.254 9 C -0.015 4.015 10 C 0.009 3.991 11 C -0.583 4.583 12 H 0.053 0.947 13 C -0.211 4.211 14 N -0.572 5.572 15 Si 0.924 3.076 16 H -0.215 1.215 17 H -0.202 1.202 18 H -0.204 1.204 19 C -0.236 4.236 20 C -0.210 4.210 21 C -0.067 4.067 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.995 -6.357 -6.905 13.711 hybrid contribution 1.492 -0.640 -1.898 2.498 sum -8.503 -6.996 -8.803 14.098 Atomic orbital electron populations 1.21767 0.94536 1.02110 1.02054 1.21486 0.96950 0.94653 1.01975 1.21170 0.93166 0.96964 0.98570 0.92295 1.21609 1.01156 0.94836 0.96587 1.21584 0.94105 0.97886 1.01622 1.22025 0.96666 0.99210 0.88378 1.61620 1.13819 1.15738 1.34178 1.21360 0.87256 0.95326 0.97566 1.19159 0.91814 0.93312 0.94784 1.21233 1.31735 1.12591 0.92750 0.94661 1.26667 0.98306 0.98716 0.97427 1.70826 1.21022 1.25898 1.39478 0.83156 0.75210 0.74593 0.74596 1.21510 1.20234 1.20364 1.22891 0.94848 1.01183 1.04639 1.22818 1.05602 1.00841 0.91759 1.22147 0.96444 0.88723 0.99369 0.93226 0.91886 0.91707 0.91461 0.92416 0.91806 0.90064 0.90235 0.92934 0.91451 0.96387 0.97552 0.93983 0.92804 0.91746 0.90476 0.89568 0.90351 0.95538 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.67 71.98 0.70 -2.02 16 2 C -0.11 -2.50 5.41 30.59 0.17 -2.33 16 3 C -0.08 -2.28 2.35 -10.74 -0.03 -2.30 16 4 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 5 C -0.10 -2.65 4.98 30.67 0.15 -2.50 16 6 C -0.11 -3.48 6.09 30.64 0.19 -3.30 16 7 C 0.06 2.42 4.72 86.32 0.41 2.83 16 8 N -0.53 -22.25 4.45 -896.34 -3.99 -26.24 16 9 C 0.11 5.25 4.82 86.30 0.42 5.67 16 10 C 0.01 0.49 0.13 -52.93 -0.01 0.48 16 11 C -0.55 -30.18 7.96 25.60 0.20 -29.97 16 12 H 0.04 1.99 7.83 -2.91 -0.02 1.97 16 13 C -0.01 -0.67 5.38 84.66 0.46 -0.22 16 14 N -0.94 -56.50 13.22 21.45 0.28 -56.22 16 15 Si 1.10 51.76 29.91 68.60 2.05 53.81 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 C -0.20 -9.09 9.38 30.59 0.29 -8.80 16 20 C -0.17 -7.32 8.15 30.59 0.25 -7.07 16 21 C 0.06 2.13 4.74 86.33 0.41 2.54 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.06 6.63 -2.39 -0.02 1.05 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 1.73 6.70 -2.39 -0.02 1.71 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 2.85 5.27 -2.39 -0.01 2.83 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.01 0.28 8.08 -2.39 -0.02 0.26 16 34 H 0.04 2.20 6.94 -2.38 -0.02 2.18 16 35 H 0.26 15.86 6.15 -92.70 -0.57 15.29 16 36 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.08 3.28 8.14 -2.39 -0.02 3.27 16 38 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 Total: -1.00 -61.73 312.40 3.10 -58.63 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.16 Total: 17.01 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.60 Total: -46.99 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -3.71 Total: -82.46 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -61.73 3.10 -58.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.164 kcal (2) G-P(sol) polarization free energy of solvation -61.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds