Wall clock time and date at job start Sun Mar 29 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 C 1.53123 * 109.52465 * 184.99742 * 3 2 1 5 5 C 1.53040 * 109.27740 * 182.43964 * 4 3 2 6 6 N 1.46840 * 109.52347 * 59.18259 * 5 4 3 7 7 C 1.46897 * 111.00143 * 174.16031 * 6 5 4 8 8 C 1.53004 * 109.47344 * 177.47813 * 7 6 5 9 9 C 1.50697 * 115.54661 * 291.02949 * 8 7 6 10 10 H 1.08007 * 119.99604 * 143.97847 * 9 8 7 11 11 C 1.37877 * 120.00379 * 323.97676 * 9 8 7 12 12 N 1.31516 * 120.00292 * 163.92211 * 11 9 8 13 13 Si 1.86805 * 119.99690 * 343.91854 * 11 9 8 14 14 H 1.48497 * 109.46617 * 95.45053 * 13 11 9 15 15 H 1.48495 * 109.47061 * 215.44661 * 13 11 9 16 16 H 1.48497 * 109.47269 * 335.44902 * 13 11 9 17 17 C 1.52997 * 117.49837 * 145.36161 * 8 7 6 18 18 C 1.52999 * 117.49857 * 76.70303 * 8 7 6 19 19 C 1.46848 * 111.19875 * 298.25496 * 6 5 4 20 20 C 1.53034 * 109.52664 * 61.74215 * 19 6 5 21 21 H 1.08999 * 109.47529 * 299.99839 * 1 2 3 22 22 H 1.09005 * 109.47272 * 60.00308 * 1 2 3 23 23 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47529 * 240.00161 * 2 1 3 25 25 H 1.09005 * 109.47272 * 119.99691 * 2 1 3 26 26 H 1.09001 * 109.57673 * 305.15487 * 3 2 1 27 27 H 1.08995 * 109.49904 * 62.50119 * 4 3 2 28 28 H 1.09002 * 109.50340 * 302.38180 * 4 3 2 29 29 H 1.08994 * 109.46265 * 299.16268 * 5 4 3 30 30 H 1.09004 * 109.45736 * 179.19498 * 5 4 3 31 31 H 1.08995 * 109.47479 * 57.47423 * 7 6 5 32 32 H 1.09001 * 109.46975 * 297.47181 * 7 6 5 33 33 H 0.96994 * 120.00198 * 179.97438 * 12 11 9 34 34 H 1.09000 * 117.50103 * 359.97438 * 17 8 7 35 35 H 1.09000 * 117.49798 * 145.01998 * 17 8 7 36 36 H 1.09004 * 117.49468 * 214.98091 * 18 8 7 37 37 H 1.08993 * 117.50082 * 359.97226 * 18 8 7 38 38 H 1.08998 * 109.46697 * 181.75878 * 19 6 5 39 39 H 1.09002 * 109.46428 * 301.72558 * 19 6 5 40 40 H 1.08990 * 109.51008 * 180.88122 * 20 19 6 41 41 H 1.09010 * 109.50134 * 60.75840 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5660 1.4458 -0.1257 5 6 4.0749 2.8877 -0.0639 6 7 3.6695 3.4971 1.2091 7 6 4.2575 4.8344 1.3635 8 6 3.7633 5.4612 2.6688 9 6 2.3031 5.8325 2.6995 10 1 1.7364 5.7199 3.6120 11 6 1.6906 6.3158 1.5627 12 7 0.3781 6.3418 1.4834 13 14 2.7250 6.9337 0.1353 14 1 2.8961 5.8447 -0.8597 15 1 2.0449 8.0876 -0.5059 16 1 4.0562 7.3599 0.6366 17 6 4.7370 6.3598 3.4339 18 6 4.3946 4.9685 3.9725 19 6 2.2070 3.5481 1.3314 20 6 1.6422 2.1259 1.3113 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6041 1.9839 -0.8397 27 1 3.8536 0.9988 -1.0773 28 1 3.9998 0.8713 0.6928 29 1 3.6516 3.4580 -0.8907 30 1 5.1624 2.8925 -0.1388 31 1 3.9593 5.4616 0.5235 32 1 5.3442 4.7528 1.3883 33 1 -0.0528 6.6822 0.6839 34 1 5.7297 6.5041 3.0076 35 1 4.3213 7.2193 3.9598 36 1 3.7538 4.9132 4.8525 37 1 5.1616 4.1975 3.9003 38 1 1.9377 4.0325 2.2700 39 1 1.7923 4.1153 0.4981 40 1 0.5555 2.1647 1.3864 41 1 2.0458 1.5621 2.1524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:05 Heat of formation + Delta-G solvation = 25.911035 kcal Electronic energy + Delta-G solvation = -18403.404906 eV Core-core repulsion = 15897.877719 eV Total energy + Delta-G solvation = -2505.527187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.94308 -36.81466 -34.20234 -32.43590 -30.48599 -29.84877 -26.58357 -25.46273 -23.30077 -22.08859 -21.26685 -20.45584 -19.10926 -18.98207 -16.47574 -15.63681 -14.96140 -14.47946 -14.16958 -13.91178 -13.36384 -13.33966 -13.13019 -12.99318 -12.53704 -12.11610 -11.99095 -11.61521 -11.37285 -10.99531 -10.90949 -10.80763 -10.54000 -10.41299 -10.37545 -10.09230 -9.91322 -9.64823 -9.56836 -9.35093 -8.98342 -8.71816 -8.23674 -7.25857 -6.24246 -4.04285 3.17578 3.33234 3.37600 4.31208 4.60749 4.93068 5.05820 5.18802 5.24828 5.44969 5.60419 5.62507 5.73782 5.80415 5.95332 5.96144 6.00750 6.10997 6.13975 6.21214 6.23969 6.28116 6.34679 6.40042 6.45254 6.51348 6.55685 6.63711 6.66349 6.72135 6.83071 6.84105 7.04184 7.18449 7.24616 7.60860 7.72228 8.05459 8.18367 8.47460 8.82247 9.41268 10.85978 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.009575 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.872916 B = 2923.683149 C = 3242.211502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.093 4.093 4 C -0.104 4.104 5 C 0.048 3.952 6 N -0.523 5.523 7 C 0.087 3.913 8 C 0.009 3.991 9 C -0.482 4.482 10 H 0.081 0.919 11 C 0.083 3.917 12 N -0.878 5.878 13 Si 0.883 3.117 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.264 1.264 17 C -0.210 4.210 18 C -0.174 4.174 19 C 0.036 3.964 20 C -0.109 4.109 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.266 0.734 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -8.893 -3.245 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.111 4.111 4 C -0.142 4.142 5 C -0.080 4.080 6 N -0.247 5.247 7 C -0.040 4.040 8 C 0.008 3.992 9 C -0.519 4.519 10 H 0.099 0.901 11 C -0.121 4.121 12 N -0.513 5.513 13 Si 0.715 3.285 14 H -0.214 1.214 15 H -0.229 1.229 16 H -0.189 1.189 17 C -0.249 4.249 18 C -0.211 4.211 19 C -0.090 4.090 20 C -0.147 4.147 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.095 -9.141 -2.981 10.450 hybrid contribution 0.287 0.936 -1.716 1.975 sum 4.382 -8.205 -4.697 10.420 Atomic orbital electron populations 1.21810 0.96182 1.00802 1.02239 1.21538 0.95718 0.96842 1.01163 1.21295 0.95258 0.95293 0.99272 1.21554 0.95571 0.96279 1.00756 1.22073 0.99168 0.95122 0.91646 1.61958 1.11554 1.20505 1.30701 1.21863 0.96861 0.88480 0.96779 1.19301 0.93907 0.97426 0.88552 1.20185 0.90553 1.42710 0.98435 0.90095 1.24901 0.94498 0.94852 0.97871 1.69940 1.08334 1.44159 1.28903 0.86989 0.81138 0.77689 0.82636 1.21406 1.22869 1.18917 1.23128 0.99764 0.94112 1.07888 1.22643 1.03312 0.95978 0.99200 1.23149 0.84866 0.94449 1.06584 1.21741 0.99833 0.97272 0.95837 0.92079 0.93079 0.93438 0.92884 0.92183 0.92168 0.92757 0.91441 0.96030 0.92045 0.96323 0.92792 0.92443 0.91691 0.89847 0.90286 0.90761 0.83558 0.95627 0.92109 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.15 0.36 -1.57 16 2 C -0.12 -1.52 5.41 -26.74 -0.14 -1.66 16 3 C -0.09 -1.48 2.25 -90.49 -0.20 -1.69 16 4 C -0.10 -1.61 5.38 -26.65 -0.14 -1.75 16 5 C 0.05 0.88 5.46 -3.84 -0.02 0.86 16 6 N -0.52 -10.94 4.75 -234.68 -1.12 -12.05 16 7 C 0.09 1.94 4.39 -3.82 -0.02 1.92 16 8 C 0.01 0.22 1.10 -155.66 -0.17 0.04 16 9 C -0.48 -12.78 6.44 -34.44 -0.22 -13.00 16 10 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 11 C 0.08 2.25 3.43 -17.82 -0.06 2.19 16 12 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 13 Si 0.88 21.99 23.28 -169.99 -3.96 18.04 16 14 H -0.29 -7.09 6.89 56.52 0.39 -6.70 16 15 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 16 H -0.26 -6.43 6.93 56.52 0.39 -6.04 16 17 C -0.21 -4.47 9.91 -26.70 -0.26 -4.73 16 18 C -0.17 -3.61 9.96 -26.70 -0.27 -3.88 16 19 C 0.04 0.79 3.80 -3.84 -0.01 0.78 16 20 C -0.11 -2.02 5.08 -26.65 -0.14 -2.15 16 21 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.02 0.46 2.25 -51.93 -0.12 0.34 16 32 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.15 3.70 4.32 -51.93 -0.22 3.48 16 39 H 0.03 0.64 6.26 -51.93 -0.33 0.31 16 40 H 0.06 1.12 6.70 -51.93 -0.35 0.77 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -26.91 299.76 -8.36 -35.28 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.28 Total: 3.05 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -1.30 Total: -24.63 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.34 Total: -36.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -3.96 Total: 18.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.91 -8.36 -35.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.189 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds