Wall clock time and date at job start Sun Mar 29 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 C 1.53123 * 109.52465 * 184.99742 * 3 2 1 5 5 C 1.53040 * 109.27740 * 182.43964 * 4 3 2 6 6 N 1.46840 * 109.52347 * 59.18259 * 5 4 3 7 7 C 1.46897 * 111.00143 * 174.16031 * 6 5 4 8 8 C 1.53004 * 109.47344 * 177.47813 * 7 6 5 9 9 C 1.50697 * 115.54661 * 291.02949 * 8 7 6 10 10 H 1.08007 * 119.99604 * 143.97847 * 9 8 7 11 11 C 1.37877 * 120.00379 * 323.97676 * 9 8 7 12 12 N 1.31516 * 120.00292 * 163.92211 * 11 9 8 13 13 Si 1.86805 * 119.99690 * 343.91854 * 11 9 8 14 14 H 1.48497 * 109.46617 * 95.45053 * 13 11 9 15 15 H 1.48495 * 109.47061 * 215.44661 * 13 11 9 16 16 H 1.48497 * 109.47269 * 335.44902 * 13 11 9 17 17 C 1.52997 * 117.49837 * 145.36161 * 8 7 6 18 18 C 1.52999 * 117.49857 * 76.70303 * 8 7 6 19 19 C 1.46848 * 111.19875 * 298.25496 * 6 5 4 20 20 C 1.53034 * 109.52664 * 61.74215 * 19 6 5 21 21 H 1.08999 * 109.47529 * 299.99839 * 1 2 3 22 22 H 1.09005 * 109.47272 * 60.00308 * 1 2 3 23 23 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47529 * 240.00161 * 2 1 3 25 25 H 1.09005 * 109.47272 * 119.99691 * 2 1 3 26 26 H 1.09001 * 109.57673 * 305.15487 * 3 2 1 27 27 H 1.08995 * 109.49904 * 62.50119 * 4 3 2 28 28 H 1.09002 * 109.50340 * 302.38180 * 4 3 2 29 29 H 1.08994 * 109.46265 * 299.16268 * 5 4 3 30 30 H 1.09004 * 109.45736 * 179.19498 * 5 4 3 31 31 H 1.08995 * 109.47479 * 57.47423 * 7 6 5 32 32 H 1.09001 * 109.46975 * 297.47181 * 7 6 5 33 33 H 0.96994 * 120.00198 * 179.97438 * 12 11 9 34 34 H 1.09000 * 117.50103 * 359.97438 * 17 8 7 35 35 H 1.09000 * 117.49798 * 145.01998 * 17 8 7 36 36 H 1.09004 * 117.49468 * 214.98091 * 18 8 7 37 37 H 1.08993 * 117.50082 * 359.97226 * 18 8 7 38 38 H 1.08998 * 109.46697 * 181.75878 * 19 6 5 39 39 H 1.09002 * 109.46428 * 301.72558 * 19 6 5 40 40 H 1.08990 * 109.51008 * 180.88122 * 20 19 6 41 41 H 1.09010 * 109.50134 * 60.75840 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5660 1.4458 -0.1257 5 6 4.0749 2.8877 -0.0639 6 7 3.6695 3.4971 1.2091 7 6 4.2575 4.8344 1.3635 8 6 3.7633 5.4612 2.6688 9 6 2.3031 5.8325 2.6995 10 1 1.7364 5.7199 3.6120 11 6 1.6906 6.3158 1.5627 12 7 0.3781 6.3418 1.4834 13 14 2.7250 6.9337 0.1353 14 1 2.8961 5.8447 -0.8597 15 1 2.0449 8.0876 -0.5059 16 1 4.0562 7.3599 0.6366 17 6 4.7370 6.3598 3.4339 18 6 4.3946 4.9685 3.9725 19 6 2.2070 3.5481 1.3314 20 6 1.6422 2.1259 1.3113 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6041 1.9839 -0.8397 27 1 3.8536 0.9988 -1.0773 28 1 3.9998 0.8713 0.6928 29 1 3.6516 3.4580 -0.8907 30 1 5.1624 2.8925 -0.1388 31 1 3.9593 5.4616 0.5235 32 1 5.3442 4.7528 1.3883 33 1 -0.0528 6.6822 0.6839 34 1 5.7297 6.5041 3.0076 35 1 4.3213 7.2193 3.9598 36 1 3.7538 4.9132 4.8525 37 1 5.1616 4.1975 3.9003 38 1 1.9377 4.0325 2.2700 39 1 1.7923 4.1153 0.4981 40 1 0.5555 2.1647 1.3864 41 1 2.0458 1.5621 2.1524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:05 Heat of formation + Delta-G solvation = 9.812942 kcal Electronic energy + Delta-G solvation = -18404.102972 eV Core-core repulsion = 15897.877719 eV Total energy + Delta-G solvation = -2506.225253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52994 -38.40066 -35.62872 -34.48162 -31.83265 -31.35218 -28.36588 -27.18651 -24.70776 -23.59517 -22.95159 -21.78010 -20.90918 -20.53139 -18.39532 -17.47587 -16.58004 -15.91719 -15.65856 -15.48056 -15.01894 -14.80769 -14.79763 -14.53176 -14.06278 -13.74520 -13.50264 -13.21309 -12.77818 -12.58521 -12.44143 -12.36828 -12.09955 -12.02822 -11.87840 -11.71972 -11.43664 -11.33073 -11.17775 -10.98395 -10.71742 -10.48581 -10.23316 -8.98573 -8.35752 -6.15171 1.17194 1.28369 1.37284 2.25537 2.82628 3.10304 3.64800 3.86249 3.93101 3.99012 4.07800 4.24512 4.42845 4.44777 4.47765 4.53634 4.63231 4.67388 4.70791 4.76493 4.80079 4.88012 4.92472 4.98976 5.04204 5.13470 5.14486 5.19574 5.24294 5.28568 5.30375 5.39740 5.51828 5.57672 5.63064 5.69402 5.82269 6.30201 6.37595 6.51502 6.70382 7.30505 8.78194 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.009575 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.872916 B = 2923.683149 C = 3242.211502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.090 4.090 4 C -0.097 4.097 5 C 0.043 3.957 6 N -0.520 5.520 7 C 0.086 3.914 8 C -0.022 4.022 9 C -0.473 4.473 10 H 0.042 0.958 11 C 0.046 3.954 12 N -0.920 5.920 13 Si 0.931 3.069 14 H -0.289 1.289 15 H -0.307 1.307 16 H -0.250 1.250 17 C -0.199 4.199 18 C -0.156 4.156 19 C 0.048 3.952 20 C -0.103 4.103 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.001 0.999 30 H 0.085 0.915 31 H 0.002 0.998 32 H 0.080 0.920 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.111 0.889 39 H -0.010 1.010 40 H 0.051 0.949 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -10.777 -3.876 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.109 4.109 4 C -0.135 4.135 5 C -0.085 4.085 6 N -0.244 5.244 7 C -0.041 4.041 8 C -0.023 4.023 9 C -0.510 4.510 10 H 0.060 0.940 11 C -0.154 4.154 12 N -0.558 5.558 13 Si 0.762 3.238 14 H -0.217 1.217 15 H -0.236 1.236 16 H -0.174 1.174 17 C -0.237 4.237 18 C -0.193 4.193 19 C -0.079 4.079 20 C -0.141 4.141 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.019 0.981 30 H 0.103 0.897 31 H 0.019 0.981 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.008 0.992 40 H 0.070 0.930 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.617 -11.028 -3.600 13.355 hybrid contribution -0.508 1.499 -1.425 2.130 sum 6.110 -9.528 -5.026 12.384 Atomic orbital electron populations 1.21817 0.96131 1.01913 1.01296 1.21482 0.95744 0.94672 1.02585 1.21257 0.96103 0.96811 0.96688 1.21554 0.94592 0.94546 1.02760 1.22259 1.00566 0.96274 0.89376 1.62016 1.10157 1.19836 1.32422 1.21881 0.98263 0.88743 0.95223 1.19296 0.92366 0.99984 0.90655 1.20230 0.92445 1.41567 0.96719 0.93976 1.25354 0.94978 0.95351 0.99765 1.70041 1.09808 1.46337 1.29613 0.86222 0.80441 0.76725 0.80415 1.21693 1.23618 1.17381 1.23147 1.00032 0.93989 1.06527 1.22657 1.02890 0.96469 0.97309 1.22753 0.86141 0.96015 1.02980 1.21651 0.99151 0.95357 0.97962 0.93568 0.93573 0.91280 0.90791 0.91295 0.93881 0.89864 0.90374 0.98057 0.89702 0.98071 0.90156 0.92712 0.89059 0.90518 0.90891 0.88427 0.87184 0.99158 0.93019 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.67 71.98 0.70 -2.93 16 2 C -0.11 -2.52 5.41 30.59 0.17 -2.35 16 3 C -0.09 -2.72 2.25 -10.71 -0.02 -2.75 16 4 C -0.10 -2.68 5.38 30.65 0.16 -2.52 16 5 C 0.04 1.47 5.46 86.33 0.47 1.94 16 6 N -0.52 -21.02 4.75 -896.39 -4.26 -25.28 16 7 C 0.09 3.67 4.39 86.31 0.38 4.05 16 8 C -0.02 -1.00 1.10 -52.93 -0.06 -1.06 16 9 C -0.47 -25.81 6.44 25.60 0.16 -25.65 16 10 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 11 C 0.05 2.56 3.43 84.65 0.29 2.85 16 12 N -0.92 -54.95 13.96 21.45 0.30 -54.65 16 13 Si 0.93 46.14 23.28 68.60 1.60 47.74 16 14 H -0.29 -14.29 6.89 99.48 0.69 -13.60 16 15 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 16 H -0.25 -11.63 6.93 99.48 0.69 -10.94 16 17 C -0.20 -7.96 9.91 30.62 0.30 -7.65 16 18 C -0.16 -6.16 9.96 30.62 0.30 -5.85 16 19 C 0.05 2.18 3.80 86.32 0.33 2.51 16 20 C -0.10 -3.81 5.08 30.65 0.16 -3.66 16 21 H 0.05 1.20 6.64 -2.39 -0.02 1.19 16 22 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.08 2.50 8.12 -2.38 -0.02 2.48 16 31 H 0.00 0.09 2.25 -2.39 -0.01 0.08 16 32 H 0.08 2.98 8.06 -2.39 -0.02 2.96 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 34 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.11 5.80 4.32 -2.39 -0.01 5.79 16 39 H -0.01 -0.51 6.26 -2.39 -0.01 -0.53 16 40 H 0.05 1.96 6.70 -2.39 -0.02 1.94 16 41 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -59.94 299.76 1.91 -58.03 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.93 Total: 17.23 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.34 Total: -43.06 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.96 Total: -79.94 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.60 Total: 47.74 kcal Total: -59.94 1.91 -58.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds