Wall clock time and date at job start Sun Mar 29 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.52996 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46908 * 185.23950 * 4 3 2 6 6 C 1.46899 * 110.99985 * 285.18361 * 5 4 3 7 7 C 1.52999 * 109.47432 * 170.00225 * 6 5 4 8 8 C 1.50696 * 115.54913 * 325.58386 * 7 6 5 9 9 H 1.08003 * 119.99722 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00090 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99937 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47165 * 269.99939 * 12 10 8 14 14 H 1.48502 * 109.47264 * 29.99994 * 12 10 8 15 15 H 1.48501 * 109.47259 * 149.99742 * 12 10 8 16 16 C 1.52995 * 117.49813 * 111.25451 * 7 6 5 17 17 C 1.53001 * 117.49755 * 179.91821 * 7 6 5 18 18 C 1.46904 * 111.00013 * 161.23656 * 5 4 3 19 19 C 1.52999 * 117.49791 * 10.76576 * 18 5 4 20 20 C 1.52999 * 117.49591 * 302.14462 * 18 5 4 21 21 H 1.09008 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47082 * 299.99881 * 1 2 3 23 23 H 1.08990 * 109.47157 * 60.00228 * 1 2 3 24 24 H 1.08999 * 109.47082 * 240.00119 * 2 1 3 25 25 H 1.09004 * 109.47180 * 119.99563 * 2 1 3 26 26 H 1.08999 * 109.47186 * 60.00183 * 3 2 1 27 27 H 1.08997 * 109.46871 * 300.00170 * 3 2 1 28 28 H 1.08997 * 109.47499 * 65.23462 * 4 3 2 29 29 H 1.09002 * 109.47208 * 305.23485 * 4 3 2 30 30 H 1.09005 * 109.46878 * 50.00167 * 6 5 4 31 31 H 1.09000 * 109.47233 * 290.00771 * 6 5 4 32 32 H 0.96998 * 119.99929 * 180.02562 * 11 10 8 33 33 H 1.09000 * 117.49647 * 214.99878 * 16 7 6 34 34 H 1.09002 * 117.50121 * 0.02660 * 16 7 6 35 35 H 1.08994 * 117.49991 * 359.96964 * 17 7 6 36 36 H 1.08999 * 117.49905 * 145.00332 * 17 7 6 37 37 H 1.08997 * 115.54991 * 156.48320 * 18 5 4 38 38 H 1.08996 * 117.49851 * 0.02562 * 19 18 5 39 39 H 1.09005 * 117.49434 * 145.02148 * 19 18 5 40 40 H 1.09000 * 117.50027 * 214.97853 * 20 18 5 41 41 H 1.09007 * 117.50064 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8218 0.1258 6 6 3.8959 3.5563 -1.1358 7 6 4.1791 5.0415 -0.9017 8 6 3.7637 5.5783 0.4437 9 1 3.2992 4.9236 1.1663 10 6 3.9755 6.9054 0.7519 11 7 4.5397 7.7029 -0.1286 12 14 3.4612 7.5705 2.4199 13 1 2.0640 8.0681 2.3450 14 1 3.5474 6.4878 3.4326 15 1 4.3632 8.6844 2.8082 16 6 5.4406 5.6288 -1.5378 17 6 4.0625 5.9809 -2.1038 18 6 5.4596 2.8447 0.5704 19 6 6.2213 1.5178 0.5745 20 6 5.7911 2.1570 1.8963 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 1.0123 -0.9340 29 1 3.9337 0.8496 0.8385 30 1 2.8750 3.4337 -1.4976 31 1 4.5933 3.1657 -1.8768 32 1 4.6891 8.6364 0.0884 33 1 5.9699 6.4036 -0.9831 34 1 6.0685 4.9573 -2.1234 35 1 3.7845 5.5408 -3.0613 36 1 3.6854 6.9872 -1.9214 37 1 6.0185 3.7456 0.3171 38 1 5.6838 0.6280 0.2470 39 1 7.2817 1.5455 0.3236 40 1 6.5684 2.6052 2.5151 41 1 4.9704 1.6872 2.4386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:26 Heat of formation + Delta-G solvation = 53.706559 kcal Electronic energy + Delta-G solvation = -17747.489230 eV Core-core repulsion = 15243.167347 eV Total energy + Delta-G solvation = -2504.321883 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.73498 -36.18164 -35.12831 -32.65983 -31.30596 -28.59992 -25.76274 -24.67418 -23.04609 -21.92091 -20.85544 -20.56255 -19.53415 -18.59528 -16.33677 -15.39336 -15.22982 -14.97420 -14.67794 -13.75531 -13.50534 -13.14981 -12.98004 -12.62798 -12.21615 -11.99798 -11.58574 -11.31506 -11.05481 -10.95679 -10.92013 -10.77936 -10.68034 -10.47013 -10.28095 -10.11048 -10.01100 -9.89323 -9.72766 -9.30317 -8.67430 -8.22995 -7.92296 -7.32314 -5.81592 -3.82687 3.37260 3.44257 3.49548 4.26354 4.52186 4.55811 5.08037 5.15245 5.18656 5.27376 5.40220 5.47510 5.52065 5.61845 5.80763 5.86964 5.93012 5.95488 5.98924 6.01192 6.09010 6.23190 6.30880 6.31199 6.40664 6.50639 6.52329 6.60894 6.65985 6.67757 6.81395 7.12515 7.29423 7.35998 7.75483 7.84737 7.99600 8.19831 8.30447 8.71344 9.19016 9.71510 11.15328 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.007784 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.498247 B = 3596.190171 C = 3813.067848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.049 3.951 5 N -0.484 5.484 6 C 0.104 3.896 7 C 0.023 3.977 8 C -0.443 4.443 9 H 0.075 0.925 10 C 0.049 3.951 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.284 1.284 14 H -0.274 1.274 15 H -0.291 1.291 16 C -0.195 4.195 17 C -0.190 4.190 18 C 0.059 3.941 19 C -0.239 4.239 20 C -0.178 4.178 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.013 0.987 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -12.386 0.209 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.079 4.079 5 N -0.204 5.204 6 C -0.023 4.023 7 C 0.023 3.977 8 C -0.481 4.481 9 H 0.093 0.907 10 C -0.150 4.150 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.211 1.211 14 H -0.199 1.199 15 H -0.217 1.217 16 C -0.233 4.233 17 C -0.228 4.228 18 C -0.051 4.051 19 C -0.278 4.278 20 C -0.216 4.216 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.022 -11.944 0.557 12.127 hybrid contribution 0.358 0.077 0.167 0.403 sum -1.663 -11.867 0.725 12.005 Atomic orbital electron populations 1.21755 0.96043 1.00995 1.02009 1.21497 0.95726 0.97406 1.01388 1.21601 0.95009 0.95580 1.03124 1.22233 0.95348 0.90879 0.99470 1.61680 1.16319 1.11267 1.31133 1.21651 0.98792 0.94380 0.87514 1.18991 0.97833 0.87457 0.93446 1.20673 1.36278 0.93381 0.97751 0.90719 1.25051 0.95789 0.97261 0.96884 1.70028 1.43908 1.05168 1.33742 0.86577 0.78111 0.78434 0.84764 1.21061 1.19854 1.21694 1.22915 0.91262 1.04417 1.04716 1.22821 1.01636 1.03533 0.94858 1.22613 0.88973 0.94807 0.98716 1.23600 1.00952 0.99585 1.03706 1.22950 1.02846 1.04656 0.91130 0.93256 0.92651 0.92779 0.92576 0.92374 0.90910 0.91992 0.95613 0.91315 0.91956 0.96899 0.93520 0.87330 0.94507 0.94369 0.87157 0.85238 0.89187 0.89676 0.89104 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.12 -1.67 5.23 -26.73 -0.14 -1.81 16 4 C 0.05 0.76 3.62 -3.83 -0.01 0.75 16 5 N -0.48 -9.27 3.57 -226.65 -0.81 -10.08 16 6 C 0.10 2.16 4.92 -3.83 -0.02 2.14 16 7 C 0.02 0.57 1.55 -155.66 -0.24 0.33 16 8 C -0.44 -11.89 8.39 -34.44 -0.29 -12.18 16 9 H 0.07 2.04 7.22 -52.48 -0.38 1.66 16 10 C 0.05 1.35 5.27 -17.82 -0.09 1.26 16 11 N -0.89 -24.88 8.59 55.43 0.48 -24.40 16 12 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.20 -4.84 8.73 -26.69 -0.23 -5.08 16 17 C -0.19 -4.76 9.38 -26.69 -0.25 -5.01 16 18 C 0.06 1.10 5.52 -67.71 -0.37 0.72 16 19 C -0.24 -3.65 9.56 -26.73 -0.26 -3.91 16 20 C -0.18 -2.87 9.91 -26.73 -0.26 -3.14 16 21 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.94 6.92 -51.93 -0.36 0.58 16 28 H 0.03 0.39 7.82 -51.93 -0.41 -0.01 16 29 H 0.07 1.01 5.60 -51.93 -0.29 0.72 16 30 H 0.06 1.27 6.66 -51.93 -0.35 0.92 16 31 H 0.01 0.26 7.88 -51.93 -0.41 -0.15 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.11 2.98 6.29 -51.93 -0.33 2.65 16 34 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 3.05 6.28 -51.93 -0.33 2.72 16 37 H 0.13 2.77 6.79 -51.93 -0.35 2.42 16 38 H 0.09 1.29 6.03 -51.93 -0.31 0.97 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 1.40 7.46 -51.93 -0.39 1.02 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -27.17 315.53 -9.82 -36.99 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.25 Total: 4.95 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -1.96 Total: -28.71 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.33 Total: -34.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.17 -9.82 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.695 kcal (2) G-P(sol) polarization free energy of solvation -27.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds