Wall clock time and date at job start Sun Mar 29 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.52996 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46908 * 185.23950 * 4 3 2 6 6 C 1.46899 * 110.99985 * 285.18361 * 5 4 3 7 7 C 1.52999 * 109.47432 * 170.00225 * 6 5 4 8 8 C 1.50696 * 115.54913 * 325.58386 * 7 6 5 9 9 H 1.08003 * 119.99722 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00090 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99937 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00038 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47165 * 269.99939 * 12 10 8 14 14 H 1.48502 * 109.47264 * 29.99994 * 12 10 8 15 15 H 1.48501 * 109.47259 * 149.99742 * 12 10 8 16 16 C 1.52995 * 117.49813 * 111.25451 * 7 6 5 17 17 C 1.53001 * 117.49755 * 179.91821 * 7 6 5 18 18 C 1.46904 * 111.00013 * 161.23656 * 5 4 3 19 19 C 1.52999 * 117.49791 * 10.76576 * 18 5 4 20 20 C 1.52999 * 117.49591 * 302.14462 * 18 5 4 21 21 H 1.09008 * 109.46795 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47082 * 299.99881 * 1 2 3 23 23 H 1.08990 * 109.47157 * 60.00228 * 1 2 3 24 24 H 1.08999 * 109.47082 * 240.00119 * 2 1 3 25 25 H 1.09004 * 109.47180 * 119.99563 * 2 1 3 26 26 H 1.08999 * 109.47186 * 60.00183 * 3 2 1 27 27 H 1.08997 * 109.46871 * 300.00170 * 3 2 1 28 28 H 1.08997 * 109.47499 * 65.23462 * 4 3 2 29 29 H 1.09002 * 109.47208 * 305.23485 * 4 3 2 30 30 H 1.09005 * 109.46878 * 50.00167 * 6 5 4 31 31 H 1.09000 * 109.47233 * 290.00771 * 6 5 4 32 32 H 0.96998 * 119.99929 * 180.02562 * 11 10 8 33 33 H 1.09000 * 117.49647 * 214.99878 * 16 7 6 34 34 H 1.09002 * 117.50121 * 0.02660 * 16 7 6 35 35 H 1.08994 * 117.49991 * 359.96964 * 17 7 6 36 36 H 1.08999 * 117.49905 * 145.00332 * 17 7 6 37 37 H 1.08997 * 115.54991 * 156.48320 * 18 5 4 38 38 H 1.08996 * 117.49851 * 0.02562 * 19 18 5 39 39 H 1.09005 * 117.49434 * 145.02148 * 19 18 5 40 40 H 1.09000 * 117.50027 * 214.97853 * 20 18 5 41 41 H 1.09007 * 117.50064 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8218 0.1258 6 6 3.8959 3.5563 -1.1358 7 6 4.1791 5.0415 -0.9017 8 6 3.7637 5.5783 0.4437 9 1 3.2992 4.9236 1.1663 10 6 3.9755 6.9054 0.7519 11 7 4.5397 7.7029 -0.1286 12 14 3.4612 7.5705 2.4199 13 1 2.0640 8.0681 2.3450 14 1 3.5474 6.4878 3.4326 15 1 4.3632 8.6844 2.8082 16 6 5.4406 5.6288 -1.5378 17 6 4.0625 5.9809 -2.1038 18 6 5.4596 2.8447 0.5704 19 6 6.2213 1.5178 0.5745 20 6 5.7911 2.1570 1.8963 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 1.0123 -0.9340 29 1 3.9337 0.8496 0.8385 30 1 2.8750 3.4337 -1.4976 31 1 4.5933 3.1657 -1.8768 32 1 4.6891 8.6364 0.0884 33 1 5.9699 6.4036 -0.9831 34 1 6.0685 4.9573 -2.1234 35 1 3.7845 5.5408 -3.0613 36 1 3.6854 6.9872 -1.9214 37 1 6.0185 3.7456 0.3171 38 1 5.6838 0.6280 0.2470 39 1 7.2817 1.5455 0.3236 40 1 6.5684 2.6052 2.5151 41 1 4.9704 1.6872 2.4386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:26 Heat of formation + Delta-G solvation = 41.109864 kcal Electronic energy + Delta-G solvation = -17748.035464 eV Core-core repulsion = 15243.167347 eV Total energy + Delta-G solvation = -2504.868117 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18001 -38.01643 -36.21901 -34.12331 -33.23117 -29.83612 -27.66116 -26.34625 -24.24358 -23.15287 -22.60172 -21.85184 -21.20837 -20.26976 -18.02079 -17.18863 -16.62467 -16.38319 -16.20354 -15.33888 -15.08704 -14.39757 -14.30804 -13.94084 -13.74500 -13.38984 -13.02718 -12.93093 -12.71463 -12.51514 -12.35424 -12.18173 -12.12383 -11.91007 -11.85898 -11.75838 -11.41385 -11.34166 -11.21239 -11.07864 -10.65391 -10.20632 -9.94131 -8.73640 -7.90363 -5.96614 1.43346 1.45645 1.55705 2.50297 2.90199 3.15673 3.23474 3.91764 4.00293 4.08485 4.14172 4.20041 4.29108 4.38809 4.44816 4.53196 4.67628 4.71017 4.77396 4.79509 4.82948 4.91425 4.97282 5.04653 5.08438 5.10621 5.18828 5.23318 5.31006 5.34053 5.40210 5.44569 5.47058 5.56401 5.72712 6.04011 6.23408 6.38286 6.51797 6.69035 7.08275 7.59537 9.04327 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.007784 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.498247 B = 3596.190171 C = 3813.067848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.052 3.948 5 N -0.500 5.500 6 C 0.115 3.885 7 C 0.020 3.980 8 C -0.451 4.451 9 H 0.067 0.933 10 C 0.004 3.996 11 N -0.909 5.909 12 Si 0.949 3.051 13 H -0.282 1.282 14 H -0.270 1.270 15 H -0.291 1.291 16 C -0.190 4.190 17 C -0.194 4.194 18 C 0.025 3.975 19 C -0.209 4.209 20 C -0.172 4.172 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -14.636 0.626 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.149 4.149 4 C -0.076 4.076 5 N -0.220 5.220 6 C -0.013 4.013 7 C 0.020 3.980 8 C -0.489 4.489 9 H 0.085 0.915 10 C -0.193 4.193 11 N -0.550 5.550 12 Si 0.776 3.224 13 H -0.209 1.209 14 H -0.195 1.195 15 H -0.217 1.217 16 C -0.228 4.228 17 C -0.233 4.233 18 C -0.084 4.084 19 C -0.249 4.249 20 C -0.210 4.210 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.252 -14.207 0.978 14.418 hybrid contribution 0.452 0.781 0.034 0.903 sum -1.800 -13.426 1.013 13.583 Atomic orbital electron populations 1.21756 0.95385 1.02034 1.01633 1.21449 0.96276 0.95299 1.02321 1.21564 0.94332 0.97395 1.01634 1.22300 0.95862 0.89053 1.00355 1.61629 1.16979 1.13325 1.30099 1.21429 0.98941 0.92222 0.88695 1.19128 0.97044 0.89627 0.92249 1.20846 1.35953 0.93374 0.98699 0.91527 1.25699 0.96149 0.97712 0.99758 1.70181 1.44733 1.05062 1.35012 0.85687 0.77600 0.77687 0.81384 1.20851 1.19516 1.21734 1.22725 0.91242 1.04022 1.04828 1.22723 1.01802 1.02481 0.96272 1.22443 0.89093 0.95418 1.01473 1.23611 1.01279 0.97940 1.02027 1.23013 1.03071 1.03962 0.90930 0.91504 0.93138 0.93121 0.91565 0.91436 0.92719 0.93173 0.94746 0.90026 0.91677 0.96400 0.93900 0.90288 0.92614 0.92103 0.90050 0.88703 0.87557 0.88527 0.88616 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.12 -2.37 5.93 30.60 0.18 -2.19 16 3 C -0.11 -3.04 5.23 30.59 0.16 -2.88 16 4 C 0.05 1.50 3.62 86.30 0.31 1.81 16 5 N -0.50 -18.63 3.57 -871.00 -3.11 -21.74 16 6 C 0.11 4.70 4.92 86.30 0.42 5.12 16 7 C 0.02 1.00 1.55 -52.93 -0.08 0.92 16 8 C -0.45 -24.51 8.39 25.60 0.21 -24.29 16 9 H 0.07 3.67 7.22 -2.91 -0.02 3.65 16 10 C 0.00 0.21 5.27 84.66 0.45 0.66 16 11 N -0.91 -52.18 8.59 21.45 0.18 -51.99 16 12 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 16 C -0.19 -9.56 8.73 30.62 0.27 -9.29 16 17 C -0.19 -9.81 9.38 30.62 0.29 -9.53 16 18 C 0.03 0.92 5.52 44.91 0.25 1.17 16 19 C -0.21 -5.81 9.56 30.59 0.29 -5.52 16 20 C -0.17 -5.21 9.91 30.59 0.30 -4.91 16 21 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.47 6.92 -2.39 -0.02 1.45 16 28 H 0.03 0.95 7.82 -2.39 -0.02 0.93 16 29 H 0.08 2.16 5.60 -2.39 -0.01 2.14 16 30 H 0.06 2.60 6.66 -2.38 -0.02 2.58 16 31 H 0.02 0.71 7.88 -2.39 -0.02 0.69 16 32 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.08 4.46 6.29 -2.39 -0.02 4.45 16 34 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 35 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.08 4.61 6.28 -2.39 -0.01 4.60 16 37 H 0.09 4.11 6.79 -2.39 -0.02 4.09 16 38 H 0.11 2.62 6.03 -2.39 -0.01 2.61 16 39 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.10 2.77 7.46 -2.38 -0.02 2.76 16 Total: -1.00 -58.31 315.53 3.84 -54.47 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.97 Total: 23.56 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 3.77 Total: -51.07 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.93 Total: -73.74 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -58.31 3.84 -54.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.578 kcal (2) G-P(sol) polarization free energy of solvation -58.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds