Wall clock time and date at job start Sun Mar 29 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 C 1.52997 * 109.47097 * 119.99897 * 2 1 3 5 5 N 1.46902 * 109.47184 * 174.75182 * 4 2 1 6 6 C 1.46904 * 110.99536 * 284.92185 * 5 4 2 7 7 C 1.53005 * 109.46513 * 170.00174 * 6 5 4 8 8 C 1.50700 * 115.55319 * 325.57906 * 7 6 5 9 9 H 1.08002 * 119.99373 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99970 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99612 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46598 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47303 * 300.00001 * 12 10 8 15 15 H 1.48499 * 109.47265 * 60.00207 * 12 10 8 16 16 C 1.53003 * 117.49843 * 111.25445 * 7 6 5 17 17 C 1.53000 * 117.49355 * 179.91384 * 7 6 5 18 18 C 1.46901 * 110.99990 * 160.96936 * 5 4 2 19 19 C 1.52995 * 117.49965 * 10.78009 * 18 5 4 20 20 C 1.52997 * 117.49830 * 302.15735 * 18 5 4 21 21 H 1.08994 * 109.47194 * 300.00076 * 1 2 3 22 22 H 1.09004 * 109.47115 * 60.00282 * 1 2 3 23 23 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47680 * 240.00031 * 2 1 3 25 25 H 1.09001 * 109.47066 * 295.37964 * 3 2 1 26 26 H 1.09003 * 109.47098 * 55.38212 * 3 2 1 27 27 H 1.08996 * 109.47337 * 175.38433 * 3 2 1 28 28 H 1.08996 * 109.46929 * 54.74745 * 4 2 1 29 29 H 1.09000 * 109.47105 * 294.74969 * 4 2 1 30 30 H 1.08998 * 109.47210 * 50.00533 * 6 5 4 31 31 H 1.09001 * 109.47000 * 289.99680 * 6 5 4 32 32 H 0.97006 * 120.00235 * 180.02562 * 11 10 8 33 33 H 1.08993 * 117.49911 * 214.99764 * 16 7 6 34 34 H 1.08996 * 117.49552 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.50054 * 359.97386 * 17 7 6 36 36 H 1.09000 * 117.50115 * 144.99618 * 17 7 6 37 37 H 1.09000 * 115.54655 * 156.48848 * 18 5 4 38 38 H 1.09002 * 117.49909 * 0.02562 * 19 18 5 39 39 H 1.09003 * 117.49966 * 145.01621 * 19 18 5 40 40 H 1.08996 * 117.50158 * 214.97988 * 20 18 5 41 41 H 1.09000 * 117.49888 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5035 -0.8319 1.1876 6 6 3.9132 -1.8675 0.2296 7 6 5.4246 -1.7861 0.0060 8 6 6.0144 -0.4000 0.0491 9 1 5.3765 0.4528 0.2292 10 6 7.3680 -0.2205 -0.1414 11 7 8.1446 -1.2590 -0.3603 12 14 8.0991 1.4977 -0.0873 13 1 9.5638 1.4199 -0.3192 14 1 7.4741 2.3350 -1.1424 15 1 7.8406 2.1039 1.2435 16 6 6.2809 -2.9352 0.5420 17 6 6.0502 -2.7901 -0.9643 18 6 4.0683 -1.0928 2.5184 19 6 3.0933 -1.4513 3.6416 20 6 3.7688 -0.0786 3.6241 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.7458 1.9319 -0.9285 26 1 1.6106 1.9797 0.8457 27 1 3.1268 1.4437 0.0827 28 1 1.6019 -1.7181 1.2975 29 1 1.7554 -0.1559 2.1367 30 1 3.3968 -1.7110 -0.7175 31 1 3.6568 -2.8503 0.6252 32 1 9.0971 -1.1328 -0.4940 33 1 7.2708 -2.6886 0.9258 34 1 5.7675 -3.7493 1.0535 35 1 5.3851 -3.5089 -1.4430 36 1 6.8883 -2.4481 -1.5715 37 1 5.0464 -1.5736 2.5279 38 1 2.0329 -1.4940 3.3931 39 1 3.4299 -2.1684 4.3904 40 1 4.5497 0.1075 4.3613 41 1 3.1524 0.7820 3.3642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:28 Heat of formation + Delta-G solvation = 57.139218 kcal Electronic energy + Delta-G solvation = -18122.689526 eV Core-core repulsion = 15618.516495 eV Total energy + Delta-G solvation = -2504.173032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.85809 -36.19752 -35.28772 -32.27189 -31.15992 -26.79064 -26.69875 -25.14508 -24.04183 -21.91231 -20.71600 -20.20105 -19.42632 -18.47070 -16.18802 -15.38821 -15.19223 -14.83668 -14.51474 -13.61872 -13.54568 -13.06272 -12.84126 -12.34224 -12.00971 -11.95512 -11.68978 -11.32143 -11.16736 -10.93984 -10.90877 -10.66159 -10.56704 -10.46479 -10.25106 -10.04588 -9.97911 -9.88675 -9.71527 -9.30704 -8.66539 -8.22769 -7.91912 -7.30476 -5.81338 -3.82426 3.39240 3.43481 3.47361 4.27805 4.52151 4.57654 5.12592 5.20874 5.28274 5.34147 5.44162 5.53607 5.68391 5.71725 5.87911 5.90827 5.96656 6.00842 6.04897 6.13781 6.23817 6.31140 6.36141 6.43009 6.44978 6.52508 6.57861 6.66992 6.71217 6.80922 6.91685 7.12993 7.30005 7.36334 7.75882 7.85551 7.99835 8.20108 8.30651 8.71519 9.18909 9.71624 11.15532 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.008798 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.252055 B = 3181.666619 C = 3346.933688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.139 4.139 4 C 0.053 3.947 5 N -0.480 5.480 6 C 0.103 3.897 7 C 0.025 3.975 8 C -0.442 4.442 9 H 0.075 0.925 10 C 0.050 3.950 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.292 1.292 14 H -0.279 1.279 15 H -0.278 1.278 16 C -0.195 4.195 17 C -0.190 4.190 18 C 0.059 3.941 19 C -0.239 4.239 20 C -0.178 4.178 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.012 0.988 32 H 0.255 0.745 33 H 0.108 0.892 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 1.010 3.611 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.075 4.075 5 N -0.200 5.200 6 C -0.024 4.024 7 C 0.024 3.976 8 C -0.480 4.480 9 H 0.093 0.907 10 C -0.150 4.150 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.218 1.218 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.233 4.233 17 C -0.229 4.229 18 C -0.051 4.051 19 C -0.279 4.279 20 C -0.216 4.216 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.147 0.853 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.728 1.440 3.382 11.340 hybrid contribution 0.176 -0.019 0.356 0.398 sum -10.552 1.421 3.738 11.284 Atomic orbital electron populations 1.21827 0.96075 1.01044 1.01317 1.21092 0.93961 0.97472 0.98537 1.21729 1.03532 0.94582 0.99750 1.22282 0.89171 0.98032 0.98023 1.61640 1.06524 1.46353 1.05527 1.21657 0.97084 0.89789 0.93856 1.18978 0.87357 0.91334 0.99895 1.20622 0.91664 0.91232 1.44502 0.90732 1.25048 0.97489 0.96489 0.95941 1.70017 1.04622 1.28460 1.49748 0.86645 0.77587 0.85149 0.78480 1.21808 1.20489 1.20422 1.22914 1.03939 1.00077 0.96396 1.22816 1.04092 1.02684 0.93262 1.22610 0.98359 1.00305 0.83777 1.23597 0.99335 0.99628 1.05315 1.22943 1.03204 0.92772 1.02635 0.93111 0.92866 0.93270 0.91023 0.93982 0.93980 0.90206 0.95623 0.91264 0.91969 0.96933 0.93469 0.87348 0.94552 0.94408 0.87193 0.85252 0.89215 0.89716 0.89155 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.09 -1.33 2.97 -90.62 -0.27 -1.60 16 3 C -0.14 -2.08 9.14 37.16 0.34 -1.74 16 4 C 0.05 0.82 3.01 -3.82 -0.01 0.81 16 5 N -0.48 -8.97 2.96 -226.65 -0.67 -9.65 16 6 C 0.10 2.12 4.92 -3.82 -0.02 2.10 16 7 C 0.03 0.61 1.55 -155.66 -0.24 0.37 16 8 C -0.44 -11.68 8.39 -34.44 -0.29 -11.97 16 9 H 0.07 1.99 7.22 -52.49 -0.38 1.61 16 10 C 0.05 1.34 5.27 -17.82 -0.09 1.25 16 11 N -0.89 -24.74 8.59 55.43 0.48 -24.27 16 12 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.20 -4.81 8.74 -26.69 -0.23 -5.05 16 17 C -0.19 -4.73 9.38 -26.69 -0.25 -4.98 16 18 C 0.06 1.09 5.52 -67.72 -0.37 0.72 16 19 C -0.24 -3.63 9.56 -26.74 -0.26 -3.89 16 20 C -0.18 -2.84 9.91 -26.73 -0.26 -3.10 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.14 6.61 -51.93 -0.34 0.79 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.43 7.64 -51.93 -0.40 1.04 16 28 H 0.03 0.39 7.83 -51.93 -0.41 -0.01 16 29 H 0.07 1.03 5.59 -51.93 -0.29 0.74 16 30 H 0.06 1.25 6.52 -51.93 -0.34 0.91 16 31 H 0.01 0.25 7.88 -51.93 -0.41 -0.16 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.11 2.96 6.28 -51.93 -0.33 2.63 16 34 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 3.02 6.28 -51.93 -0.33 2.70 16 37 H 0.13 2.74 6.79 -51.93 -0.35 2.38 16 38 H 0.09 1.28 6.03 -51.93 -0.31 0.97 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.39 7.46 -51.93 -0.39 1.00 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -26.61 313.57 -9.31 -35.92 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.20 Total: 5.32 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -1.62 Total: -28.43 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: -0.19 Total: -33.91 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.61 -9.31 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.059 kcal (2) G-P(sol) polarization free energy of solvation -26.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds