Wall clock time and date at job start Sun Mar 29 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 C 1.52997 * 109.47097 * 119.99897 * 2 1 3 5 5 N 1.46902 * 109.47184 * 174.75182 * 4 2 1 6 6 C 1.46904 * 110.99536 * 284.92185 * 5 4 2 7 7 C 1.53005 * 109.46513 * 170.00174 * 6 5 4 8 8 C 1.50700 * 115.55319 * 325.57906 * 7 6 5 9 9 H 1.08002 * 119.99373 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99970 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99612 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46598 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47303 * 300.00001 * 12 10 8 15 15 H 1.48499 * 109.47265 * 60.00207 * 12 10 8 16 16 C 1.53003 * 117.49843 * 111.25445 * 7 6 5 17 17 C 1.53000 * 117.49355 * 179.91384 * 7 6 5 18 18 C 1.46901 * 110.99990 * 160.96936 * 5 4 2 19 19 C 1.52995 * 117.49965 * 10.78009 * 18 5 4 20 20 C 1.52997 * 117.49830 * 302.15735 * 18 5 4 21 21 H 1.08994 * 109.47194 * 300.00076 * 1 2 3 22 22 H 1.09004 * 109.47115 * 60.00282 * 1 2 3 23 23 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47680 * 240.00031 * 2 1 3 25 25 H 1.09001 * 109.47066 * 295.37964 * 3 2 1 26 26 H 1.09003 * 109.47098 * 55.38212 * 3 2 1 27 27 H 1.08996 * 109.47337 * 175.38433 * 3 2 1 28 28 H 1.08996 * 109.46929 * 54.74745 * 4 2 1 29 29 H 1.09000 * 109.47105 * 294.74969 * 4 2 1 30 30 H 1.08998 * 109.47210 * 50.00533 * 6 5 4 31 31 H 1.09001 * 109.47000 * 289.99680 * 6 5 4 32 32 H 0.97006 * 120.00235 * 180.02562 * 11 10 8 33 33 H 1.08993 * 117.49911 * 214.99764 * 16 7 6 34 34 H 1.08996 * 117.49552 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.50054 * 359.97386 * 17 7 6 36 36 H 1.09000 * 117.50115 * 144.99618 * 17 7 6 37 37 H 1.09000 * 115.54655 * 156.48848 * 18 5 4 38 38 H 1.09002 * 117.49909 * 0.02562 * 19 18 5 39 39 H 1.09003 * 117.49966 * 145.01621 * 19 18 5 40 40 H 1.08996 * 117.50158 * 214.97988 * 20 18 5 41 41 H 1.09000 * 117.49888 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5035 -0.8319 1.1876 6 6 3.9132 -1.8675 0.2296 7 6 5.4246 -1.7861 0.0060 8 6 6.0144 -0.4000 0.0491 9 1 5.3765 0.4528 0.2292 10 6 7.3680 -0.2205 -0.1414 11 7 8.1446 -1.2590 -0.3603 12 14 8.0991 1.4977 -0.0873 13 1 9.5638 1.4199 -0.3192 14 1 7.4741 2.3350 -1.1424 15 1 7.8406 2.1039 1.2435 16 6 6.2809 -2.9352 0.5420 17 6 6.0502 -2.7901 -0.9643 18 6 4.0683 -1.0928 2.5184 19 6 3.0933 -1.4513 3.6416 20 6 3.7688 -0.0786 3.6241 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.7458 1.9319 -0.9285 26 1 1.6106 1.9797 0.8457 27 1 3.1268 1.4437 0.0827 28 1 1.6019 -1.7181 1.2975 29 1 1.7554 -0.1559 2.1367 30 1 3.3968 -1.7110 -0.7175 31 1 3.6568 -2.8503 0.6252 32 1 9.0971 -1.1328 -0.4940 33 1 7.2708 -2.6886 0.9258 34 1 5.7675 -3.7493 1.0535 35 1 5.3851 -3.5089 -1.4430 36 1 6.8883 -2.4481 -1.5715 37 1 5.0464 -1.5736 2.5279 38 1 2.0329 -1.4940 3.3931 39 1 3.4299 -2.1684 4.3904 40 1 4.5497 0.1075 4.3613 41 1 3.1524 0.7820 3.3642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:28 Heat of formation + Delta-G solvation = 45.231335 kcal Electronic energy + Delta-G solvation = -18123.205891 eV Core-core repulsion = 15618.516495 eV Total energy + Delta-G solvation = -2504.689396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27333 -38.03216 -36.46522 -33.91965 -32.97563 -28.31604 -27.84416 -27.01780 -25.47928 -23.14889 -22.64642 -21.56250 -21.04307 -20.06392 -17.90624 -17.10239 -16.63893 -16.49408 -15.86813 -15.31911 -14.95016 -14.48779 -14.34940 -13.70953 -13.58976 -13.14236 -12.96437 -12.89394 -12.79737 -12.55670 -12.43688 -12.33804 -12.06513 -11.92942 -11.89381 -11.66550 -11.41935 -11.28342 -11.19147 -11.06478 -10.62585 -10.19056 -9.92481 -8.69457 -7.88749 -5.94583 1.45965 1.46273 1.53597 2.51154 2.92253 3.17188 3.25410 3.91659 4.02322 4.07812 4.17676 4.19863 4.30163 4.41167 4.57888 4.61360 4.70040 4.73295 4.80799 4.84999 4.86966 4.93130 5.00065 5.06362 5.13368 5.14936 5.19066 5.26332 5.32006 5.36442 5.41683 5.46437 5.56401 5.66098 5.76533 6.06047 6.24478 6.40504 6.53919 6.71136 7.10538 7.61366 9.05823 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.008798 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.252055 B = 3181.666619 C = 3346.933688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.134 4.134 4 C 0.056 3.944 5 N -0.492 5.492 6 C 0.114 3.886 7 C 0.023 3.977 8 C -0.447 4.447 9 H 0.069 0.931 10 C 0.003 3.997 11 N -0.910 5.910 12 Si 0.948 3.052 13 H -0.294 1.294 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.191 4.191 17 C -0.195 4.195 18 C 0.027 3.973 19 C -0.211 4.211 20 C -0.171 4.171 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.251 0.749 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 1.585 4.427 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.192 4.192 4 C -0.072 4.072 5 N -0.212 5.212 6 C -0.013 4.013 7 C 0.023 3.977 8 C -0.485 4.485 9 H 0.087 0.913 10 C -0.194 4.194 11 N -0.551 5.551 12 Si 0.775 3.225 13 H -0.220 1.220 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.229 4.229 17 C -0.233 4.233 18 C -0.083 4.083 19 C -0.250 4.250 20 C -0.209 4.209 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.002 2.021 4.205 13.814 hybrid contribution 0.888 -0.205 0.117 0.919 sum -12.114 1.816 4.322 12.989 Atomic orbital electron populations 1.21755 0.93478 1.01925 1.02354 1.21089 0.96045 0.96598 0.97269 1.21662 1.01211 0.95425 1.00860 1.22346 0.87062 0.98711 0.99032 1.61588 1.08640 1.45582 1.05419 1.21433 0.94367 0.90743 0.94789 1.19113 0.89628 0.90143 0.98864 1.20818 0.91698 0.92212 1.43791 0.91292 1.25692 0.98081 0.99397 0.96181 1.70176 1.04405 1.29834 1.50655 0.85772 0.76627 0.81661 0.78422 1.21978 1.20150 1.20129 1.22720 1.02811 1.01085 0.96254 1.22714 1.03797 1.03753 0.93051 1.22438 0.98141 1.02952 0.84748 1.23605 0.99365 0.98973 1.03052 1.22996 1.03396 0.93311 1.01179 0.91932 0.92006 0.92491 0.92799 0.93115 0.92582 0.93697 0.94911 0.90060 0.91726 0.96540 0.93964 0.90320 0.92732 0.92218 0.90105 0.88750 0.87625 0.88655 0.88764 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 2 C -0.09 -2.45 2.97 -10.79 -0.03 -2.48 16 3 C -0.13 -3.80 9.14 71.98 0.66 -3.14 16 4 C 0.06 1.60 3.01 86.30 0.26 1.86 16 5 N -0.49 -17.89 2.96 -870.98 -2.58 -20.46 16 6 C 0.11 4.62 4.92 86.30 0.42 5.05 16 7 C 0.02 1.14 1.55 -52.92 -0.08 1.05 16 8 C -0.45 -23.99 8.39 25.60 0.21 -23.78 16 9 H 0.07 3.73 7.22 -2.91 -0.02 3.70 16 10 C 0.00 0.19 5.27 84.65 0.45 0.63 16 11 N -0.91 -52.10 8.59 21.45 0.18 -51.92 16 12 Si 0.95 44.60 29.54 68.60 2.03 46.62 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 C -0.19 -9.55 8.74 30.62 0.27 -9.28 16 17 C -0.19 -9.79 9.38 30.62 0.29 -9.51 16 18 C 0.03 0.97 5.52 44.91 0.25 1.21 16 19 C -0.21 -5.82 9.56 30.59 0.29 -5.53 16 20 C -0.17 -5.13 9.91 30.59 0.30 -4.83 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.64 6.61 -2.39 -0.02 1.62 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.58 7.64 -2.39 -0.02 1.56 16 28 H 0.03 0.90 7.83 -2.39 -0.02 0.88 16 29 H 0.08 2.13 5.59 -2.39 -0.01 2.12 16 30 H 0.06 2.56 6.52 -2.39 -0.02 2.54 16 31 H 0.02 0.65 7.88 -2.39 -0.02 0.63 16 32 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 33 H 0.08 4.44 6.28 -2.39 -0.02 4.42 16 34 H 0.05 2.48 8.05 -2.39 -0.02 2.46 16 35 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 4.57 6.28 -2.39 -0.01 4.55 16 37 H 0.09 4.05 6.79 -2.39 -0.02 4.04 16 38 H 0.11 2.60 6.03 -2.39 -0.01 2.59 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.10 2.75 7.46 -2.39 -0.02 2.73 16 Total: -1.00 -57.47 313.57 4.56 -52.91 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.98 Total: 23.68 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 3.95 Total: -50.83 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -2.39 Total: -72.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -57.47 4.56 -52.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.144 kcal (2) G-P(sol) polarization free energy of solvation -57.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds