Wall clock time and date at job start Sun Mar 29 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.57101 * 2 1 4 4 C 1.53118 * 109.52749 * 120.15786 * 2 1 3 5 5 C 1.53032 * 109.27988 * 177.56052 * 4 2 1 6 6 N 1.46853 * 109.52651 * 300.82289 * 5 4 2 7 7 C 1.46892 * 111.00199 * 185.83977 * 6 5 4 8 8 C 1.53008 * 109.47093 * 163.88645 * 7 6 5 9 9 C 1.50690 * 115.54868 * 306.36788 * 8 7 6 10 10 H 1.07999 * 120.00359 * 144.25624 * 9 8 7 11 11 C 1.37885 * 120.00348 * 324.25458 * 9 8 7 12 12 N 1.31514 * 119.99414 * 351.16269 * 11 9 8 13 13 Si 1.86797 * 120.00220 * 171.15844 * 11 9 8 14 14 H 1.48505 * 109.46706 * 60.00251 * 13 11 9 15 15 H 1.48498 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47152 * 300.00223 * 13 11 9 17 17 C 1.53000 * 117.49750 * 160.69489 * 8 7 6 18 18 C 1.53000 * 117.49607 * 92.03626 * 8 7 6 19 19 C 1.46847 * 111.19711 * 61.73985 * 6 5 4 20 20 C 1.53042 * 109.52315 * 298.26347 * 19 6 5 21 21 H 1.09002 * 109.47192 * 299.83861 * 1 2 3 22 22 H 1.08991 * 109.47560 * 59.84153 * 1 2 3 23 23 H 1.09004 * 109.46981 * 179.84644 * 1 2 3 24 24 H 1.09004 * 109.47049 * 180.16413 * 3 2 1 25 25 H 1.08995 * 109.47485 * 300.15922 * 3 2 1 26 26 H 1.08995 * 109.47208 * 60.16309 * 3 2 1 27 27 H 1.09002 * 109.50143 * 57.61858 * 4 2 1 28 28 H 1.08997 * 109.53621 * 297.52512 * 4 2 1 29 29 H 1.09001 * 109.46510 * 180.81045 * 5 4 2 30 30 H 1.08999 * 109.46505 * 60.83667 * 5 4 2 31 31 H 1.08996 * 109.47302 * 283.88296 * 7 6 5 32 32 H 1.09000 * 109.47468 * 43.89051 * 7 6 5 33 33 H 0.97003 * 119.99325 * 185.01398 * 12 11 9 34 34 H 1.08999 * 117.50159 * 0.02562 * 17 8 7 35 35 H 1.09002 * 117.49817 * 145.02106 * 17 8 7 36 36 H 1.08995 * 117.49999 * 214.97812 * 18 8 7 37 37 H 1.09002 * 117.50440 * 359.97438 * 18 8 7 38 38 H 1.09001 * 109.46346 * 58.27377 * 19 6 5 39 39 H 1.08997 * 109.46257 * 178.24487 * 19 6 5 40 40 H 1.09002 * 109.49833 * 299.23752 * 20 19 6 41 41 H 1.08997 * 109.53231 * 179.13985 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0418 -0.7250 1.2478 5 6 3.5708 -0.7751 1.2115 6 7 4.0103 -1.4787 -0.0002 7 6 5.4671 -1.6675 -0.0002 8 6 5.8440 -2.7270 -1.0378 9 6 5.1252 -4.0453 -0.9112 10 1 4.8535 -4.5996 -1.7974 11 6 4.8143 -4.5442 0.3361 12 7 5.2933 -3.9635 1.4145 13 14 3.7128 -6.0445 0.4941 14 1 4.3394 -7.1945 -0.2063 15 1 3.5337 -6.3780 1.9300 16 1 2.3905 -5.7542 -0.1160 17 6 7.2952 -2.7571 -1.5215 18 6 6.1899 -2.2434 -2.4475 19 6 3.5708 -0.7750 -1.2118 20 6 2.0416 -0.7249 -1.2478 21 1 -0.3634 0.5113 0.8914 22 1 -0.3634 0.5162 -0.8885 23 1 -0.3633 -1.0277 -0.0028 24 1 3.1325 1.4397 -0.0029 25 1 1.6778 1.9570 -0.8885 26 1 1.6824 1.9552 0.8914 27 1 1.6448 -1.7400 1.2674 28 1 1.7162 -0.1896 2.1396 29 1 3.9379 -1.3033 2.0915 30 1 3.9674 0.2402 1.2058 31 1 5.9555 -0.7255 -0.2490 32 1 5.7911 -1.9951 0.9876 33 1 5.1351 -4.3559 2.2874 34 1 7.9815 -2.0225 -1.1003 35 1 7.7299 -3.7306 -1.7485 36 1 5.8980 -2.8790 -3.2834 37 1 6.1486 -1.1706 -2.6360 38 1 3.9673 0.2403 -1.2061 39 1 3.9378 -1.3031 -2.0918 40 1 1.6447 -1.7399 -1.2675 41 1 1.7155 -0.1893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:07 Heat of formation + Delta-G solvation = 3.367019 kcal Electronic energy + Delta-G solvation = -18433.491251 eV Core-core repulsion = 15926.986481 eV Total energy + Delta-G solvation = -2506.504769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55711 -38.36793 -35.27009 -33.98687 -31.63175 -29.59540 -28.14260 -27.44825 -25.70516 -24.03222 -22.82129 -22.31597 -20.74416 -19.07430 -18.01902 -16.61141 -16.39850 -15.81834 -15.63591 -15.44302 -15.08040 -14.91842 -14.66964 -14.03307 -13.39705 -13.17688 -13.08595 -12.80429 -12.73060 -12.69064 -12.63726 -12.38683 -12.27310 -12.18061 -11.96302 -11.83085 -11.44276 -11.23772 -10.96812 -10.90552 -10.83736 -10.37456 -9.86257 -8.61535 -7.86817 -5.94552 1.45127 1.48556 1.53815 2.52818 3.13059 3.42299 3.77388 3.87452 3.96229 3.99363 4.35051 4.43412 4.48183 4.52200 4.59039 4.63261 4.76615 4.81560 4.88071 4.88150 4.92095 4.92475 4.97457 5.01708 5.10315 5.12763 5.17439 5.21155 5.26376 5.39708 5.45683 5.48080 5.52440 5.57633 5.67222 5.71048 6.09383 6.50283 6.70658 6.81306 7.04348 7.66092 9.12580 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.010090 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.728528 B = 2774.339654 C = 3423.173494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.097 4.097 5 C 0.065 3.935 6 N -0.515 5.515 7 C 0.117 3.883 8 C 0.043 3.957 9 C -0.490 4.490 10 H 0.037 0.963 11 C 0.056 3.944 12 N -0.890 5.890 13 Si 0.937 3.063 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.279 1.279 17 C -0.210 4.210 18 C -0.196 4.196 19 C 0.060 3.940 20 C -0.098 4.098 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.024 0.976 31 H -0.013 1.013 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 9.743 -1.277 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 C -0.193 4.193 4 C -0.135 4.135 5 C -0.063 4.063 6 N -0.239 5.239 7 C -0.011 4.011 8 C 0.042 3.958 9 C -0.527 4.527 10 H 0.055 0.945 11 C -0.145 4.145 12 N -0.528 5.528 13 Si 0.765 3.235 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.205 1.205 17 C -0.249 4.249 18 C -0.233 4.233 19 C -0.068 4.068 20 C -0.136 4.136 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.592 9.300 -1.054 12.052 hybrid contribution 0.325 -0.431 0.082 0.546 sum -7.268 8.869 -0.972 11.508 Atomic orbital electron populations 1.21781 0.93305 1.01495 1.02379 1.20575 0.96159 0.95381 0.94349 1.21877 1.00375 0.94748 1.02266 1.21576 0.94054 0.99848 0.97988 1.21958 0.96170 0.94980 0.93168 1.61476 1.13076 1.48321 1.00992 1.21434 0.86235 0.92097 1.01315 1.19031 0.91895 0.94918 0.89955 1.20386 1.36835 1.03829 0.91629 0.94483 1.25205 0.95551 0.98287 0.95502 1.69897 1.45512 1.39391 0.97976 0.85977 0.80336 0.80682 0.76538 1.20648 1.21221 1.20508 1.22972 0.94216 1.00294 1.07388 1.22886 1.06047 0.98762 0.95599 1.22078 0.96066 0.94865 0.93762 1.21589 0.94246 0.99914 0.97843 0.91743 0.91635 0.93565 0.93942 0.91725 0.91812 0.93578 0.90616 0.93332 0.95760 0.99556 0.89588 0.93598 0.90845 0.91333 0.90975 0.90134 0.95985 0.92224 0.93401 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.49 71.98 0.61 -2.34 16 2 C -0.06 -1.75 0.77 -52.10 -0.04 -1.80 16 3 C -0.14 -3.21 7.90 71.98 0.57 -2.64 16 4 C -0.10 -3.09 4.88 30.64 0.15 -2.94 16 5 C 0.07 2.49 5.19 86.32 0.45 2.94 16 6 N -0.52 -22.30 4.17 -896.36 -3.74 -26.05 16 7 C 0.12 5.56 4.05 86.31 0.35 5.91 16 8 C 0.04 2.13 1.57 -52.93 -0.08 2.04 16 9 C -0.49 -27.04 8.72 25.60 0.22 -26.82 16 10 H 0.04 2.09 7.83 -2.91 -0.02 2.07 16 11 C 0.06 3.05 5.18 84.66 0.44 3.48 16 12 N -0.89 -49.25 10.71 21.45 0.23 -49.02 16 13 Si 0.94 44.46 29.55 68.60 2.03 46.48 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 C -0.21 -9.66 9.96 30.62 0.30 -9.36 16 18 C -0.20 -8.50 8.39 30.62 0.26 -8.24 16 19 C 0.06 2.26 5.01 86.33 0.43 2.69 16 20 C -0.10 -3.10 4.88 30.65 0.15 -2.95 16 21 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 24 H 0.04 1.14 4.92 -2.38 -0.01 1.13 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.06 7.96 -2.39 -0.02 2.04 16 30 H 0.02 0.87 6.51 -2.39 -0.02 0.85 16 31 H -0.01 -0.61 7.99 -2.39 -0.02 -0.63 16 32 H 0.09 4.57 5.75 -2.39 -0.01 4.56 16 33 H 0.25 13.68 8.32 -92.71 -0.77 12.91 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.08 3.18 8.06 -2.39 -0.02 3.16 16 38 H 0.02 0.78 6.51 -2.39 -0.02 0.77 16 39 H 0.06 2.44 6.02 -2.39 -0.01 2.42 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -57.23 308.31 3.29 -53.94 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.97 Total: 14.67 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.81 Total: -40.03 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -3.51 Total: -75.07 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -57.23 3.29 -53.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.307 kcal (2) G-P(sol) polarization free energy of solvation -57.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds