Wall clock time and date at job start Sun Mar 29 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.53089 * 2 1 4 4 C 1.53119 * 109.50145 * 239.90178 * 2 1 3 5 5 C 1.53112 * 109.15890 * 182.40452 * 4 2 1 6 6 C 1.53036 * 109.27884 * 57.65205 * 5 4 2 7 7 N 1.46848 * 109.52601 * 300.82123 * 6 5 4 8 8 C 1.46901 * 111.00035 * 185.84091 * 7 6 5 9 9 C 1.53000 * 109.47241 * 52.45669 * 8 7 6 10 10 C 1.50703 * 115.54932 * 53.72139 * 9 8 7 11 11 H 1.07998 * 119.99565 * 215.78831 * 10 9 8 12 12 C 1.37868 * 119.99981 * 35.51931 * 10 9 8 13 13 N 1.31516 * 120.00311 * 357.26191 * 12 10 9 14 14 Si 1.86805 * 119.99864 * 177.26225 * 12 10 9 15 15 H 1.48496 * 109.47095 * 4.99557 * 14 12 10 16 16 H 1.48501 * 109.47056 * 125.00166 * 14 12 10 17 17 H 1.48502 * 109.46879 * 244.99659 * 14 12 10 18 18 C 1.52996 * 117.50061 * 199.39732 * 9 8 7 19 19 C 1.53000 * 117.49715 * 268.05771 * 9 8 7 20 20 C 1.46842 * 111.19578 * 61.73908 * 7 6 5 21 21 H 1.08997 * 109.46962 * 299.90099 * 1 2 3 22 22 H 1.08993 * 109.47206 * 59.90328 * 1 2 3 23 23 H 1.08999 * 109.46823 * 179.90495 * 1 2 3 24 24 H 1.09008 * 109.46762 * 180.10218 * 3 2 1 25 25 H 1.09001 * 109.46894 * 300.09458 * 3 2 1 26 26 H 1.09001 * 109.47555 * 60.10008 * 3 2 1 27 27 H 1.09007 * 109.51913 * 302.30722 * 4 2 1 28 28 H 1.08999 * 109.52480 * 62.49716 * 4 2 1 29 29 H 1.09001 * 109.50348 * 177.59680 * 5 4 2 30 30 H 1.08997 * 109.50519 * 297.67140 * 5 4 2 31 31 H 1.09004 * 109.46195 * 180.80325 * 6 5 4 32 32 H 1.08993 * 109.46357 * 60.83975 * 6 5 4 33 33 H 1.08998 * 109.46739 * 292.45548 * 8 7 6 34 34 H 1.08999 * 109.47063 * 172.45353 * 8 7 6 35 35 H 0.96998 * 119.99906 * 175.00343 * 13 12 10 36 36 H 1.08994 * 117.50105 * 215.00182 * 18 9 8 37 37 H 1.09004 * 117.49450 * 0.02562 * 18 9 8 38 38 H 1.08998 * 117.50065 * 359.97210 * 19 9 8 39 39 H 1.08998 * 117.50501 * 144.97564 * 19 9 8 40 40 H 1.09000 * 109.45769 * 58.28062 * 20 7 6 41 41 H 1.08999 * 109.46182 * 178.25254 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0413 -0.7238 -1.2487 5 6 3.5711 -0.7719 -1.2108 6 6 4.0229 -1.4729 0.0724 7 7 3.5093 -0.7420 1.2379 8 6 4.0373 -1.3058 2.4874 9 6 5.5631 -1.3856 2.4063 10 6 6.2634 -0.0985 2.0540 11 1 7.1495 -0.1174 1.4369 12 6 5.7697 1.1034 2.5148 13 7 4.6578 1.1320 3.2166 14 14 6.6801 2.6915 2.1423 15 1 7.8260 2.4057 1.2421 16 1 5.7568 3.6478 1.4802 17 1 7.1811 3.2835 3.4088 18 6 6.2734 -2.3344 3.3737 19 6 6.1757 -2.6881 1.8876 20 6 2.0410 -0.7234 1.2480 21 1 -0.3633 0.5123 0.8909 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3633 -1.0277 -0.0017 24 1 3.1317 1.4407 -0.0018 25 1 1.6774 1.9566 -0.8892 26 1 1.6803 1.9557 0.8909 27 1 1.6452 -1.7392 -1.2689 28 1 1.7157 -0.1871 -2.1398 29 1 3.9395 -1.3234 -2.0758 30 1 3.9678 0.2431 -1.2306 31 1 5.1121 -1.4962 0.1094 32 1 3.6375 -2.4924 0.0843 33 1 3.6286 -2.3052 2.6364 34 1 3.7509 -0.6677 3.3235 35 1 4.3490 1.9668 3.6021 36 1 7.2471 -2.0278 3.7554 37 1 5.6536 -2.9022 4.0677 38 1 5.4919 -3.4883 1.6046 39 1 7.0852 -2.6141 1.2913 40 1 1.6649 -1.7464 1.2545 41 1 1.6906 -0.2020 2.1388 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:54 Heat of formation + Delta-G solvation = 19.332474 kcal Electronic energy + Delta-G solvation = -18637.041776 eV Core-core repulsion = 16131.229321 eV Total energy + Delta-G solvation = -2505.812455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.00818 -36.61501 -33.29740 -31.97512 -31.29799 -26.72742 -26.20138 -25.71185 -25.12629 -22.17458 -21.22243 -20.61188 -18.71848 -17.72920 -16.07321 -14.84035 -14.57856 -14.19500 -14.15749 -13.73026 -13.65747 -13.19263 -12.72937 -12.48086 -12.01386 -11.83226 -11.45050 -11.37556 -11.13087 -10.95605 -10.90264 -10.69095 -10.46498 -10.35352 -10.33467 -10.04365 -9.87271 -9.66055 -9.55151 -9.19090 -8.74059 -8.49379 -8.00002 -6.90124 -5.75693 -3.86702 3.36450 3.45513 3.48452 4.51711 4.88581 5.17267 5.24101 5.34494 5.47349 5.68127 5.71224 5.91317 5.97086 5.99998 6.11239 6.16251 6.16579 6.30004 6.32380 6.37076 6.40747 6.48343 6.48491 6.60823 6.66744 6.72025 6.74728 6.79870 6.87644 6.93392 6.99664 7.06552 7.24016 7.31676 7.41024 7.75195 8.14846 8.38456 8.45906 8.67046 9.08240 9.74120 11.19509 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.011059 C = 0.008844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.307996 B = 2531.307165 C = 3165.262898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.106 4.106 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.485 5.485 8 C 0.110 3.890 9 C 0.065 3.935 10 C -0.478 4.478 11 H 0.053 0.947 12 C 0.090 3.910 13 N -0.861 5.861 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.288 1.288 18 C -0.210 4.210 19 C -0.220 4.220 20 C 0.074 3.926 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.003 0.997 33 H -0.026 1.026 34 H 0.118 0.882 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.008 0.992 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -2.324 -5.476 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.184 4.184 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.208 5.208 8 C -0.017 4.017 9 C 0.064 3.936 10 C -0.515 4.515 11 H 0.071 0.929 12 C -0.114 4.114 13 N -0.498 5.498 14 Si 0.714 3.286 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.214 1.214 18 C -0.249 4.249 19 C -0.257 4.257 20 C -0.055 4.055 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.021 0.979 33 H -0.008 1.008 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.215 -1.683 -5.466 8.446 hybrid contribution 0.205 -0.177 -0.075 0.282 sum -6.010 -1.860 -5.541 8.383 Atomic orbital electron populations 1.21837 0.95701 1.00854 1.01201 1.20539 0.93650 0.96704 0.95187 1.21717 1.03491 0.93775 0.99408 1.21614 0.96576 0.99174 0.96957 1.21626 0.94787 1.01894 0.97177 1.22111 1.01837 0.92591 0.90438 1.61577 1.04068 1.53295 1.01815 1.21811 0.93418 0.93190 0.93259 1.19023 0.91114 0.88303 0.95173 1.20299 1.10032 0.88996 1.32206 0.92927 1.24730 0.93760 0.98049 0.94857 1.69839 1.19862 1.25780 1.34279 0.86670 0.79734 0.84303 0.77932 1.20145 1.21079 1.21422 1.23013 1.02643 1.08086 0.91166 1.22969 1.02920 1.02742 0.97085 1.21976 0.90064 0.96439 0.97007 0.92850 0.93169 0.93428 0.90197 0.94847 0.93386 0.93219 0.92955 0.93100 0.90900 0.89025 0.97912 1.00772 0.86453 0.93568 0.90537 0.92071 0.92008 0.90915 0.97404 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.48 37.16 0.32 -1.58 16 2 C -0.06 -0.99 0.77 -154.43 -0.12 -1.11 16 3 C -0.13 -2.22 8.04 37.16 0.30 -1.93 16 4 C -0.11 -1.64 4.79 -26.61 -0.13 -1.77 16 5 C -0.12 -2.03 5.74 -26.65 -0.15 -2.18 16 6 C 0.06 1.18 4.76 -3.83 -0.02 1.16 16 7 N -0.49 -10.47 3.42 -234.68 -0.80 -11.27 16 8 C 0.11 2.59 4.06 -3.82 -0.02 2.58 16 9 C 0.06 1.57 1.14 -155.66 -0.18 1.39 16 10 C -0.48 -12.69 8.22 -34.44 -0.28 -12.97 16 11 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 12 C 0.09 2.37 5.29 -17.82 -0.09 2.28 16 13 N -0.86 -22.88 10.19 55.43 0.56 -22.31 16 14 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C -0.21 -4.80 9.96 -26.70 -0.27 -5.06 16 19 C -0.22 -4.81 8.19 -26.69 -0.22 -5.03 16 20 C 0.07 1.41 4.18 -3.84 -0.02 1.39 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.64 6.01 -51.92 -0.31 1.33 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.36 6.58 -51.93 -0.34 1.02 16 31 H 0.09 2.03 5.31 -51.93 -0.28 1.75 16 32 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 33 H -0.03 -0.59 8.08 -51.93 -0.42 -1.01 16 34 H 0.12 3.05 5.96 -51.93 -0.31 2.74 16 35 H 0.25 6.57 8.32 -40.82 -0.34 6.23 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -25.96 308.27 -9.03 -35.00 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.54 Total: 0.81 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -0.88 Total: -22.84 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.24 Total: -33.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -25.96 -9.03 -35.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.330 kcal (2) G-P(sol) polarization free energy of solvation -25.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds