Wall clock time and date at job start Sun Mar 29 2020 22:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47196 * 120.00325 * 2 1 3 5 5 H 1.09000 * 110.72894 * 59.64849 * 4 2 1 6 6 C 1.54937 * 110.66634 * 296.55427 * 4 2 1 7 7 C 1.54598 * 102.92249 * 204.14883 * 6 4 2 8 8 C 1.53992 * 105.13879 * 21.96137 * 7 6 4 9 9 N 1.47906 * 107.05898 * 1.22258 * 8 7 6 10 10 C 1.46900 * 110.99949 * 214.15987 * 9 8 7 11 11 C 1.53002 * 109.47293 * 77.01005 * 10 9 8 12 12 C 1.50701 * 115.54752 * 304.47656 * 11 10 9 13 13 H 1.08003 * 119.99622 * 95.43067 * 12 11 10 14 14 C 1.37879 * 120.00068 * 275.69763 * 12 11 10 15 15 N 1.31508 * 120.00024 * 191.47695 * 14 12 11 16 16 Si 1.86797 * 119.99757 * 11.48476 * 14 12 11 17 17 H 1.48505 * 109.47345 * 93.75815 * 16 14 12 18 18 H 1.48503 * 109.46729 * 213.75749 * 16 14 12 19 19 H 1.48499 * 109.47560 * 333.75601 * 16 14 12 20 20 C 1.52999 * 117.49859 * 90.14919 * 11 10 9 21 21 C 1.52994 * 117.49508 * 158.81101 * 11 10 9 22 22 H 1.09001 * 109.46739 * 300.00131 * 1 2 3 23 23 H 1.08998 * 109.47372 * 59.99661 * 1 2 3 24 24 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46739 * 239.99869 * 2 1 3 26 26 H 1.09007 * 109.46975 * 182.01235 * 3 2 1 27 27 H 1.09003 * 109.47106 * 302.00381 * 3 2 1 28 28 H 1.08994 * 109.47491 * 62.00644 * 3 2 1 29 29 H 1.09001 * 110.72331 * 85.79458 * 6 4 2 30 30 H 1.08993 * 110.87943 * 322.58495 * 6 4 2 31 31 H 1.08991 * 110.31142 * 263.04258 * 7 6 4 32 32 H 1.09010 * 110.30315 * 140.87208 * 7 6 4 33 33 H 1.08991 * 109.91558 * 241.86993 * 8 7 6 34 34 H 1.09004 * 110.08144 * 120.66613 * 8 7 6 35 35 H 1.09000 * 109.46985 * 317.00750 * 10 9 8 36 36 H 1.09001 * 109.47149 * 197.01104 * 10 9 8 37 37 H 0.97001 * 119.99999 * 180.02562 * 15 14 12 38 38 H 1.08994 * 117.49644 * 214.99936 * 20 11 10 39 39 H 1.09000 * 117.50075 * 0.02562 * 20 11 10 40 40 H 1.08997 * 117.50351 * 359.97314 * 21 11 10 41 41 H 1.09003 * 117.50100 * 144.99637 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6829 -1.7509 1.2729 6 6 1.6113 0.0359 2.5311 7 6 2.6689 -0.4109 3.5665 8 6 3.8748 -0.8811 2.7323 9 7 3.5235 -0.6793 1.3098 10 6 4.1147 -1.7278 0.4677 11 6 3.3012 -3.0158 0.6105 12 6 3.1353 -3.5269 2.0184 13 1 2.2494 -3.2763 2.5830 14 6 4.1170 -4.3100 2.5877 15 7 3.8823 -4.9406 3.7176 16 14 5.7805 -4.4751 1.7540 17 1 6.7174 -3.4686 2.3148 18 1 6.3193 -5.8386 1.9901 19 1 5.6272 -4.2493 0.2943 20 6 2.1372 -3.2274 -0.3597 21 6 3.4179 -4.0527 -0.5084 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1295 1.4426 -0.0361 27 1 1.6476 1.9666 -0.8715 28 1 1.7064 1.9458 0.9074 29 1 0.6126 -0.2694 2.8436 30 1 1.6530 1.1141 2.3777 31 1 2.2835 -1.2320 4.1707 32 1 2.9529 0.4274 4.2028 33 1 4.0675 -1.9372 2.9209 34 1 4.7567 -0.2921 2.9842 35 1 5.1422 -1.9103 0.7823 36 1 4.1054 -1.4058 -0.5736 37 1 4.5731 -5.4912 4.1183 38 1 1.2515 -3.7364 0.0204 39 1 1.9512 -2.4493 -1.1000 40 1 4.0738 -3.8172 -1.3465 41 1 3.3746 -5.1047 -0.2263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088836919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:19 Heat of formation + Delta-G solvation = 26.069558 kcal Electronic energy + Delta-G solvation = -18878.545794 eV Core-core repulsion = 16373.025480 eV Total energy + Delta-G solvation = -2505.520313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39703 -36.21191 -34.08775 -32.19570 -30.86114 -27.10659 -26.74613 -25.94279 -24.76794 -22.20406 -21.34161 -19.98317 -19.31802 -17.75169 -16.49749 -15.34271 -14.95801 -14.52422 -14.11543 -13.79925 -13.41165 -13.10831 -12.96852 -12.59827 -12.35986 -12.01147 -11.59783 -11.52554 -11.14222 -10.95625 -10.79666 -10.60954 -10.55878 -10.52300 -10.33074 -10.23706 -10.03052 -9.70197 -9.53600 -9.39735 -8.90375 -8.63445 -8.39161 -7.31562 -6.17113 -4.10825 3.26405 3.37050 3.44006 4.39544 4.79415 5.04064 5.13992 5.28252 5.38381 5.65642 5.66333 5.72172 5.81615 5.89377 5.98533 6.09284 6.12116 6.17840 6.21860 6.25046 6.33652 6.37079 6.40914 6.53008 6.56201 6.60308 6.63691 6.73894 6.78927 6.85555 6.86139 6.98774 7.09575 7.11947 7.17559 7.41524 7.71480 7.90909 8.03234 8.45436 8.84869 9.45789 10.93082 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.010792 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.449730 B = 2594.010981 C = 2946.766734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.064 3.936 5 H 0.092 0.908 6 C -0.120 4.120 7 C -0.120 4.120 8 C 0.013 3.987 9 N -0.501 5.501 10 C 0.077 3.923 11 C -0.028 4.028 12 C -0.479 4.479 13 H 0.078 0.922 14 C 0.081 3.919 15 N -0.891 5.891 16 Si 0.858 3.142 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.244 1.244 20 C -0.183 4.183 21 C -0.188 4.188 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 8.645 -5.474 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.044 4.044 5 H 0.109 0.891 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.114 4.114 9 N -0.223 5.223 10 C -0.052 4.052 11 C -0.030 4.030 12 C -0.516 4.516 13 H 0.096 0.904 14 C -0.122 4.122 15 N -0.528 5.528 16 Si 0.685 3.315 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.167 1.167 20 C -0.220 4.220 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.637 9.026 -5.512 10.900 hybrid contribution 0.724 -1.066 -0.029 1.289 sum -1.913 7.960 -5.540 9.886 Atomic orbital electron populations 1.21815 0.96062 1.01452 1.00870 1.20954 0.94306 0.96276 0.98369 1.21770 1.02058 0.95704 0.99863 1.22949 0.88864 0.99801 0.92814 0.89061 1.22556 0.97846 0.99799 0.95615 1.22222 0.96239 0.99738 0.97649 1.23236 0.96105 1.04547 0.87556 1.64970 1.07315 1.42765 1.07245 1.21892 0.97424 0.89968 0.95866 1.20076 0.96969 0.93702 0.92236 1.20160 1.06085 1.30341 0.95050 0.90449 1.24898 0.98493 0.94154 0.94688 1.69932 1.33837 1.29505 1.19479 0.87167 0.84760 0.77187 0.82417 1.20608 1.21937 1.16733 1.22930 0.92959 1.02663 1.03439 1.22933 1.00172 0.97749 1.01791 0.92911 0.93496 0.92840 0.91773 0.91701 0.94589 0.93051 0.92517 0.91640 0.91652 0.93125 0.87548 0.93397 0.92568 0.93180 0.92585 0.90069 0.90923 0.91407 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.01 37.16 0.33 -1.62 16 2 C -0.08 -1.23 2.61 -90.62 -0.24 -1.47 16 3 C -0.14 -1.95 8.72 37.16 0.32 -1.62 16 4 C 0.06 1.15 1.31 -65.79 -0.09 1.06 16 5 H 0.09 1.89 3.90 -51.93 -0.20 1.68 16 6 C -0.12 -2.02 5.42 -24.87 -0.13 -2.16 16 7 C -0.12 -2.22 6.93 -25.37 -0.18 -2.39 16 8 C 0.01 0.26 5.98 -2.75 -0.02 0.25 16 9 N -0.50 -9.74 4.47 -222.63 -0.99 -10.74 16 10 C 0.08 1.59 5.25 -3.82 -0.02 1.57 16 11 C -0.03 -0.61 0.05 -155.66 -0.01 -0.61 16 12 C -0.48 -12.23 5.59 -34.44 -0.19 -12.42 16 13 H 0.08 2.19 7.54 -52.48 -0.40 1.79 16 14 C 0.08 2.17 4.69 -17.82 -0.08 2.09 16 15 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 16 Si 0.86 20.59 25.44 -169.99 -4.32 16.27 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.24 -5.53 5.41 56.52 0.31 -5.22 16 20 C -0.18 -3.61 7.86 -26.69 -0.21 -3.82 16 21 C -0.19 -3.94 7.27 -26.69 -0.19 -4.13 16 22 H 0.05 0.68 7.31 -51.93 -0.38 0.30 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.04 6.48 -51.93 -0.34 0.70 16 26 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.71 5.96 -51.93 -0.31 0.40 16 29 H 0.06 0.91 8.03 -51.93 -0.42 0.50 16 30 H 0.07 1.02 5.70 -51.93 -0.30 0.72 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.11 2.56 4.24 -51.93 -0.22 2.34 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.22 6.07 -51.93 -0.31 0.90 16 36 H 0.05 0.97 8.10 -51.93 -0.42 0.54 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.30 6.39 -51.93 -0.33 0.97 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.81 8.01 -51.93 -0.42 1.39 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -26.55 293.00 -7.88 -34.43 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.05 Total: 5.87 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -0.70 Total: -25.28 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.22 Total: -35.70 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.32 Total: 16.27 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.55 -7.88 -34.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.496 kcal (2) G-P(sol) polarization free energy of solvation -26.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds