Wall clock time and date at job start Sun Mar 29 2020 22:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47196 * 120.00325 * 2 1 3 5 5 H 1.09000 * 110.72894 * 59.64849 * 4 2 1 6 6 C 1.54937 * 110.66634 * 296.55427 * 4 2 1 7 7 C 1.54598 * 102.92249 * 204.14883 * 6 4 2 8 8 C 1.53992 * 105.13879 * 21.96137 * 7 6 4 9 9 N 1.47906 * 107.05898 * 1.22258 * 8 7 6 10 10 C 1.46900 * 110.99949 * 214.15987 * 9 8 7 11 11 C 1.53002 * 109.47293 * 77.01005 * 10 9 8 12 12 C 1.50701 * 115.54752 * 304.47656 * 11 10 9 13 13 H 1.08003 * 119.99622 * 95.43067 * 12 11 10 14 14 C 1.37879 * 120.00068 * 275.69763 * 12 11 10 15 15 N 1.31508 * 120.00024 * 191.47695 * 14 12 11 16 16 Si 1.86797 * 119.99757 * 11.48476 * 14 12 11 17 17 H 1.48505 * 109.47345 * 93.75815 * 16 14 12 18 18 H 1.48503 * 109.46729 * 213.75749 * 16 14 12 19 19 H 1.48499 * 109.47560 * 333.75601 * 16 14 12 20 20 C 1.52999 * 117.49859 * 90.14919 * 11 10 9 21 21 C 1.52994 * 117.49508 * 158.81101 * 11 10 9 22 22 H 1.09001 * 109.46739 * 300.00131 * 1 2 3 23 23 H 1.08998 * 109.47372 * 59.99661 * 1 2 3 24 24 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46739 * 239.99869 * 2 1 3 26 26 H 1.09007 * 109.46975 * 182.01235 * 3 2 1 27 27 H 1.09003 * 109.47106 * 302.00381 * 3 2 1 28 28 H 1.08994 * 109.47491 * 62.00644 * 3 2 1 29 29 H 1.09001 * 110.72331 * 85.79458 * 6 4 2 30 30 H 1.08993 * 110.87943 * 322.58495 * 6 4 2 31 31 H 1.08991 * 110.31142 * 263.04258 * 7 6 4 32 32 H 1.09010 * 110.30315 * 140.87208 * 7 6 4 33 33 H 1.08991 * 109.91558 * 241.86993 * 8 7 6 34 34 H 1.09004 * 110.08144 * 120.66613 * 8 7 6 35 35 H 1.09000 * 109.46985 * 317.00750 * 10 9 8 36 36 H 1.09001 * 109.47149 * 197.01104 * 10 9 8 37 37 H 0.97001 * 119.99999 * 180.02562 * 15 14 12 38 38 H 1.08994 * 117.49644 * 214.99936 * 20 11 10 39 39 H 1.09000 * 117.50075 * 0.02562 * 20 11 10 40 40 H 1.08997 * 117.50351 * 359.97314 * 21 11 10 41 41 H 1.09003 * 117.50100 * 144.99637 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6829 -1.7509 1.2729 6 6 1.6113 0.0359 2.5311 7 6 2.6689 -0.4109 3.5665 8 6 3.8748 -0.8811 2.7323 9 7 3.5235 -0.6793 1.3098 10 6 4.1147 -1.7278 0.4677 11 6 3.3012 -3.0158 0.6105 12 6 3.1353 -3.5269 2.0184 13 1 2.2494 -3.2763 2.5830 14 6 4.1170 -4.3100 2.5877 15 7 3.8823 -4.9406 3.7176 16 14 5.7805 -4.4751 1.7540 17 1 6.7174 -3.4686 2.3148 18 1 6.3193 -5.8386 1.9901 19 1 5.6272 -4.2493 0.2943 20 6 2.1372 -3.2274 -0.3597 21 6 3.4179 -4.0527 -0.5084 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1295 1.4426 -0.0361 27 1 1.6476 1.9666 -0.8715 28 1 1.7064 1.9458 0.9074 29 1 0.6126 -0.2694 2.8436 30 1 1.6530 1.1141 2.3777 31 1 2.2835 -1.2320 4.1707 32 1 2.9529 0.4274 4.2028 33 1 4.0675 -1.9372 2.9209 34 1 4.7567 -0.2921 2.9842 35 1 5.1422 -1.9103 0.7823 36 1 4.1054 -1.4058 -0.5736 37 1 4.5731 -5.4912 4.1183 38 1 1.2515 -3.7364 0.0204 39 1 1.9512 -2.4493 -1.1000 40 1 4.0738 -3.8172 -1.3465 41 1 3.3746 -5.1047 -0.2263 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088836919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:18 Heat of formation + Delta-G solvation = 10.690535 kcal Electronic energy + Delta-G solvation = -18879.212678 eV Core-core repulsion = 16373.025480 eV Total energy + Delta-G solvation = -2506.187198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94824 -37.81885 -35.41934 -34.23926 -32.39854 -28.58672 -27.93093 -27.75338 -26.42500 -23.71247 -22.83159 -21.61776 -20.99783 -19.23246 -18.36466 -16.86263 -16.69867 -16.18697 -15.59975 -15.25841 -14.92890 -14.80921 -14.63288 -14.22036 -13.70152 -13.50332 -13.13807 -12.87327 -12.71446 -12.52197 -12.44674 -12.20839 -12.18389 -11.93584 -11.84502 -11.70988 -11.53916 -11.27934 -11.09160 -10.90220 -10.73262 -10.56931 -10.12106 -8.96915 -8.26621 -6.19817 1.32558 1.38866 1.49924 2.38459 3.05774 3.20810 3.50129 3.91684 4.00552 4.20386 4.27887 4.34426 4.41896 4.49233 4.52193 4.56493 4.67340 4.78574 4.83735 4.90132 4.96103 5.00447 5.01893 5.11119 5.12908 5.15666 5.24388 5.29856 5.37567 5.40853 5.45573 5.51656 5.58262 5.67202 5.71235 5.74525 5.80611 6.28799 6.32350 6.50799 6.76862 7.37519 8.87254 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.010792 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.449730 B = 2594.010981 C = 2946.766734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.131 4.131 4 C 0.063 3.937 5 H 0.061 0.939 6 C -0.114 4.114 7 C -0.119 4.119 8 C 0.010 3.990 9 N -0.492 5.492 10 C 0.082 3.918 11 C -0.046 4.046 12 C -0.454 4.454 13 H 0.036 0.964 14 C 0.031 3.969 15 N -0.942 5.942 16 Si 0.908 3.092 17 H -0.282 1.282 18 H -0.302 1.302 19 H -0.218 1.218 20 C -0.160 4.160 21 C -0.188 4.188 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 10.763 -7.883 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.045 4.045 5 H 0.079 0.921 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.118 4.118 9 N -0.214 5.214 10 C -0.047 4.047 11 C -0.048 4.048 12 C -0.492 4.492 13 H 0.054 0.946 14 C -0.167 4.167 15 N -0.582 5.582 16 Si 0.733 3.267 17 H -0.208 1.208 18 H -0.230 1.230 19 H -0.140 1.140 20 C -0.197 4.197 21 C -0.227 4.227 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.839 11.159 -7.950 13.993 hybrid contribution 0.690 -1.698 0.760 1.984 sum -2.149 9.462 -7.190 12.077 Atomic orbital electron populations 1.21789 0.94554 1.01323 1.02212 1.20928 0.95504 0.96708 0.96339 1.21709 1.01209 0.94825 1.01078 1.22957 0.87756 0.98831 0.94940 0.92089 1.22560 0.97390 1.00885 0.94303 1.22179 0.96049 0.99523 0.97926 1.23141 0.97374 1.02242 0.89009 1.65047 1.08333 1.41896 1.06124 1.21858 0.96427 0.89287 0.97176 1.19984 0.99448 0.94938 0.90448 1.20162 1.03836 1.28669 0.96497 0.94560 1.25539 1.01555 0.94439 0.95187 1.70061 1.34840 1.31633 1.21652 0.86370 0.80980 0.76308 0.83009 1.20826 1.22950 1.13983 1.22886 0.91823 1.02458 1.02492 1.22980 1.01351 0.96638 1.01691 0.92397 0.91372 0.93755 0.92206 0.92969 0.92524 0.92630 0.92020 0.89453 0.94478 0.90855 0.91417 0.92665 0.93813 0.90913 0.92968 0.91242 0.88177 0.88890 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.01 71.98 0.65 -2.70 16 2 C -0.08 -2.09 2.61 -10.80 -0.03 -2.12 16 3 C -0.13 -3.21 8.72 71.98 0.63 -2.58 16 4 C 0.06 2.17 1.31 45.26 0.06 2.22 16 5 H 0.06 2.50 3.90 -2.39 -0.01 2.49 16 6 C -0.11 -3.63 5.42 31.80 0.17 -3.46 16 7 C -0.12 -4.35 6.93 31.47 0.22 -4.14 16 8 C 0.01 0.42 5.98 86.44 0.52 0.94 16 9 N -0.49 -18.38 4.47 -858.26 -3.83 -22.21 16 10 C 0.08 3.19 5.25 86.30 0.45 3.64 16 11 C -0.05 -1.97 0.05 -52.93 0.00 -1.97 16 12 C -0.45 -23.80 5.59 25.60 0.14 -23.65 16 13 H 0.04 2.17 7.54 -2.91 -0.02 2.15 16 14 C 0.03 1.70 4.69 84.66 0.40 2.10 16 15 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 16 Si 0.91 42.97 25.44 68.60 1.74 44.71 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 19 H -0.22 -9.26 5.41 99.48 0.54 -8.72 16 20 C -0.16 -5.99 7.86 30.62 0.24 -5.75 16 21 C -0.19 -7.47 7.27 30.62 0.22 -7.25 16 22 H 0.06 1.31 7.31 -2.39 -0.02 1.29 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.71 6.48 -2.39 -0.02 1.69 16 26 H 0.05 1.42 7.66 -2.38 -0.02 1.40 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.31 5.96 -2.39 -0.01 1.29 16 29 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 30 H 0.09 2.43 5.70 -2.39 -0.01 2.42 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.07 3.35 4.24 -2.39 -0.01 3.34 16 34 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.04 1.81 6.07 -2.39 -0.01 1.80 16 36 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.10 3.23 6.39 -2.39 -0.02 3.21 16 40 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.07 2.83 8.01 -2.39 -0.02 2.81 16 Total: -1.00 -58.77 293.00 2.70 -56.07 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.82 Total: 22.84 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.67 Total: -44.71 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.54 Total: -78.91 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.74 Total: 44.71 kcal Total: -58.77 2.70 -56.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.761 kcal (2) G-P(sol) polarization free energy of solvation -58.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds