Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.90291 * 305.69782 * 4 2 1 6 6 C 1.53993 * 109.91552 * 66.79636 * 4 2 1 7 7 C 1.54601 * 105.13715 * 120.58267 * 6 4 2 8 8 C 1.54944 * 102.92059 * 21.95579 * 7 6 4 9 9 N 1.47897 * 109.91699 * 184.59458 * 4 2 1 10 10 C 1.46902 * 110.99627 * 94.80357 * 9 4 2 11 11 C 1.53001 * 109.46748 * 169.99882 * 10 9 4 12 12 C 1.50699 * 115.55435 * 34.32743 * 11 10 9 13 13 H 1.08003 * 119.99586 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00158 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00156 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99750 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47626 * 59.99753 * 16 14 12 18 18 H 1.48511 * 109.47017 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46812 * 299.99341 * 16 14 12 20 20 C 1.53006 * 117.49911 * 248.62026 * 11 10 9 21 21 C 1.53005 * 117.49813 * 179.97438 * 11 10 9 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.08999 * 110.30954 * 239.49472 * 6 4 2 30 30 H 1.08998 * 110.31161 * 1.66598 * 6 4 2 31 31 H 1.08997 * 110.72737 * 140.31357 * 7 6 4 32 32 H 1.08999 * 110.72490 * 263.60076 * 7 6 4 33 33 H 1.08994 * 110.66519 * 81.02410 * 8 7 6 34 34 H 1.09003 * 110.66647 * 203.98747 * 8 7 6 35 35 H 1.09001 * 109.47160 * 289.99269 * 10 9 4 36 36 H 1.08995 * 109.47429 * 49.99936 * 10 9 4 37 37 H 0.97001 * 119.99666 * 180.02562 * 15 14 12 38 38 H 1.08996 * 117.49596 * 359.97438 * 20 11 10 39 39 H 1.08998 * 117.49958 * 145.02630 * 20 11 10 40 40 H 1.08996 * 117.50068 * 214.98051 * 21 11 10 41 41 H 1.09002 * 117.49819 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5999 -1.7166 -1.3088 6 6 1.6771 0.0890 -2.5076 7 6 3.0293 0.4112 -3.1842 8 6 3.9706 -0.6794 -2.6140 9 7 3.5148 -0.8241 -1.2048 10 6 3.9356 -2.1135 -0.6405 11 6 5.4427 -2.2889 -0.8379 12 6 6.2606 -1.0260 -0.7540 13 1 5.7751 -0.0798 -0.5658 14 6 7.6285 -1.0783 -0.9186 15 7 8.2196 -2.2304 -1.1483 16 14 8.6423 0.4871 -0.8139 17 1 8.4655 1.1028 0.5257 18 1 10.0764 0.1631 -1.0239 19 1 8.1913 1.4398 -1.8600 20 6 5.9059 -3.3671 -1.8197 21 6 6.0785 -3.5781 -0.3136 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.0530 -0.5065 -3.1740 30 1 1.1641 1.0097 -2.2298 31 1 2.9491 0.3234 -4.2677 32 1 3.3750 1.4054 -2.9013 33 1 3.8446 -1.6174 -3.1546 34 1 5.0091 -0.3504 -2.6538 35 1 3.7034 -2.1373 0.4242 36 1 3.4066 -2.9214 -1.1460 37 1 9.1820 -2.2672 -1.2638 38 1 5.1370 -3.9517 -2.3246 39 1 6.8023 -3.1631 -2.4052 40 1 7.0884 -3.5127 0.0912 41 1 5.4230 -4.3014 0.1715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088836920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = 27.018787 kcal Electronic energy + Delta-G solvation = -18238.394616 eV Core-core repulsion = 15732.915464 eV Total energy + Delta-G solvation = -2505.479152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13681 -36.43676 -34.01178 -31.78574 -30.75075 -27.42812 -26.83670 -25.70405 -24.69456 -21.88969 -20.82485 -20.39209 -18.79196 -18.26290 -16.09083 -15.83795 -14.92488 -14.60734 -13.97214 -13.80945 -13.33869 -13.10351 -12.85317 -12.44690 -12.31742 -11.77926 -11.66614 -11.27195 -11.05039 -10.98096 -10.84998 -10.69427 -10.58093 -10.49744 -10.39936 -10.09041 -9.95303 -9.93435 -9.82983 -9.26750 -8.67142 -8.28438 -7.95641 -7.47492 -5.85440 -3.87057 3.36283 3.41024 3.44520 4.47959 4.64531 5.02359 5.11465 5.18217 5.39865 5.44977 5.47522 5.56130 5.84387 5.90583 5.91289 5.95951 5.98972 6.09343 6.17273 6.20532 6.29421 6.32657 6.38351 6.42889 6.57203 6.63639 6.71827 6.73895 6.79194 6.85072 7.06176 7.13204 7.26852 7.37014 7.72739 7.81851 8.01484 8.16951 8.28993 8.66933 9.12928 9.66329 11.11195 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.008288 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.671021 B = 3377.485163 C = 3726.526389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.139 4.139 4 C 0.065 3.935 5 H 0.039 0.961 6 C -0.127 4.127 7 C -0.127 4.127 8 C 0.048 3.952 9 N -0.488 5.488 10 C 0.096 3.904 11 C 0.022 3.978 12 C -0.451 4.451 13 H 0.075 0.925 14 C 0.051 3.949 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.192 4.192 21 C -0.190 4.190 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.009 0.991 37 H 0.256 0.744 38 H 0.035 0.965 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 4.008 -1.247 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.196 4.196 4 C -0.044 4.044 5 H 0.057 0.943 6 C -0.165 4.165 7 C -0.166 4.166 8 C -0.079 4.079 9 N -0.211 5.211 10 C -0.032 4.032 11 C 0.021 3.979 12 C -0.488 4.488 13 H 0.093 0.907 14 C -0.149 4.149 15 N -0.525 5.525 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.230 4.230 21 C -0.228 4.228 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.423 4.339 -0.937 12.256 hybrid contribution 0.263 -0.204 -0.436 0.549 sum -11.161 4.135 -1.373 11.981 Atomic orbital electron populations 1.21873 0.96206 1.01079 1.01244 1.20978 0.93747 0.97095 0.97982 1.21774 1.03034 0.94942 0.99849 1.22431 0.90611 0.96936 0.94407 0.94301 1.22517 0.97756 1.00043 0.96213 1.22541 0.95112 1.00261 0.98644 1.23233 1.01134 0.96024 0.87514 1.64615 1.05594 1.32520 1.18390 1.21755 0.96071 0.87507 0.97889 1.18996 0.88858 0.89960 1.00068 1.20643 0.90227 0.92684 1.45277 0.90702 1.25060 0.98082 0.95947 0.95804 1.70021 1.09554 1.23582 1.49373 0.86635 0.78882 0.83721 0.78572 1.20413 1.21704 1.20356 1.22889 1.02494 1.04657 0.92945 1.22810 1.02824 1.00577 0.96615 0.93048 0.92893 0.93307 0.91375 0.93271 0.94195 0.90811 0.92692 0.90990 0.92195 0.91246 0.95071 0.87630 0.92336 0.97251 0.93368 0.94658 0.87332 0.87202 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.02 37.16 0.33 -1.36 16 2 C -0.08 -1.13 2.89 -90.62 -0.26 -1.39 16 3 C -0.14 -1.96 8.72 37.16 0.32 -1.64 16 4 C 0.07 1.03 2.23 -66.64 -0.15 0.88 16 5 H 0.04 0.64 7.57 -51.93 -0.39 0.24 16 6 C -0.13 -1.78 5.50 -25.37 -0.14 -1.92 16 7 C -0.13 -1.95 7.07 -24.86 -0.18 -2.13 16 8 C 0.05 0.92 5.38 -1.74 -0.01 0.91 16 9 N -0.49 -9.37 3.59 -222.33 -0.80 -10.17 16 10 C 0.10 2.03 5.16 -3.82 -0.02 2.01 16 11 C 0.02 0.54 1.68 -155.65 -0.26 0.27 16 12 C -0.45 -11.92 6.87 -34.44 -0.24 -12.16 16 13 H 0.07 2.00 7.09 -52.48 -0.37 1.62 16 14 C 0.05 1.37 5.27 -17.82 -0.09 1.28 16 15 N -0.89 -24.65 8.59 55.43 0.48 -24.17 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.19 -4.80 9.31 -26.70 -0.25 -5.05 16 21 C -0.19 -4.79 9.38 -26.70 -0.25 -5.04 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.57 6.96 -51.93 -0.36 0.21 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.64 6.05 -51.93 -0.31 0.33 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.92 5.00 -51.93 -0.26 0.66 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.61 8.02 -51.93 -0.42 0.20 16 34 H 0.11 2.33 6.34 -51.93 -0.33 2.00 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.11 2.99 6.28 -51.93 -0.33 2.66 16 40 H 0.11 3.05 6.28 -51.93 -0.33 2.72 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -26.75 306.06 -9.17 -35.92 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.25 Total: 2.95 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -1.19 Total: -25.31 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.32 Total: -34.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.75 -9.17 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.934 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds