Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.90291 * 305.69782 * 4 2 1 6 6 C 1.53993 * 109.91552 * 66.79636 * 4 2 1 7 7 C 1.54601 * 105.13715 * 120.58267 * 6 4 2 8 8 C 1.54944 * 102.92059 * 21.95579 * 7 6 4 9 9 N 1.47897 * 109.91699 * 184.59458 * 4 2 1 10 10 C 1.46902 * 110.99627 * 94.80357 * 9 4 2 11 11 C 1.53001 * 109.46748 * 169.99882 * 10 9 4 12 12 C 1.50699 * 115.55435 * 34.32743 * 11 10 9 13 13 H 1.08003 * 119.99586 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00158 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00156 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99750 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47626 * 59.99753 * 16 14 12 18 18 H 1.48511 * 109.47017 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46812 * 299.99341 * 16 14 12 20 20 C 1.53006 * 117.49911 * 248.62026 * 11 10 9 21 21 C 1.53005 * 117.49813 * 179.97438 * 11 10 9 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.08999 * 110.30954 * 239.49472 * 6 4 2 30 30 H 1.08998 * 110.31161 * 1.66598 * 6 4 2 31 31 H 1.08997 * 110.72737 * 140.31357 * 7 6 4 32 32 H 1.08999 * 110.72490 * 263.60076 * 7 6 4 33 33 H 1.08994 * 110.66519 * 81.02410 * 8 7 6 34 34 H 1.09003 * 110.66647 * 203.98747 * 8 7 6 35 35 H 1.09001 * 109.47160 * 289.99269 * 10 9 4 36 36 H 1.08995 * 109.47429 * 49.99936 * 10 9 4 37 37 H 0.97001 * 119.99666 * 180.02562 * 15 14 12 38 38 H 1.08996 * 117.49596 * 359.97438 * 20 11 10 39 39 H 1.08998 * 117.49958 * 145.02630 * 20 11 10 40 40 H 1.08996 * 117.50068 * 214.98051 * 21 11 10 41 41 H 1.09002 * 117.49819 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5999 -1.7166 -1.3088 6 6 1.6771 0.0890 -2.5076 7 6 3.0293 0.4112 -3.1842 8 6 3.9706 -0.6794 -2.6140 9 7 3.5148 -0.8241 -1.2048 10 6 3.9356 -2.1135 -0.6405 11 6 5.4427 -2.2889 -0.8379 12 6 6.2606 -1.0260 -0.7540 13 1 5.7751 -0.0798 -0.5658 14 6 7.6285 -1.0783 -0.9186 15 7 8.2196 -2.2304 -1.1483 16 14 8.6423 0.4871 -0.8139 17 1 8.4655 1.1028 0.5257 18 1 10.0764 0.1631 -1.0239 19 1 8.1913 1.4398 -1.8600 20 6 5.9059 -3.3671 -1.8197 21 6 6.0785 -3.5781 -0.3136 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.0530 -0.5065 -3.1740 30 1 1.1641 1.0097 -2.2298 31 1 2.9491 0.3234 -4.2677 32 1 3.3750 1.4054 -2.9013 33 1 3.8446 -1.6174 -3.1546 34 1 5.0091 -0.3504 -2.6538 35 1 3.7034 -2.1373 0.4242 36 1 3.4066 -2.9214 -1.1460 37 1 9.1820 -2.2672 -1.2638 38 1 5.1370 -3.9517 -2.3246 39 1 6.8023 -3.1631 -2.4052 40 1 7.0884 -3.5127 0.0912 41 1 5.4230 -4.3014 0.1715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088836920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = 14.087099 kcal Electronic energy + Delta-G solvation = -18238.955376 eV Core-core repulsion = 15732.915464 eV Total energy + Delta-G solvation = -2506.039912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53713 -38.26308 -35.28818 -33.69658 -32.34377 -28.77015 -27.85433 -27.61476 -26.39678 -23.09110 -22.71950 -22.02173 -20.63609 -19.52123 -17.99278 -17.21097 -16.69066 -16.22446 -15.43582 -15.19636 -14.99536 -14.65350 -14.26656 -13.86842 -13.55590 -13.31626 -12.92940 -12.80268 -12.75443 -12.54715 -12.46340 -12.20756 -12.17308 -11.95261 -11.88668 -11.73215 -11.64999 -11.26159 -11.13003 -11.03653 -10.67088 -10.27585 -9.98756 -8.99625 -7.93104 -5.99631 1.44927 1.45596 1.52986 2.48259 3.07897 3.27562 3.79712 3.90847 3.96042 4.16776 4.30387 4.35138 4.44666 4.46609 4.58571 4.66791 4.75278 4.78745 4.84751 4.86497 4.92647 4.98155 5.10485 5.13647 5.16278 5.21795 5.27630 5.29856 5.36975 5.43560 5.46013 5.51416 5.63075 5.67293 5.72043 6.00033 6.19692 6.29813 6.46666 6.65228 7.03620 7.55729 9.01652 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.008288 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.671021 B = 3377.485163 C = 3726.526389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.134 4.134 4 C 0.062 3.938 5 H 0.037 0.963 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.048 3.952 9 N -0.500 5.500 10 C 0.105 3.895 11 C 0.018 3.982 12 C -0.456 4.456 13 H 0.068 0.932 14 C 0.005 3.995 15 N -0.908 5.908 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.272 1.272 20 C -0.187 4.187 21 C -0.194 4.194 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.253 0.747 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 5.234 -1.534 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.047 4.047 5 H 0.055 0.945 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.079 4.079 9 N -0.223 5.223 10 C -0.023 4.023 11 C 0.018 3.982 12 C -0.494 4.494 13 H 0.087 0.913 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.197 1.197 20 C -0.225 4.225 21 C -0.233 4.233 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.670 5.572 -1.223 14.813 hybrid contribution 0.965 -0.608 -0.337 1.189 sum -12.706 4.965 -1.560 13.730 Atomic orbital electron populations 1.21805 0.93597 1.01753 1.02510 1.20977 0.95828 0.96624 0.96313 1.21714 1.00916 0.95221 1.01259 1.22560 0.88135 0.97572 0.96383 0.94493 1.22501 0.97110 1.00817 0.95170 1.22491 0.94836 0.98618 0.99812 1.23085 1.00183 0.96808 0.87863 1.64568 1.08263 1.31066 1.18402 1.21567 0.93726 0.88942 0.98081 1.19141 0.90822 0.89044 0.99211 1.20799 0.90595 0.93168 1.44808 0.91340 1.25715 0.99165 0.98465 0.95883 1.70175 1.09394 1.25065 1.50188 0.85724 0.77302 0.80673 0.78531 1.20227 1.21782 1.19741 1.22709 1.01865 1.05399 0.92571 1.22714 1.01936 1.01857 0.96764 0.91877 0.91542 0.92979 0.93301 0.91843 0.92819 0.93992 0.90961 0.89057 0.90241 0.91314 0.96149 0.91305 0.92460 0.96805 0.93768 0.92931 0.90078 0.89948 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.02 71.98 0.65 -2.09 16 2 C -0.08 -2.07 2.89 -10.79 -0.03 -2.10 16 3 C -0.13 -3.50 8.72 71.98 0.63 -2.87 16 4 C 0.06 1.84 2.23 45.06 0.10 1.94 16 5 H 0.04 1.12 7.57 -2.39 -0.02 1.10 16 6 C -0.12 -2.90 5.50 31.47 0.17 -2.73 16 7 C -0.12 -3.40 7.07 31.80 0.22 -3.18 16 8 C 0.05 1.83 5.38 86.60 0.47 2.30 16 9 N -0.50 -18.93 3.59 -857.32 -3.08 -22.00 16 10 C 0.11 4.44 5.16 86.30 0.45 4.89 16 11 C 0.02 0.92 1.68 -52.92 -0.09 0.83 16 12 C -0.46 -24.58 6.87 25.60 0.18 -24.41 16 13 H 0.07 3.72 7.09 -2.91 -0.02 3.70 16 14 C 0.01 0.29 5.27 84.65 0.45 0.73 16 15 N -0.91 -51.89 8.59 21.45 0.18 -51.71 16 16 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 C -0.19 -9.52 9.31 30.61 0.29 -9.23 16 21 C -0.19 -9.93 9.38 30.61 0.29 -9.64 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.14 6.96 -2.39 -0.02 1.13 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.45 6.05 -2.39 -0.01 1.44 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.36 7.76 -2.39 -0.02 1.34 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.92 5.00 -2.39 -0.01 1.91 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 34 H 0.07 3.10 6.34 -2.39 -0.02 3.09 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 37 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.05 2.44 8.05 -2.39 -0.02 2.42 16 39 H 0.08 4.60 6.28 -2.39 -0.02 4.58 16 40 H 0.08 4.70 6.28 -2.39 -0.02 4.68 16 41 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -58.05 306.06 3.87 -54.18 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.97 Total: 18.84 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.76 Total: -45.55 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -2.89 Total: -73.71 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -58.05 3.87 -54.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.270 kcal (2) G-P(sol) polarization free energy of solvation -58.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds