Wall clock time and date at job start Sun Mar 29 2020 21:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.46857 * 2 1 4 4 C 1.46893 * 111.00212 * 287.98004 * 3 2 1 5 5 C 1.50703 * 109.46988 * 160.36184 * 4 3 2 6 6 H 1.07997 * 120.00099 * 4.67802 * 5 4 3 7 7 C 1.37879 * 120.00060 * 184.68258 * 5 4 3 8 8 N 1.31514 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00273 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47097 * 89.99558 * 9 7 5 11 11 H 1.48499 * 109.47427 * 209.99984 * 9 7 5 12 12 H 1.48500 * 109.46841 * 330.00079 * 9 7 5 13 13 C 1.46910 * 110.99649 * 164.02795 * 3 2 1 14 14 C 1.50691 * 109.47201 * 293.95363 * 13 3 2 15 15 C 1.35320 * 126.12666 * 95.29297 * 14 13 3 16 16 C 1.39874 * 107.92289 * 180.14486 * 15 14 13 17 17 C 1.50695 * 125.89748 * 179.86455 * 16 15 14 18 18 N 1.30835 * 108.19925 * 359.60359 * 16 15 14 19 19 N 1.34951 * 126.13081 * 275.00185 * 14 13 3 20 20 C 1.46495 * 126.03342 * 359.97438 * 19 14 13 21 21 H 1.08998 * 109.47053 * 299.36031 * 1 2 3 22 22 H 1.09006 * 109.47271 * 59.36516 * 1 2 3 23 23 H 1.08999 * 109.47178 * 179.36178 * 1 2 3 24 24 H 1.08997 * 109.47197 * 240.00333 * 2 1 3 25 25 H 1.08998 * 109.47323 * 119.99892 * 2 1 3 26 26 H 1.09000 * 109.47408 * 280.35857 * 4 3 2 27 27 H 1.08998 * 109.47028 * 40.36514 * 4 3 2 28 28 H 0.96998 * 120.00391 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46887 * 173.95493 * 13 3 2 30 30 H 1.09005 * 109.46856 * 53.95987 * 13 3 2 31 31 H 1.08006 * 126.04077 * 0.02830 * 15 14 13 32 32 H 1.09004 * 109.47205 * 269.71285 * 17 16 15 33 33 H 1.09001 * 109.46948 * 149.72014 * 17 16 15 34 34 H 1.08997 * 109.47245 * 29.72075 * 17 16 15 35 35 H 1.09003 * 109.47301 * 269.97051 * 20 19 14 36 36 H 1.08992 * 109.47437 * 29.97641 * 20 19 14 37 37 H 1.08995 * 109.47092 * 149.97949 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7959 2.0225 -1.3044 5 6 1.8472 3.5204 -1.1468 6 1 2.1024 3.9545 -0.1914 7 6 1.5682 4.3367 -2.2224 8 7 1.2578 3.8081 -3.3860 9 14 1.6310 6.1934 -2.0270 10 1 3.0014 6.6772 -2.3324 11 1 0.6640 6.8226 -2.9620 12 1 1.2777 6.5563 -0.6311 13 6 3.4382 1.4419 0.3774 14 6 3.5943 1.0064 1.8116 15 6 3.9047 -0.2399 2.2377 16 6 3.9480 -0.2185 3.6356 17 6 4.2546 -1.3934 4.5281 18 7 3.6818 0.9989 4.0341 19 7 3.4550 1.7907 2.9009 20 6 3.1253 3.2180 2.8987 21 1 -0.3633 0.5039 0.8956 22 1 -0.3634 0.5237 -0.8843 23 1 -0.3633 -1.0276 -0.0114 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5704 1.7039 -2.0021 27 1 0.8184 1.7308 -1.6885 28 1 1.0619 4.3823 -4.1428 29 1 3.8032 2.4629 0.2659 30 1 4.0129 0.7780 -0.2686 31 1 4.0851 -1.0997 1.6094 32 1 3.3281 -1.9084 4.7820 33 1 4.7360 -1.0407 5.4403 34 1 4.9216 -2.0807 4.0077 35 1 4.0442 3.8031 2.8603 36 1 2.5116 3.4479 2.0279 37 1 2.5750 3.4652 3.8065 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089184656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:35 Heat of formation + Delta-G solvation = 71.401407 kcal Electronic energy + Delta-G solvation = -17195.536125 eV Core-core repulsion = 14588.441205 eV Total energy + Delta-G solvation = -2607.094920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93042 -36.93975 -33.62292 -32.72106 -31.10953 -29.80277 -29.10432 -26.94959 -25.12566 -24.56350 -22.62488 -20.18866 -20.00435 -18.73175 -16.58057 -16.15836 -15.38674 -14.78841 -14.49272 -14.00540 -13.91635 -13.35993 -13.30399 -13.22090 -12.83497 -12.46080 -12.10121 -11.94219 -11.80791 -11.63198 -11.31705 -11.11463 -10.96088 -10.83751 -10.64856 -10.32815 -10.17369 -9.74297 -9.32621 -8.72987 -8.48444 -8.11444 -7.35825 -6.08657 -4.10725 2.23437 2.90678 3.07318 3.26442 3.33702 3.36000 4.36427 4.84566 4.87921 5.09367 5.27649 5.34348 5.46768 5.55495 5.68406 5.71651 5.74089 5.84122 5.92838 5.96140 6.06259 6.11794 6.17055 6.24526 6.35747 6.56326 6.61013 6.81497 7.01978 7.15222 7.26751 7.40342 7.73469 8.03035 8.10734 8.12184 8.45470 8.95193 9.53540 11.01756 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.006844 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.664768 B = 4089.928726 C = 4728.513350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.190 3.810 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.117 3.883 14 C 0.120 3.880 15 C -0.285 4.285 16 C 0.064 3.936 17 C -0.067 4.067 18 N -0.311 5.311 19 N -0.357 5.357 20 C 0.098 3.902 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.066 0.934 26 H -0.009 1.009 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -6.978 9.872 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.256 5.256 4 C 0.066 3.934 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.013 4.013 14 C -0.010 4.010 15 C -0.315 4.315 16 C -0.101 4.101 17 C -0.126 4.126 18 N -0.134 5.134 19 N -0.138 5.138 20 C -0.043 4.043 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.009 0.991 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.550 -5.716 11.028 12.919 hybrid contribution 0.495 0.163 -1.415 1.508 sum 4.045 -5.554 9.612 11.815 Atomic orbital electron populations 1.21715 0.95526 0.99957 1.02667 1.22081 0.95990 0.90552 0.99616 1.62158 1.13783 1.15091 1.34601 1.19826 0.96802 0.94174 0.82631 1.21105 1.46683 0.90584 0.96191 0.92163 1.24972 0.95365 0.98899 0.95221 1.69943 1.47314 1.35314 1.01041 0.86543 0.77781 0.85321 0.78041 1.20735 1.21233 1.19796 1.20616 0.91733 1.02134 0.86821 1.21268 0.97692 0.91018 0.90981 1.21028 1.18733 0.97498 0.94224 1.22157 1.00094 0.93792 0.94057 1.20094 1.01835 0.92999 0.97651 1.77194 1.25030 1.02824 1.08368 1.48314 1.53366 1.09064 1.03102 1.21949 1.01747 0.75350 1.05278 0.92695 0.92065 0.93616 0.95875 0.91570 0.99135 0.94143 0.92851 0.88876 0.93328 0.84287 0.90961 0.91417 0.90825 0.91353 0.87574 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.99 37.15 0.37 -2.08 16 2 C 0.05 0.84 5.55 -3.83 -0.02 0.82 16 3 N -0.53 -10.98 4.37 -237.52 -1.04 -12.02 16 4 C 0.19 4.70 4.59 -4.98 -0.02 4.68 16 5 C -0.51 -13.43 8.61 -34.44 -0.30 -13.73 16 6 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.12 2.18 4.72 -4.97 -0.02 2.16 16 14 C 0.12 2.11 5.72 -82.27 -0.47 1.64 16 15 C -0.28 -4.59 9.25 -40.01 -0.37 -4.97 16 16 C 0.06 1.01 7.22 -82.41 -0.59 0.41 16 17 C -0.07 -0.74 10.45 36.00 0.38 -0.37 16 18 N -0.31 -5.48 12.58 33.67 0.42 -5.06 16 19 N -0.36 -6.28 4.01 -63.89 -0.26 -6.53 16 20 C 0.10 1.48 11.16 59.84 0.67 2.15 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 25 H 0.07 1.15 5.84 -51.93 -0.30 0.84 16 26 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 27 H 0.04 1.08 6.24 -51.93 -0.32 0.75 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.09 1.82 7.16 -51.93 -0.37 1.45 16 30 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.75 7.45 -51.93 -0.39 1.37 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -29.97 305.88 -6.91 -36.88 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.88 Total: -0.78 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.48 Total: -7.83 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.13 Total: -48.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.97 -6.91 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.280 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds