Wall clock time and date at job start Sun Mar 29 2020 21:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.46857 * 2 1 4 4 C 1.46893 * 111.00212 * 287.98004 * 3 2 1 5 5 C 1.50703 * 109.46988 * 160.36184 * 4 3 2 6 6 H 1.07997 * 120.00099 * 4.67802 * 5 4 3 7 7 C 1.37879 * 120.00060 * 184.68258 * 5 4 3 8 8 N 1.31514 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00273 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47097 * 89.99558 * 9 7 5 11 11 H 1.48499 * 109.47427 * 209.99984 * 9 7 5 12 12 H 1.48500 * 109.46841 * 330.00079 * 9 7 5 13 13 C 1.46910 * 110.99649 * 164.02795 * 3 2 1 14 14 C 1.50691 * 109.47201 * 293.95363 * 13 3 2 15 15 C 1.35320 * 126.12666 * 95.29297 * 14 13 3 16 16 C 1.39874 * 107.92289 * 180.14486 * 15 14 13 17 17 C 1.50695 * 125.89748 * 179.86455 * 16 15 14 18 18 N 1.30835 * 108.19925 * 359.60359 * 16 15 14 19 19 N 1.34951 * 126.13081 * 275.00185 * 14 13 3 20 20 C 1.46495 * 126.03342 * 359.97438 * 19 14 13 21 21 H 1.08998 * 109.47053 * 299.36031 * 1 2 3 22 22 H 1.09006 * 109.47271 * 59.36516 * 1 2 3 23 23 H 1.08999 * 109.47178 * 179.36178 * 1 2 3 24 24 H 1.08997 * 109.47197 * 240.00333 * 2 1 3 25 25 H 1.08998 * 109.47323 * 119.99892 * 2 1 3 26 26 H 1.09000 * 109.47408 * 280.35857 * 4 3 2 27 27 H 1.08998 * 109.47028 * 40.36514 * 4 3 2 28 28 H 0.96998 * 120.00391 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46887 * 173.95493 * 13 3 2 30 30 H 1.09005 * 109.46856 * 53.95987 * 13 3 2 31 31 H 1.08006 * 126.04077 * 0.02830 * 15 14 13 32 32 H 1.09004 * 109.47205 * 269.71285 * 17 16 15 33 33 H 1.09001 * 109.46948 * 149.72014 * 17 16 15 34 34 H 1.08997 * 109.47245 * 29.72075 * 17 16 15 35 35 H 1.09003 * 109.47301 * 269.97051 * 20 19 14 36 36 H 1.08992 * 109.47437 * 29.97641 * 20 19 14 37 37 H 1.08995 * 109.47092 * 149.97949 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7959 2.0225 -1.3044 5 6 1.8472 3.5204 -1.1468 6 1 2.1024 3.9545 -0.1914 7 6 1.5682 4.3367 -2.2224 8 7 1.2578 3.8081 -3.3860 9 14 1.6310 6.1934 -2.0270 10 1 3.0014 6.6772 -2.3324 11 1 0.6640 6.8226 -2.9620 12 1 1.2777 6.5563 -0.6311 13 6 3.4382 1.4419 0.3774 14 6 3.5943 1.0064 1.8116 15 6 3.9047 -0.2399 2.2377 16 6 3.9480 -0.2185 3.6356 17 6 4.2546 -1.3934 4.5281 18 7 3.6818 0.9989 4.0341 19 7 3.4550 1.7907 2.9009 20 6 3.1253 3.2180 2.8987 21 1 -0.3633 0.5039 0.8956 22 1 -0.3634 0.5237 -0.8843 23 1 -0.3633 -1.0276 -0.0114 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5704 1.7039 -2.0021 27 1 0.8184 1.7308 -1.6885 28 1 1.0619 4.3823 -4.1428 29 1 3.8032 2.4629 0.2659 30 1 4.0129 0.7780 -0.2686 31 1 4.0851 -1.0997 1.6094 32 1 3.3281 -1.9084 4.7820 33 1 4.7360 -1.0407 5.4403 34 1 4.9216 -2.0807 4.0077 35 1 4.0442 3.8031 2.8603 36 1 2.5116 3.4479 2.0279 37 1 2.5750 3.4652 3.8065 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089184656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:34 Heat of formation + Delta-G solvation = 52.350430 kcal Electronic energy + Delta-G solvation = -17196.362237 eV Core-core repulsion = 14588.441205 eV Total energy + Delta-G solvation = -2607.921033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20859 -38.57962 -34.86730 -34.71033 -32.50544 -31.32785 -30.23032 -28.74455 -26.43109 -26.03136 -24.42202 -21.80787 -21.27235 -20.03874 -18.58717 -17.50628 -16.93256 -16.47724 -15.97224 -15.55053 -15.52005 -14.68334 -14.64698 -14.28481 -14.21527 -13.92824 -13.47765 -13.38003 -13.10847 -12.94629 -12.83804 -12.74161 -12.57978 -12.55400 -12.25031 -12.08597 -11.52851 -11.44115 -11.27546 -10.57754 -10.01697 -9.39219 -9.05443 -8.17276 -6.26619 0.91995 1.42808 1.43931 1.54360 1.68175 1.84912 2.41762 3.14570 3.33631 3.70140 3.71303 4.10871 4.23850 4.34091 4.41047 4.45427 4.58322 4.64150 4.70791 4.73221 4.75993 4.88791 4.90446 5.01060 5.03190 5.11852 5.22498 5.28617 5.33483 5.39832 5.69026 5.87014 6.07502 6.12468 6.33243 6.58635 6.85801 6.87841 7.42560 8.93256 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.006844 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.664768 B = 4089.928726 C = 4728.513350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.124 3.876 14 C 0.103 3.897 15 C -0.283 4.283 16 C 0.064 3.936 17 C -0.065 4.065 18 N -0.333 5.333 19 N -0.369 5.369 20 C 0.097 3.903 21 H 0.049 0.951 22 H 0.036 0.964 23 H 0.077 0.923 24 H 0.024 0.976 25 H 0.082 0.918 26 H -0.035 1.035 27 H 0.016 0.984 28 H 0.263 0.737 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -7.528 11.424 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.005 4.005 14 C -0.026 4.026 15 C -0.313 4.313 16 C -0.102 4.102 17 C -0.124 4.124 18 N -0.157 5.157 19 N -0.151 5.151 20 C -0.043 4.043 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.042 0.958 25 H 0.100 0.900 26 H -0.017 1.017 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.176 0.824 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.087 -6.274 12.603 14.659 hybrid contribution 0.349 0.244 -1.859 1.907 sum 4.437 -6.030 10.744 13.095 Atomic orbital electron populations 1.21670 0.94895 1.01582 1.01108 1.22159 0.96514 0.89188 1.00308 1.62075 1.15420 1.16650 1.31934 1.19465 0.94554 0.93932 0.84003 1.21443 1.46061 0.91640 0.96354 0.91718 1.25829 0.94986 1.03697 0.94847 1.70073 1.48500 1.37031 1.01883 0.85480 0.77907 0.79514 0.78327 1.19963 1.21248 1.18692 1.20461 0.90429 1.01530 0.88083 1.21141 0.99267 0.91969 0.90255 1.21332 1.17669 0.97392 0.94900 1.22878 0.98503 0.94275 0.94510 1.20268 1.03098 0.91669 0.97356 1.77180 1.26069 1.03813 1.08661 1.48526 1.53741 1.09722 1.03091 1.21994 1.02436 0.74900 1.05016 0.93233 0.94518 0.90407 0.95787 0.89968 1.01687 0.96550 0.92819 0.90354 0.92757 0.82382 0.89563 0.90706 0.88580 0.89768 0.89477 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.99 71.98 0.72 -3.89 16 2 C 0.05 1.65 5.55 86.30 0.48 2.13 16 3 N -0.54 -22.32 4.37 -905.37 -3.96 -26.27 16 4 C 0.21 10.50 4.59 85.56 0.39 10.89 16 5 C -0.52 -27.81 8.61 25.60 0.22 -27.59 16 6 H 0.06 3.35 7.33 -2.91 -0.02 3.33 16 7 C 0.00 0.24 5.46 84.66 0.46 0.71 16 8 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 9 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.12 4.65 4.72 85.55 0.40 5.05 16 14 C 0.10 3.51 5.72 41.40 0.24 3.75 16 15 C -0.28 -8.50 9.25 21.99 0.20 -8.30 16 16 C 0.06 1.84 7.22 43.10 0.31 2.15 16 17 C -0.07 -1.23 10.45 71.23 0.74 -0.48 16 18 N -0.33 -11.21 12.58 -47.39 -0.60 -11.80 16 19 N -0.37 -12.60 4.01 -356.06 -1.43 -14.03 16 20 C 0.10 2.88 11.16 127.77 1.43 4.30 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.04 1.42 6.52 -2.38 -0.02 1.40 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.02 0.86 8.05 -2.39 -0.02 0.84 16 25 H 0.08 2.69 5.84 -2.39 -0.01 2.68 16 26 H -0.03 -1.90 8.00 -2.39 -0.02 -1.92 16 27 H 0.02 0.91 6.24 -2.39 -0.01 0.90 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.08 3.12 7.16 -2.39 -0.02 3.10 16 30 H 0.05 1.95 8.12 -2.38 -0.02 1.93 16 31 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.89 7.45 -2.39 -0.02 2.87 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -64.10 305.88 2.96 -61.14 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.03 Total: 11.92 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.60 Total: -11.28 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -5.70 Total: -106.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.10 2.96 -61.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089184656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.495 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds