Wall clock time and date at job start Sun Mar 29 2020 21:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.48606 * 110.99783 * 52.06001 * 12 11 10 14 14 C 1.55527 * 102.82303 * 158.46806 * 13 12 11 15 15 C 1.54045 * 101.13843 * 319.98663 * 14 13 12 16 16 H 1.08998 * 104.06850 * 277.10335 * 15 14 13 17 17 C 1.49248 * 113.47725 * 162.66196 * 15 14 13 18 18 C 1.52552 * 113.37638 * 261.31212 * 17 15 14 19 19 C 1.53513 * 107.39728 * 305.95966 * 18 17 15 20 20 C 1.51298 * 107.21161 * 69.54546 * 19 18 17 21 21 C 1.49189 * 111.00176 * 170.00259 * 12 11 10 22 22 H 1.09005 * 108.94640 * 336.85736 * 21 12 11 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 27 27 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 28 28 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 29 29 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 30 30 H 1.08992 * 110.74507 * 276.80499 * 13 12 11 31 31 H 1.08997 * 110.73885 * 40.14197 * 13 12 11 32 32 H 1.09004 * 111.08634 * 202.01685 * 14 13 12 33 33 H 1.08997 * 111.12233 * 77.97019 * 14 13 12 34 34 H 1.09005 * 108.70230 * 22.31771 * 17 15 14 35 35 H 1.09002 * 108.70622 * 140.43101 * 17 15 14 36 36 H 1.08996 * 109.87167 * 65.42926 * 18 17 15 37 37 H 1.08993 * 109.87133 * 186.48725 * 18 17 15 38 38 H 1.08999 * 109.77995 * 188.89582 * 19 18 17 39 39 H 1.09003 * 109.78126 * 309.65129 * 19 18 17 40 40 H 1.09002 * 107.87404 * 179.76675 * 20 19 18 41 41 H 1.08997 * 109.15385 * 61.86909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 7 2.4351 -6.1035 0.0212 13 6 3.4289 -5.9491 1.1153 14 6 3.9457 -7.4017 1.3197 15 6 2.6394 -8.2053 1.1762 16 1 2.1823 -8.1465 2.1640 17 6 2.8606 -9.6586 0.9184 18 6 2.7420 -10.0370 -0.5547 19 6 1.3792 -9.5327 -1.0498 20 6 1.4460 -8.0216 -1.0828 21 6 1.7399 -7.4002 0.2683 22 1 0.7987 -7.2048 0.7823 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.8721 -3.6081 -0.8798 27 1 2.8721 -3.6002 0.9002 28 1 0.8536 -5.0411 0.9058 29 1 0.8541 -5.0485 -0.8741 30 1 4.2410 -5.2899 0.8090 31 1 2.9504 -5.5786 2.0218 32 1 4.3772 -7.5284 2.3126 33 1 4.6621 -7.6763 0.5455 34 1 3.8567 -9.9282 1.2694 35 1 2.1249 -10.2300 1.4845 36 1 3.5414 -9.5634 -1.1244 37 1 2.7986 -11.1198 -0.6648 38 1 1.1850 -9.9175 -2.0509 39 1 0.5942 -9.8628 -0.3692 40 1 0.4838 -7.6518 -1.4373 41 1 2.2190 -7.7131 -1.7866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102400220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:57 Heat of formation + Delta-G solvation = -26.245433 kcal Electronic energy + Delta-G solvation = -17266.226798 eV Core-core repulsion = 14758.437937 eV Total energy + Delta-G solvation = -2507.788861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07407 -36.16869 -33.91913 -32.72579 -31.36369 -29.00739 -28.49247 -25.82241 -23.01611 -22.65894 -21.97562 -21.01953 -19.68927 -18.20250 -16.45157 -16.03703 -15.29612 -14.79982 -14.42720 -14.36359 -14.24204 -13.73832 -13.38540 -12.62839 -12.54595 -12.26297 -12.10862 -11.69081 -11.53967 -11.45197 -11.26043 -11.01274 -10.84838 -10.78233 -10.53056 -10.38423 -10.31894 -10.00343 -9.96286 -9.62456 -9.28947 -9.00198 -8.32084 -8.08092 -5.97122 -3.99087 3.32859 3.40130 3.44759 4.16170 4.48284 4.51851 4.60479 4.74279 5.00111 5.11966 5.19037 5.33268 5.37645 5.38737 5.48831 5.52363 5.65744 5.78328 5.79472 5.84096 5.88985 5.95262 6.00014 6.09428 6.13009 6.15808 6.23591 6.31744 6.34802 6.37128 6.52412 6.73673 6.84872 7.10874 7.30067 7.46511 7.71607 7.86607 8.03522 8.46994 9.08338 9.64857 11.14426 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051877 B = 0.004374 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.606371 B = 6399.914824 C = 6707.050361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C 0.048 3.952 12 N -0.516 5.516 13 C 0.035 3.965 14 C -0.119 4.119 15 C -0.091 4.091 16 H 0.049 0.951 17 C -0.099 4.099 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.105 4.105 21 C 0.081 3.919 22 H 0.046 0.954 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -19.802 1.260 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.080 4.080 12 N -0.240 5.240 13 C -0.093 4.093 14 C -0.157 4.157 15 C -0.110 4.110 16 H 0.068 0.932 17 C -0.137 4.137 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.027 4.027 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.979 -19.649 0.774 20.285 hybrid contribution -0.166 1.148 0.910 1.474 sum 4.813 -18.501 1.684 19.191 Atomic orbital electron populations 1.69977 1.06064 1.26414 1.51181 1.25028 0.94837 0.99249 0.95414 0.86548 0.80152 0.83841 0.77544 1.19727 1.21007 1.21065 1.21292 0.93064 0.91051 1.50130 0.92658 1.19079 0.94032 0.91428 0.97071 1.21699 0.99216 0.92954 1.00702 1.22467 0.94214 0.91191 1.00133 1.65263 1.14402 1.01452 1.42909 1.23271 0.96259 0.96419 0.93356 1.22687 0.96874 0.94925 1.01252 1.20420 0.96663 0.94819 0.99071 0.93218 1.20565 1.01550 0.94531 0.97033 1.21560 0.97967 0.99905 0.96114 1.21327 0.97203 0.96023 1.00879 1.20887 1.02012 0.94332 0.97106 1.21550 0.95452 0.90532 0.95191 0.93576 0.93114 0.96888 0.96586 0.92645 0.93443 0.95411 0.91158 0.89817 0.93737 0.91364 0.90883 0.92012 0.92541 0.91541 0.92287 0.91934 0.92207 0.92805 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.32 4.81 -26.73 -0.13 -2.45 16 11 C 0.05 0.88 5.01 -3.82 -0.02 0.86 16 12 N -0.52 -8.18 4.78 -223.69 -1.07 -9.25 16 13 C 0.03 0.51 5.10 -1.54 -0.01 0.50 16 14 C -0.12 -1.39 6.41 -24.84 -0.16 -1.55 16 15 C -0.09 -1.04 2.45 -92.90 -0.23 -1.27 16 16 H 0.05 0.58 8.01 -51.93 -0.42 0.16 16 17 C -0.10 -0.93 5.40 -28.81 -0.16 -1.09 16 18 C -0.12 -1.08 6.06 -26.69 -0.16 -1.24 16 19 C -0.12 -1.14 5.99 -27.32 -0.16 -1.31 16 20 C -0.11 -1.29 5.29 -28.30 -0.15 -1.44 16 21 C 0.08 1.09 2.77 -68.13 -0.19 0.90 16 22 H 0.05 0.66 7.49 -51.93 -0.39 0.27 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 28 H 0.03 0.52 7.81 -51.93 -0.41 0.11 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.26 7.75 -51.93 -0.40 0.85 16 31 H 0.04 0.68 7.94 -51.93 -0.41 0.26 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.53 7.81 -51.93 -0.41 0.13 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -30.09 312.92 -10.35 -40.44 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -7.80 Total: -4.73 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.91 Total: -21.45 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.33 Total: -35.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.09 -10.35 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.199 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds