Wall clock time and date at job start Sun Mar 29 2020 21:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47244 * 264.78378 * 3 2 1 5 5 H 1.48497 * 109.47183 * 24.78885 * 3 2 1 6 6 H 1.48504 * 109.46799 * 144.78669 * 3 2 1 7 7 C 1.37879 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99849 * 5.50931 * 7 2 1 9 9 C 1.50695 * 119.99970 * 185.50989 * 7 2 1 10 10 H 1.09004 * 109.50687 * 335.11933 * 9 7 2 11 11 C 1.53117 * 109.50513 * 95.19983 * 9 7 2 12 12 C 1.53125 * 109.16036 * 177.59355 * 11 9 7 13 13 C 1.53027 * 109.27987 * 302.34653 * 12 11 9 14 14 N 1.46845 * 109.52690 * 59.17959 * 13 12 11 15 15 C 1.46902 * 111.00415 * 174.16103 * 14 13 12 16 16 C 1.53004 * 109.46862 * 66.04633 * 15 14 13 17 17 C 1.53002 * 109.46545 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47098 * 60.00185 * 17 16 15 19 19 C 1.52995 * 109.47256 * 299.99446 * 18 17 16 20 20 C 1.52999 * 109.46837 * 306.04783 * 15 14 13 21 21 C 1.46851 * 111.19480 * 298.26029 * 14 13 12 22 22 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52505 * 57.69407 * 11 9 7 24 24 H 1.08997 * 109.57315 * 297.53175 * 11 9 7 25 25 H 1.09000 * 109.50063 * 182.39866 * 12 11 9 26 26 H 1.09005 * 109.53272 * 62.30521 * 12 11 9 27 27 H 1.09006 * 109.46422 * 299.16363 * 13 12 11 28 28 H 1.09002 * 109.45403 * 179.19193 * 13 12 11 29 29 H 1.09004 * 109.46907 * 186.04521 * 15 14 13 30 30 H 1.09000 * 109.46807 * 299.99593 * 16 15 14 31 31 H 1.08993 * 109.47018 * 60.00013 * 16 15 14 32 32 H 1.09000 * 109.46833 * 179.97438 * 17 16 15 33 33 H 1.08991 * 109.47166 * 299.99551 * 17 16 15 34 34 H 1.09006 * 109.46997 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47339 * 60.00036 * 18 17 16 36 36 H 1.09004 * 109.47214 * 300.00707 * 19 18 17 37 37 H 1.08997 * 109.47481 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46937 * 299.99748 * 20 15 14 39 39 H 1.08991 * 109.47630 * 59.99879 * 20 15 14 40 40 H 1.09010 * 109.45955 * 181.75711 * 21 14 13 41 41 H 1.08995 * 109.46429 * 301.71959 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3960 2.6819 0.5870 6 1 3.4873 1.4743 0.8073 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1272 -0.0907 9 6 3.5062 -1.1972 0.1248 10 1 3.9031 -0.2460 -0.2301 11 6 3.8964 -1.3986 1.5916 12 6 5.4225 -1.4607 1.7018 13 6 5.9471 -2.5942 0.8177 14 7 5.5484 -2.3550 -0.5752 15 6 6.1511 -3.3489 -1.4735 16 6 5.5759 -4.7323 -1.1627 17 6 6.2041 -5.7675 -2.0980 18 6 7.7201 -5.7874 -1.8920 19 6 8.2952 -4.4041 -2.2028 20 6 7.6671 -3.3689 -1.2682 21 6 4.0865 -2.3384 -0.7136 22 1 -0.4850 0.8401 0.0004 23 1 3.4666 -2.3308 1.9583 24 1 3.5218 -0.5658 2.1868 25 1 5.7052 -1.6465 2.7379 26 1 5.8505 -0.5140 1.3719 27 1 5.5300 -3.5424 1.1571 28 1 7.0346 -2.6318 0.8828 29 1 5.9278 -3.0865 -2.5077 30 1 5.7992 -4.9945 -0.1286 31 1 4.4960 -4.7179 -1.3090 32 1 5.7948 -6.7531 -1.8763 33 1 5.9813 -5.5054 -3.1321 34 1 8.1676 -6.5252 -2.5580 35 1 7.9429 -6.0495 -0.8578 36 1 8.0723 -4.1419 -3.2371 37 1 9.3752 -4.4183 -2.0565 38 1 8.0768 -2.3834 -1.4896 39 1 7.8903 -3.6312 -0.2341 40 1 3.8226 -2.1904 -1.7609 41 1 3.6781 -3.2877 -0.3671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107468126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:52 Heat of formation + Delta-G solvation = -28.234694 kcal Electronic energy + Delta-G solvation = -17987.772872 eV Core-core repulsion = 15479.897750 eV Total energy + Delta-G solvation = -2507.875122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59186 -36.91661 -33.43523 -32.04308 -30.89322 -30.09169 -28.41972 -25.04069 -23.68717 -22.54624 -21.54520 -20.93996 -19.32765 -18.37634 -16.83842 -15.94684 -14.81498 -14.50512 -14.22831 -14.14129 -13.88094 -13.75852 -13.16985 -12.66139 -12.57791 -12.36518 -12.16722 -11.99310 -11.80930 -11.25021 -11.12901 -10.97372 -10.86999 -10.63395 -10.40176 -10.23940 -10.17645 -9.94026 -9.76443 -9.44236 -9.20037 -8.87090 -8.45494 -7.63040 -6.03960 -4.02760 3.34961 3.42293 3.47242 4.38408 4.47902 4.74250 4.82486 5.01434 5.22222 5.27632 5.29643 5.48090 5.50956 5.57076 5.64508 5.67811 5.70856 5.78406 5.93619 6.01505 6.03741 6.12882 6.15766 6.18144 6.26904 6.28902 6.37438 6.43192 6.47233 6.55496 6.63404 6.76593 6.89728 6.98023 7.37757 7.53660 7.66379 7.74952 7.94187 8.57593 9.01073 9.60372 11.09381 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006468 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.788752 B = 4328.229017 C = 4538.155075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.038 0.962 11 C -0.111 4.111 12 C -0.121 4.121 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.086 3.914 16 C -0.154 4.154 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.114 4.114 21 C 0.072 3.928 22 H 0.263 0.737 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 -8.383 -1.981 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.001 3.999 10 H 0.056 0.944 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.071 4.071 14 N -0.260 5.260 15 C -0.023 4.023 16 C -0.193 4.193 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.055 4.055 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.635 -7.782 -2.110 17.591 hybrid contribution -0.052 0.068 0.263 0.277 sum 15.583 -7.713 -1.847 17.485 Atomic orbital electron populations 1.69920 1.06364 1.26927 1.50866 1.25049 0.94651 0.99017 0.94281 0.86826 0.80178 0.83474 0.78863 1.20218 1.21869 1.18779 1.20972 0.89268 0.94466 1.50232 0.91198 1.19157 0.95751 0.94409 0.90625 0.94380 1.21853 0.92039 1.00682 1.00392 1.21693 0.98448 0.98457 0.97294 1.22073 0.99074 0.97061 0.88872 1.62299 1.11344 1.46886 1.05482 1.21699 0.93663 0.89231 0.97675 1.22247 1.00967 0.96426 0.99687 1.21466 0.95153 0.98766 0.99864 1.21539 0.95858 0.96979 1.01252 1.21506 0.99275 0.94888 0.99850 1.21654 0.94908 0.99073 0.99542 1.22251 0.83702 0.98889 1.00691 0.92742 0.93346 0.93102 0.93130 0.92123 0.95483 0.91681 0.90428 0.92121 0.91338 0.92471 0.92067 0.92455 0.92310 0.92037 0.92267 0.91389 0.91911 0.91710 0.95498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.01 27.01 -169.99 -4.59 17.42 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.36 6.80 56.52 0.38 -5.98 16 7 C -0.51 -14.36 8.86 -34.44 -0.31 -14.66 16 8 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 9 C 0.02 0.47 1.94 -91.69 -0.18 0.29 16 10 H 0.04 0.95 5.26 -51.93 -0.27 0.67 16 11 C -0.11 -2.40 5.27 -26.61 -0.14 -2.54 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.06 0.93 4.67 -3.84 -0.02 0.91 16 14 N -0.54 -9.45 4.70 -226.68 -1.06 -10.51 16 15 C 0.09 1.25 2.33 -67.71 -0.16 1.09 16 16 C -0.15 -2.11 4.51 -26.73 -0.12 -2.23 16 17 C -0.11 -1.28 5.92 -26.73 -0.16 -1.44 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 19 C -0.12 -1.19 5.92 -26.76 -0.16 -1.35 16 20 C -0.11 -1.39 4.78 -26.76 -0.13 -1.52 16 21 C 0.07 1.48 4.10 -3.83 -0.02 1.46 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.45 6.76 -51.93 -0.35 0.10 16 28 H 0.06 0.94 5.87 -51.93 -0.30 0.63 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 31 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.76 6.20 -51.93 -0.32 0.44 16 40 H 0.06 1.37 8.12 -51.92 -0.42 0.95 16 41 H 0.03 0.56 6.61 -51.93 -0.34 0.22 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -29.26 298.53 -9.53 -38.79 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.35 Total: -1.58 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.80 Total: -21.64 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.29 Total: -37.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.59 Total: 17.42 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.26 -9.53 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107468126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.556 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds