Wall clock time and date at job start Sun Mar 29 2020 21:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00159 * 2 1 4 4 H 1.48501 * 109.47244 * 264.78378 * 3 2 1 5 5 H 1.48497 * 109.47183 * 24.78885 * 3 2 1 6 6 H 1.48504 * 109.46799 * 144.78669 * 3 2 1 7 7 C 1.37879 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99849 * 5.50931 * 7 2 1 9 9 C 1.50695 * 119.99970 * 185.50989 * 7 2 1 10 10 H 1.09004 * 109.50687 * 335.11933 * 9 7 2 11 11 C 1.53117 * 109.50513 * 95.19983 * 9 7 2 12 12 C 1.53125 * 109.16036 * 177.59355 * 11 9 7 13 13 C 1.53027 * 109.27987 * 302.34653 * 12 11 9 14 14 N 1.46845 * 109.52690 * 59.17959 * 13 12 11 15 15 C 1.46902 * 111.00415 * 174.16103 * 14 13 12 16 16 C 1.53004 * 109.46862 * 66.04633 * 15 14 13 17 17 C 1.53002 * 109.46545 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47098 * 60.00185 * 17 16 15 19 19 C 1.52995 * 109.47256 * 299.99446 * 18 17 16 20 20 C 1.52999 * 109.46837 * 306.04783 * 15 14 13 21 21 C 1.46851 * 111.19480 * 298.26029 * 14 13 12 22 22 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.52505 * 57.69407 * 11 9 7 24 24 H 1.08997 * 109.57315 * 297.53175 * 11 9 7 25 25 H 1.09000 * 109.50063 * 182.39866 * 12 11 9 26 26 H 1.09005 * 109.53272 * 62.30521 * 12 11 9 27 27 H 1.09006 * 109.46422 * 299.16363 * 13 12 11 28 28 H 1.09002 * 109.45403 * 179.19193 * 13 12 11 29 29 H 1.09004 * 109.46907 * 186.04521 * 15 14 13 30 30 H 1.09000 * 109.46807 * 299.99593 * 16 15 14 31 31 H 1.08993 * 109.47018 * 60.00013 * 16 15 14 32 32 H 1.09000 * 109.46833 * 179.97438 * 17 16 15 33 33 H 1.08991 * 109.47166 * 299.99551 * 17 16 15 34 34 H 1.09006 * 109.46997 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47339 * 60.00036 * 18 17 16 36 36 H 1.09004 * 109.47214 * 300.00707 * 19 18 17 37 37 H 1.08997 * 109.47481 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46937 * 299.99748 * 20 15 14 39 39 H 1.08991 * 109.47630 * 59.99879 * 20 15 14 40 40 H 1.09010 * 109.45955 * 181.75711 * 21 14 13 41 41 H 1.08995 * 109.46429 * 301.71959 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3960 2.6819 0.5870 6 1 3.4873 1.4743 0.8073 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1272 -0.0907 9 6 3.5062 -1.1972 0.1248 10 1 3.9031 -0.2460 -0.2301 11 6 3.8964 -1.3986 1.5916 12 6 5.4225 -1.4607 1.7018 13 6 5.9471 -2.5942 0.8177 14 7 5.5484 -2.3550 -0.5752 15 6 6.1511 -3.3489 -1.4735 16 6 5.5759 -4.7323 -1.1627 17 6 6.2041 -5.7675 -2.0980 18 6 7.7201 -5.7874 -1.8920 19 6 8.2952 -4.4041 -2.2028 20 6 7.6671 -3.3689 -1.2682 21 6 4.0865 -2.3384 -0.7136 22 1 -0.4850 0.8401 0.0004 23 1 3.4666 -2.3308 1.9583 24 1 3.5218 -0.5658 2.1868 25 1 5.7052 -1.6465 2.7379 26 1 5.8505 -0.5140 1.3719 27 1 5.5300 -3.5424 1.1571 28 1 7.0346 -2.6318 0.8828 29 1 5.9278 -3.0865 -2.5077 30 1 5.7992 -4.9945 -0.1286 31 1 4.4960 -4.7179 -1.3090 32 1 5.7948 -6.7531 -1.8763 33 1 5.9813 -5.5054 -3.1321 34 1 8.1676 -6.5252 -2.5580 35 1 7.9429 -6.0495 -0.8578 36 1 8.0723 -4.1419 -3.2371 37 1 9.3752 -4.4183 -2.0565 38 1 8.0768 -2.3834 -1.4896 39 1 7.8903 -3.6312 -0.2341 40 1 3.8226 -2.1904 -1.7609 41 1 3.6781 -3.2877 -0.3671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107468126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:52 Heat of formation + Delta-G solvation = -45.695199 kcal Electronic energy + Delta-G solvation = -17988.530016 eV Core-core repulsion = 15479.897750 eV Total energy + Delta-G solvation = -2508.632267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85984 -38.22480 -35.19458 -33.76159 -32.19547 -31.48756 -29.62682 -26.96603 -25.07451 -23.70041 -22.99272 -22.08084 -20.72024 -19.83778 -18.91722 -17.30143 -16.22179 -15.86645 -15.74633 -15.35571 -15.22018 -14.97504 -14.59216 -14.55926 -14.13542 -13.69885 -13.44016 -13.13036 -13.01590 -12.90894 -12.82577 -12.39623 -12.09047 -11.96338 -11.80075 -11.68972 -11.45686 -11.31128 -11.14713 -11.04458 -10.98632 -10.69734 -10.58508 -9.03810 -8.29616 -6.32684 1.35703 1.36041 1.48626 2.35755 3.00750 3.13085 3.77789 3.87445 4.05482 4.16378 4.16693 4.24654 4.32597 4.41087 4.48950 4.55580 4.61025 4.65508 4.69308 4.74038 4.85464 4.87818 4.95317 4.99095 5.08530 5.16408 5.20284 5.23923 5.26409 5.27132 5.29679 5.38160 5.48043 5.56798 5.57598 5.67565 5.76475 6.20257 6.36304 6.42389 6.75339 7.33525 8.87516 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006468 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.788752 B = 4328.229017 C = 4538.155075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.515 4.515 8 H 0.027 0.973 9 C 0.018 3.982 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.114 4.114 13 C 0.058 3.942 14 N -0.543 5.543 15 C 0.084 3.916 16 C -0.150 4.150 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.107 4.107 21 C 0.085 3.915 22 H 0.265 0.735 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.129 -8.470 -1.799 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.554 4.554 8 H 0.046 0.954 9 C -0.001 4.001 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.069 4.069 14 N -0.266 5.266 15 C -0.024 4.024 16 C -0.189 4.189 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.042 4.042 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 19.150 -7.889 -1.930 20.801 hybrid contribution -1.200 -0.007 0.190 1.215 sum 17.950 -7.896 -1.740 19.687 Atomic orbital electron populations 1.70065 1.08227 1.28018 1.52800 1.25910 0.95406 1.02929 0.94094 0.85778 0.79320 0.78649 0.79414 1.19411 1.21424 1.16998 1.21254 0.91838 0.92856 1.49418 0.95446 1.19123 0.92787 0.95304 0.92920 0.94910 1.21726 0.95376 0.99669 0.98044 1.21651 0.94886 0.99135 0.99546 1.22145 1.00802 0.96376 0.87624 1.62240 1.08754 1.48649 1.06970 1.21798 0.95446 0.88724 0.96467 1.22169 0.99466 0.96917 1.00326 1.21457 0.96392 0.98104 0.99061 1.21528 0.94392 0.97391 1.01952 1.21497 1.00232 0.94146 0.99271 1.21613 0.92529 0.99885 1.00485 1.21874 0.86262 0.97070 0.99036 0.92582 0.94243 0.94383 0.90173 0.92076 0.95572 0.88579 0.91308 0.92210 0.94010 0.91834 0.92111 0.90699 0.91966 0.91997 0.90326 0.91490 0.91339 0.93132 0.96590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.94 45.73 27.01 68.60 1.85 47.59 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.25 -11.17 6.80 99.48 0.68 -10.49 16 7 C -0.52 -30.12 8.86 25.60 0.23 -29.89 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.02 0.86 1.94 -11.49 -0.02 0.84 16 10 H 0.03 1.60 5.26 -2.39 -0.01 1.59 16 11 C -0.11 -4.67 5.27 30.68 0.16 -4.51 16 12 C -0.11 -3.75 6.09 30.65 0.19 -3.56 16 13 C 0.06 1.74 4.67 86.32 0.40 2.14 16 14 N -0.54 -18.37 4.70 -871.10 -4.09 -22.46 16 15 C 0.08 2.31 2.33 44.92 0.10 2.41 16 16 C -0.15 -3.95 4.51 30.60 0.14 -3.81 16 17 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 18 C -0.12 -1.90 5.92 30.59 0.18 -1.71 16 19 C -0.11 -1.90 5.92 30.58 0.18 -1.72 16 20 C -0.11 -2.27 4.78 30.58 0.15 -2.13 16 21 C 0.09 3.59 4.10 86.32 0.35 3.94 16 22 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.03 0.80 6.76 -2.38 -0.02 0.79 16 28 H 0.10 2.35 5.87 -2.39 -0.01 2.34 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.58 6.68 -2.39 -0.02 1.56 16 31 H 0.04 1.30 6.50 -2.39 -0.02 1.29 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.38 6.20 -2.39 -0.01 1.37 16 40 H 0.05 2.22 8.12 -2.38 -0.02 2.20 16 41 H 0.02 0.70 6.61 -2.39 -0.02 0.68 16 Total: -1.00 -65.01 298.53 1.71 -63.30 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.94 Total: 10.63 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.71 Total: -38.85 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.79 Total: -82.68 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.85 Total: 47.59 kcal Total: -65.01 1.71 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107468126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.608 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds