Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00682 * 2 1 4 4 H 1.48497 * 109.47145 * 270.00240 * 3 2 1 5 5 H 1.48500 * 109.46838 * 30.00025 * 3 2 1 6 6 H 1.48498 * 109.47219 * 150.00221 * 3 2 1 7 7 C 1.37885 * 119.99415 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 175.16007 * 7 2 1 9 9 C 1.50696 * 119.99856 * 355.15307 * 7 2 1 10 10 H 1.09001 * 109.50578 * 35.14493 * 9 7 2 11 11 C 1.53117 * 109.50890 * 275.02063 * 9 7 2 12 12 C 1.53117 * 109.16145 * 182.40989 * 11 9 7 13 13 C 1.53036 * 109.28076 * 57.65608 * 12 11 9 14 14 N 1.46847 * 109.52160 * 300.81591 * 13 12 11 15 15 C 1.46890 * 111.00309 * 185.84117 * 14 13 12 16 16 C 1.53006 * 109.47536 * 170.79276 * 15 14 13 17 17 C 1.52997 * 109.46933 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47496 * 60.00379 * 17 16 15 19 19 C 1.53002 * 109.46751 * 299.99388 * 18 17 16 20 20 C 1.53002 * 109.47130 * 60.00438 * 19 18 17 21 21 C 1.46854 * 111.19605 * 61.74561 * 14 13 12 22 22 H 0.96993 * 120.00814 * 185.18672 * 1 2 3 23 23 H 1.09010 * 109.52068 * 302.30998 * 11 9 7 24 24 H 1.08995 * 109.52144 * 62.49894 * 11 9 7 25 25 H 1.08997 * 109.49994 * 297.70722 * 12 11 9 26 26 H 1.09000 * 109.53038 * 177.61378 * 12 11 9 27 27 H 1.09005 * 109.45665 * 180.80824 * 13 12 11 28 28 H 1.08994 * 109.46415 * 60.83411 * 13 12 11 29 29 H 1.09002 * 109.47433 * 290.79485 * 15 14 13 30 30 H 1.08999 * 109.46383 * 300.00008 * 16 15 14 31 31 H 1.08991 * 109.46858 * 59.99980 * 16 15 14 32 32 H 1.08995 * 109.47691 * 299.99542 * 17 16 15 33 33 H 1.09007 * 109.46892 * 179.97438 * 17 16 15 34 34 H 1.09006 * 109.47508 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47806 * 59.99019 * 18 17 16 36 36 H 1.08996 * 109.47539 * 300.00116 * 19 18 17 37 37 H 1.09001 * 109.47012 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.47104 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47172 * 59.99454 * 20 19 18 40 40 H 1.08996 * 109.46216 * 178.24389 * 21 14 13 41 41 H 1.08997 * 109.45902 * 58.26949 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0816 -1.1959 -0.0795 9 6 1.2548 -2.4969 0.1092 10 1 0.3043 -2.4153 -0.4180 11 6 0.9965 -2.8155 1.5844 12 6 0.2883 -4.1690 1.6896 13 6 1.1501 -5.2435 1.0229 14 7 1.3679 -4.8932 -0.3865 15 6 2.0742 -5.9698 -1.0935 16 6 2.0805 -5.6756 -2.5950 17 6 2.8156 -6.7973 -3.3313 18 6 2.1042 -8.1274 -3.0753 19 6 2.0980 -8.4216 -1.5738 20 6 1.3627 -7.2999 -0.8374 21 6 2.0887 -3.6199 -0.5119 22 1 -0.4851 -0.8365 0.0759 23 1 1.9453 -2.8584 2.1193 24 1 0.3666 -2.0398 2.0196 25 1 -0.6778 -4.1141 1.1879 26 1 0.1393 -4.4216 2.7394 27 1 0.6419 -6.2059 1.0835 28 1 2.1107 -5.3073 1.5339 29 1 3.1003 -6.0305 -0.7309 30 1 1.0543 -5.6150 -2.9575 31 1 2.5869 -4.7279 -2.7774 32 1 3.8417 -6.8584 -2.9688 33 1 2.8197 -6.5880 -4.4011 34 1 2.6277 -8.9265 -3.6003 35 1 1.0780 -8.0663 -3.4377 36 1 3.1240 -8.4827 -1.2112 37 1 1.5907 -9.3690 -1.3913 38 1 1.3587 -7.5093 0.2323 39 1 0.3367 -7.2388 -1.2000 40 1 2.2622 -3.4031 -1.5659 41 1 3.0449 -3.6914 0.0064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107468129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = -50.056742 kcal Electronic energy + Delta-G solvation = -17881.927125 eV Core-core repulsion = 15373.105727 eV Total energy + Delta-G solvation = -2508.821397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70956 -38.40659 -35.55389 -33.57575 -32.22572 -31.09876 -29.71780 -26.61481 -24.98588 -24.14649 -22.50434 -22.22297 -20.65611 -20.57629 -18.83170 -17.26347 -16.16748 -15.86440 -15.67060 -15.52340 -15.22880 -14.97864 -14.48771 -14.32733 -14.29704 -13.66772 -13.51839 -13.34419 -13.02616 -12.66602 -12.63660 -12.30003 -12.06107 -11.98113 -11.90924 -11.80883 -11.50135 -11.42387 -11.17311 -10.99239 -10.84963 -10.45609 -10.34239 -9.19278 -8.60053 -6.30706 1.51186 1.60279 1.77685 2.56157 2.95910 3.21601 3.74352 3.80502 4.00798 4.08287 4.16648 4.23836 4.29393 4.36266 4.42367 4.47312 4.56597 4.61509 4.62546 4.73546 4.74599 4.79538 4.90334 4.95111 4.99908 5.14021 5.16637 5.19798 5.23043 5.26465 5.29193 5.33665 5.38926 5.53310 5.56344 5.74695 5.99168 6.22011 6.31784 6.35016 6.68171 7.50072 8.79153 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.006206 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.291945 B = 4510.491885 C = 5054.911028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.029 4.029 3 Si 1.114 2.886 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.608 4.608 8 H 0.040 0.960 9 C 0.032 3.968 10 H 0.005 0.995 11 C -0.102 4.102 12 C -0.112 4.112 13 C 0.061 3.939 14 N -0.547 5.547 15 C 0.085 3.915 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.110 4.110 21 C 0.089 3.911 22 H 0.258 0.742 23 H 0.037 0.963 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.023 0.977 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -16.829 -2.429 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.227 4.227 3 Si 0.936 3.064 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.646 4.646 8 H 0.058 0.942 9 C 0.013 3.987 10 H 0.023 0.977 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.066 4.066 14 N -0.271 5.271 15 C -0.023 4.023 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.038 4.038 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.787 -15.150 -2.712 15.850 hybrid contribution 0.817 -1.137 0.514 1.492 sum 4.605 -16.288 -2.198 17.068 Atomic orbital electron populations 1.70857 1.07783 1.30407 1.48495 1.27198 0.96577 1.06174 0.92740 0.82976 0.74168 0.71552 0.77680 1.19968 1.20856 1.19766 1.22302 0.94286 0.93381 1.54673 0.94179 1.18825 0.94899 0.92693 0.92319 0.97710 1.21590 0.98028 0.95651 0.98730 1.21610 0.98659 0.94497 1.00181 1.22127 0.98140 0.98951 0.87394 1.62022 1.49269 1.02556 1.13261 1.21690 0.94895 0.91363 0.94332 1.21573 1.00846 0.98382 0.94143 1.21502 0.99051 0.94491 1.00012 1.21540 1.00875 0.96685 0.96278 1.21517 1.00577 0.97811 0.95164 1.21673 0.99690 0.92705 1.00728 1.21871 0.93811 0.89072 0.99075 0.93129 0.94390 0.95796 0.92871 0.90341 0.88355 0.95828 0.95549 0.92305 0.93924 0.92052 0.91157 0.90366 0.92023 0.91956 0.90178 0.91299 0.91711 0.92802 0.97487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 13.63 21.45 0.29 -58.48 16 2 C -0.03 -1.69 5.45 84.66 0.46 -1.23 16 3 Si 1.11 51.52 29.91 68.60 2.05 53.57 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.61 -35.25 8.32 25.60 0.21 -35.04 16 8 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 9 C 0.03 1.67 1.99 -11.49 -0.02 1.65 16 10 H 0.00 0.28 6.67 -2.39 -0.02 0.26 16 11 C -0.10 -4.80 5.27 30.67 0.16 -4.64 16 12 C -0.11 -4.17 6.09 30.65 0.19 -3.98 16 13 C 0.06 2.04 5.00 86.33 0.43 2.48 16 14 N -0.55 -20.29 4.52 -871.09 -3.94 -24.23 16 15 C 0.09 2.55 1.96 44.92 0.09 2.64 16 16 C -0.11 -3.24 5.11 30.60 0.16 -3.08 16 17 C -0.11 -2.43 5.92 30.59 0.18 -2.24 16 18 C -0.12 -2.07 5.92 30.59 0.18 -1.89 16 19 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 20 C -0.11 -2.57 4.66 30.60 0.14 -2.43 16 21 C 0.09 4.02 4.55 86.33 0.39 4.41 16 22 H 0.26 16.47 6.66 -92.71 -0.62 15.85 16 23 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.10 2.69 5.83 -2.38 -0.01 2.68 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.41 6.40 -2.39 -0.02 1.39 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.51 6.19 -2.39 -0.01 1.50 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.05 2.50 6.18 -2.39 -0.01 2.48 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -64.94 303.41 2.27 -62.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.11 Total: 11.67 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 2.76 Total: -45.20 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -3.65 Total: -82.71 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -64.94 2.27 -62.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107468129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.612 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds