Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00151 * 2 1 4 4 C 1.52997 * 109.47070 * 293.95363 * 3 2 1 5 5 C 1.50702 * 109.46995 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99494 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00464 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99500 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00493 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47478 * 119.99786 * 9 7 5 12 12 H 1.48506 * 109.46760 * 239.99778 * 9 7 5 13 13 C 1.46899 * 111.00172 * 123.95877 * 2 1 3 14 14 C 1.53002 * 109.47199 * 66.04308 * 13 2 1 15 15 C 1.52996 * 109.47060 * 180.02562 * 14 13 2 16 16 N 1.46501 * 109.47323 * 180.02562 * 15 14 13 17 17 C 1.36890 * 126.39537 * 270.03108 * 16 15 14 18 18 C 1.34669 * 106.81617 * 179.97438 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.46762 * 296.04370 * 1 2 3 22 22 H 1.09003 * 109.47224 * 56.04260 * 1 2 3 23 23 H 1.08999 * 109.47192 * 176.04286 * 1 2 3 24 24 H 1.08999 * 109.46679 * 53.95613 * 3 2 1 25 25 H 1.09002 * 109.46863 * 173.95628 * 3 2 1 26 26 H 1.08991 * 109.47634 * 300.00038 * 4 3 2 27 27 H 1.09002 * 109.47061 * 60.00386 * 4 3 2 28 28 H 0.97001 * 119.99846 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47151 * 306.04736 * 13 2 1 30 30 H 1.08998 * 109.47572 * 186.04199 * 13 2 1 31 31 H 1.09006 * 109.47212 * 60.00163 * 14 13 2 32 32 H 1.09002 * 109.47266 * 300.00392 * 14 13 2 33 33 H 1.09002 * 109.47343 * 60.00395 * 15 14 13 34 34 H 1.08998 * 109.47519 * 299.99774 * 15 14 13 35 35 H 1.07996 * 126.59258 * 359.97438 * 17 16 15 36 36 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 37 37 H 1.08006 * 125.64594 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1711 3.4645 -1.3180 6 1 2.7192 3.8325 -0.4631 7 6 1.9651 4.2821 -2.4088 8 7 1.2981 3.8338 -3.4499 9 14 2.6345 6.0260 -2.4088 10 1 3.3426 6.2843 -1.1293 11 1 3.5805 6.1932 -3.5411 12 1 1.5119 6.9871 -2.5556 13 6 1.9955 -0.7661 1.1375 14 6 1.6314 -2.2427 0.9702 15 6 2.1792 -3.0404 2.1552 16 7 1.8312 -4.4544 1.9948 17 6 0.6975 -5.0691 2.4539 18 6 0.7812 -6.3629 2.0900 19 7 1.9347 -6.5338 1.4272 20 6 2.5693 -5.3951 1.3671 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 1.5611 1.9273 0.8310 25 1 3.0798 1.3443 0.1082 26 1 2.0658 1.5016 -2.1491 27 1 0.5472 2.0845 -1.4264 28 1 1.1535 4.4089 -4.2175 29 1 1.5611 -0.3874 2.0628 30 1 3.0797 -0.6613 1.1755 31 1 2.0658 -2.6214 0.0449 32 1 0.5472 -2.3476 0.9321 33 1 1.7445 -2.6617 3.0803 34 1 3.2635 -2.9357 2.1937 35 1 -0.1089 -4.6055 3.0026 36 1 0.0463 -7.1280 2.2926 37 1 3.5256 -5.2318 0.8925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119746447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = 55.241510 kcal Electronic energy + Delta-G solvation = -16094.875339 eV Core-core repulsion = 13487.079673 eV Total energy + Delta-G solvation = -2607.795666 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.12407 -37.73003 -35.11131 -33.13152 -31.36410 -29.60970 -29.16438 -26.71908 -25.44411 -23.39612 -21.44604 -21.23452 -20.83585 -19.95492 -17.56027 -16.47291 -15.67830 -15.48294 -14.80309 -14.58348 -14.51271 -14.06118 -13.87658 -13.68614 -13.25238 -12.79241 -12.46578 -12.10285 -12.02761 -11.65240 -11.22745 -11.17780 -10.96586 -10.67712 -10.55138 -10.10397 -9.91677 -9.77881 -9.40511 -9.15007 -8.64862 -8.37258 -7.84259 -6.03326 -4.06077 1.93720 2.64189 3.07088 3.28334 3.35885 3.39395 4.23328 4.40119 4.46077 4.60794 4.72386 4.90465 4.98054 5.13188 5.26118 5.32595 5.34067 5.54318 5.57961 5.70405 5.81532 5.93060 6.05515 6.16509 6.19192 6.37495 6.45773 6.60590 6.89652 7.04601 7.40016 7.47719 7.73700 7.84191 7.95594 8.03288 8.38795 9.01357 9.57873 11.08064 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.067220 B = 0.003384 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.443353 B = 8272.893352 C = 8324.397420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.058 3.942 14 C -0.131 4.131 15 C 0.104 3.896 16 N -0.455 5.455 17 C -0.057 4.057 18 C -0.035 4.035 19 N -0.500 5.500 20 C 0.182 3.818 21 H 0.017 0.983 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -13.921 12.414 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.072 4.072 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.137 5.137 17 C -0.190 4.190 18 C -0.183 4.183 19 N -0.218 5.218 20 C -0.100 4.100 21 H 0.036 0.964 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.257 -14.679 11.501 18.650 hybrid contribution -0.308 2.237 0.992 2.466 sum -0.051 -12.442 12.493 17.632 Atomic orbital electron populations 1.22429 0.88044 1.00928 1.01064 1.62061 1.07693 1.16188 1.40683 1.22360 0.98515 0.84954 1.00531 1.19108 0.96954 0.94091 0.90892 1.21220 1.35199 0.97749 1.02000 0.92757 1.25001 0.95275 0.98523 0.95555 1.69983 1.40793 1.36358 1.06026 0.86535 0.78754 0.84693 0.78002 1.19783 1.20938 1.21023 1.21978 1.00364 0.92163 0.92650 1.21984 1.02038 0.95156 0.97809 1.21955 1.02267 0.77221 1.00422 1.45648 1.16796 1.09724 1.41566 1.22742 0.93151 0.94977 1.08143 1.22289 0.97377 0.95250 1.03357 1.70287 1.07129 1.24706 1.19710 1.25022 0.99960 0.83764 1.01268 0.96425 0.90174 0.92512 0.96182 0.92086 0.95698 0.96436 0.93007 0.95323 0.90797 0.90168 0.91158 0.89161 0.88627 0.81145 0.81576 0.77993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.13 60.06 0.55 0.93 16 2 N -0.54 -9.31 4.76 -242.92 -1.16 -10.47 16 3 C 0.06 1.29 4.90 -3.83 -0.02 1.27 16 4 C 0.03 0.69 4.90 -27.88 -0.14 0.55 16 5 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 6 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 14 C -0.13 -1.37 5.46 -26.73 -0.15 -1.51 16 15 C 0.10 0.83 6.15 -4.04 -0.02 0.80 16 16 N -0.46 -4.46 2.75 -118.58 -0.33 -4.78 16 17 C -0.06 -0.55 11.58 -16.56 -0.19 -0.75 16 18 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 19 N -0.50 -6.54 11.25 -14.66 -0.16 -6.71 16 20 C 0.18 1.97 12.56 -90.38 -1.14 0.84 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.08 1.47 6.30 -51.93 -0.33 1.15 16 23 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 24 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 25 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.20 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -32.37 307.82 -8.97 -41.34 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.93 Total: -3.30 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.75 Total: -11.17 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.91 Total: -47.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.37 -8.97 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119746447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.585 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds