Wall clock time and date at job start Sun Mar 29 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00151 * 2 1 4 4 C 1.52997 * 109.47070 * 293.95363 * 3 2 1 5 5 C 1.50702 * 109.46995 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99494 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00464 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99500 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00493 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46820 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47478 * 119.99786 * 9 7 5 12 12 H 1.48506 * 109.46760 * 239.99778 * 9 7 5 13 13 C 1.46899 * 111.00172 * 123.95877 * 2 1 3 14 14 C 1.53002 * 109.47199 * 66.04308 * 13 2 1 15 15 C 1.52996 * 109.47060 * 180.02562 * 14 13 2 16 16 N 1.46501 * 109.47323 * 180.02562 * 15 14 13 17 17 C 1.36890 * 126.39537 * 270.03108 * 16 15 14 18 18 C 1.34669 * 106.81617 * 179.97438 * 17 16 15 19 19 N 1.34134 * 108.02026 * 0.02562 * 18 17 16 20 20 C 1.30493 * 109.25480 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.46762 * 296.04370 * 1 2 3 22 22 H 1.09003 * 109.47224 * 56.04260 * 1 2 3 23 23 H 1.08999 * 109.47192 * 176.04286 * 1 2 3 24 24 H 1.08999 * 109.46679 * 53.95613 * 3 2 1 25 25 H 1.09002 * 109.46863 * 173.95628 * 3 2 1 26 26 H 1.08991 * 109.47634 * 300.00038 * 4 3 2 27 27 H 1.09002 * 109.47061 * 60.00386 * 4 3 2 28 28 H 0.97001 * 119.99846 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47151 * 306.04736 * 13 2 1 30 30 H 1.08998 * 109.47572 * 186.04199 * 13 2 1 31 31 H 1.09006 * 109.47212 * 60.00163 * 14 13 2 32 32 H 1.09002 * 109.47266 * 300.00392 * 14 13 2 33 33 H 1.09002 * 109.47343 * 60.00395 * 15 14 13 34 34 H 1.08998 * 109.47519 * 299.99774 * 15 14 13 35 35 H 1.07996 * 126.59258 * 359.97438 * 17 16 15 36 36 H 1.08002 * 125.99042 * 180.26007 * 18 17 16 37 37 H 1.08006 * 125.64594 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1711 3.4645 -1.3180 6 1 2.7192 3.8325 -0.4631 7 6 1.9651 4.2821 -2.4088 8 7 1.2981 3.8338 -3.4499 9 14 2.6345 6.0260 -2.4088 10 1 3.3426 6.2843 -1.1293 11 1 3.5805 6.1932 -3.5411 12 1 1.5119 6.9871 -2.5556 13 6 1.9955 -0.7661 1.1375 14 6 1.6314 -2.2427 0.9702 15 6 2.1792 -3.0404 2.1552 16 7 1.8312 -4.4544 1.9948 17 6 0.6975 -5.0691 2.4539 18 6 0.7812 -6.3629 2.0900 19 7 1.9347 -6.5338 1.4272 20 6 2.5693 -5.3951 1.3671 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 1.5611 1.9273 0.8310 25 1 3.0798 1.3443 0.1082 26 1 2.0658 1.5016 -2.1491 27 1 0.5472 2.0845 -1.4264 28 1 1.1535 4.4089 -4.2175 29 1 1.5611 -0.3874 2.0628 30 1 3.0797 -0.6613 1.1755 31 1 2.0658 -2.6214 0.0449 32 1 0.5472 -2.3476 0.9321 33 1 1.7445 -2.6617 3.0803 34 1 3.2635 -2.9357 2.1937 35 1 -0.1089 -4.6055 3.0026 36 1 0.0463 -7.1280 2.2926 37 1 3.5256 -5.2318 0.8925 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119746447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:28 Heat of formation + Delta-G solvation = 35.586051 kcal Electronic energy + Delta-G solvation = -16095.727663 eV Core-core repulsion = 13487.079673 eV Total energy + Delta-G solvation = -2608.647991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.87889 -39.00539 -36.13015 -35.04017 -32.64472 -30.90340 -30.22879 -27.96007 -26.94052 -24.85613 -22.42160 -22.21468 -21.62282 -21.52471 -18.67066 -18.19622 -16.69512 -16.56328 -16.47735 -15.91387 -15.60546 -15.16383 -14.85656 -14.71474 -14.25812 -14.15068 -14.04074 -13.30208 -13.22235 -12.95404 -12.85614 -12.62703 -12.56399 -12.34162 -11.79517 -11.64797 -11.34185 -11.23097 -10.91203 -10.55399 -10.51696 -9.41031 -9.18707 -8.20571 -6.31935 1.18755 1.40370 1.40741 1.53883 1.94452 2.26202 2.40056 3.09374 3.13149 3.76587 3.92507 3.95482 4.07884 4.21108 4.27102 4.36696 4.46874 4.50905 4.61646 4.63612 4.71325 4.76736 4.83062 4.96080 5.06424 5.09580 5.23696 5.41907 5.46683 5.65919 5.78542 5.87136 6.08616 6.28876 6.32334 6.35657 6.86266 7.18227 7.37525 8.91779 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.067220 B = 0.003384 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.443353 B = 8272.893352 C = 8324.397420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.560 5.560 3 C 0.080 3.920 4 C 0.033 3.967 5 C -0.543 4.543 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.059 3.941 14 C -0.119 4.119 15 C 0.110 3.890 16 N -0.456 5.456 17 C -0.053 4.053 18 C -0.062 4.062 19 N -0.542 5.542 20 C 0.173 3.827 21 H 0.028 0.972 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.022 0.978 25 H 0.067 0.933 26 H -0.010 1.010 27 H -0.006 1.006 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.199 0.801 36 H 0.179 0.821 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -13.399 14.279 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.284 5.284 3 C -0.048 4.048 4 C -0.004 4.004 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.069 4.069 14 C -0.157 4.157 15 C -0.012 4.012 16 N -0.137 5.137 17 C -0.186 4.186 18 C -0.209 4.209 19 N -0.261 5.261 20 C -0.110 4.110 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.008 0.992 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.215 0.785 36 H 0.196 0.804 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.909 -14.170 13.390 19.517 hybrid contribution -0.545 2.014 0.398 2.124 sum 0.364 -12.156 13.788 18.385 Atomic orbital electron populations 1.22361 0.87624 1.01903 1.00094 1.61941 1.08271 1.14489 1.43719 1.21972 0.98892 0.86633 0.97257 1.18952 0.95007 0.93727 0.92758 1.21675 1.35215 0.98935 1.02342 0.92005 1.25984 0.95456 1.03318 0.95091 1.70122 1.42116 1.38219 1.06828 0.85376 0.78154 0.78830 0.78532 1.18371 1.20437 1.20467 1.22053 1.00872 0.92609 0.91389 1.21814 1.01607 0.93940 0.98386 1.22007 1.03560 0.75774 0.99841 1.45771 1.16622 1.10216 1.41134 1.23189 0.93483 0.94609 1.07330 1.22674 0.97532 0.96627 1.04050 1.70244 1.08389 1.26316 1.21122 1.25490 1.00710 0.83605 1.01193 0.95303 0.93550 0.90154 0.95944 0.91487 0.99152 0.98818 0.92800 0.93705 0.89842 0.91789 0.91745 0.87074 0.86680 0.78458 0.80386 0.75884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.13 127.69 1.17 2.06 16 2 N -0.56 -18.68 4.76 -922.45 -4.39 -23.07 16 3 C 0.08 3.22 4.90 86.30 0.42 3.65 16 4 C 0.03 1.74 4.90 29.85 0.15 1.89 16 5 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.06 1.33 4.96 86.30 0.43 1.76 16 14 C -0.12 -2.17 5.46 30.59 0.17 -2.00 16 15 C 0.11 1.36 6.15 86.38 0.53 1.89 16 16 N -0.46 -7.81 2.75 -529.07 -1.46 -9.26 16 17 C -0.05 -0.91 11.58 83.08 0.96 0.05 16 18 C -0.06 -1.33 11.87 83.52 0.99 -0.33 16 19 N -0.54 -13.87 11.25 -200.31 -2.25 -16.13 16 20 C 0.17 3.49 12.56 180.27 2.26 5.75 16 21 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 1.76 6.30 -2.39 -0.02 1.74 16 23 H 0.08 2.12 6.47 -2.39 -0.02 2.11 16 24 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 25 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H -0.01 -0.37 6.47 -2.39 -0.02 -0.38 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.06 1.26 6.55 -2.39 -0.02 1.25 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.14 307.82 3.00 -68.14 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.02 Total: 6.42 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 7.77 Total: -15.30 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.82 Total: -105.12 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.14 3.00 -68.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119746447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.723 kcal (2) G-P(sol) polarization free energy of solvation -71.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds