Wall clock time and date at job start Sun Mar 29 2020 21:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47409 * 2 1 4 4 C 1.36932 * 120.00206 * 270.32923 * 3 2 1 5 5 H 1.07995 * 120.00204 * 326.15361 * 4 3 2 6 6 C 1.38817 * 120.00192 * 146.14417 * 4 3 2 7 7 N 1.31624 * 119.99815 * 336.90272 * 6 4 3 8 8 Si 1.86795 * 119.99998 * 156.89869 * 6 4 3 9 9 H 1.48493 * 109.47352 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46880 * 120.00509 * 8 6 4 11 11 H 1.48505 * 109.46876 * 239.99986 * 8 6 4 12 12 C 1.46501 * 119.99888 * 90.33007 * 3 2 1 13 13 C 1.53001 * 109.47121 * 90.00073 * 12 3 2 14 14 C 1.53000 * 109.47063 * 180.02562 * 13 12 3 15 15 C 1.50694 * 109.47132 * 180.02562 * 14 13 12 16 16 C 1.39876 * 126.04248 * 90.02272 * 15 14 13 17 17 N 1.30828 * 108.20487 * 179.97438 * 16 15 14 18 18 N 1.40082 * 108.20670 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.03760 * 179.97438 * 18 17 16 20 20 C 1.34942 * 107.92741 * 359.75881 * 18 17 16 21 21 H 1.08993 * 109.47365 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46818 * 300.00163 * 1 2 3 23 23 H 1.08997 * 109.47211 * 59.99543 * 1 2 3 24 24 H 1.09002 * 109.47356 * 240.00368 * 2 1 3 25 25 H 1.08997 * 109.47211 * 120.00457 * 2 1 3 26 26 H 0.96992 * 120.00187 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47256 * 330.00207 * 12 3 2 28 28 H 1.09000 * 109.47261 * 210.00192 * 12 3 2 29 29 H 1.08999 * 109.46946 * 59.99944 * 13 12 3 30 30 H 1.09000 * 109.47149 * 300.00187 * 13 12 3 31 31 H 1.09000 * 109.47170 * 300.00027 * 14 13 12 32 32 H 1.08999 * 109.47405 * 60.00078 * 14 13 12 33 33 H 1.08001 * 125.89501 * 0.02562 * 16 15 14 34 34 H 1.09005 * 109.47231 * 89.98046 * 19 18 17 35 35 H 1.09003 * 109.47317 * 209.97540 * 19 18 17 36 36 H 1.08995 * 109.47690 * 329.97972 * 19 18 17 37 37 H 1.08004 * 126.13588 * 180.23938 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0290 -1.1858 5 1 2.5925 1.4774 -2.0449 6 6 2.0122 3.3948 -1.2839 7 7 1.1858 3.9858 -0.4471 8 14 2.8783 4.3939 -2.6034 9 1 3.7476 3.5004 -3.4101 10 1 1.8674 5.0296 -3.4862 11 1 3.7077 5.4462 -1.9629 12 6 2.2695 2.0694 1.2687 13 6 3.7169 1.8280 1.7021 14 6 3.9789 2.5462 3.0274 15 6 5.4046 2.3090 3.4539 16 6 6.5061 3.1048 3.1222 17 7 7.5699 2.5812 3.6752 18 7 7.1785 1.4344 4.3780 19 6 8.0606 0.5484 5.1416 20 6 5.8446 1.2925 4.2313 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.0267 4.9401 -0.5153 27 1 1.5928 1.6838 2.0313 28 1 2.1018 3.1388 1.1414 29 1 4.3935 2.2136 0.9395 30 1 3.8845 0.7586 1.8294 31 1 3.8111 3.6157 2.9005 32 1 3.3022 2.1602 3.7898 33 1 6.4823 3.9977 2.5151 34 1 8.1229 0.8979 6.1722 35 1 7.6601 -0.4652 5.1253 36 1 9.0552 0.5533 4.6956 37 1 5.2372 0.5066 4.6556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121037127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:11 Heat of formation + Delta-G solvation = 85.837423 kcal Electronic energy + Delta-G solvation = -16706.026871 eV Core-core repulsion = 14099.557943 eV Total energy + Delta-G solvation = -2606.468928 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96590 -36.23131 -34.01136 -32.43860 -31.70267 -29.83728 -28.34857 -26.86232 -24.80256 -23.33990 -21.41054 -20.89706 -19.81658 -19.53840 -16.77621 -16.34366 -15.33095 -14.81134 -14.34613 -14.08940 -13.82759 -13.52382 -13.11246 -12.96837 -12.59302 -12.48125 -12.27759 -11.88976 -11.44179 -11.11877 -10.98360 -10.74737 -10.62859 -10.45582 -10.19621 -10.09125 -9.76079 -9.66736 -9.38082 -9.23432 -8.40231 -8.06352 -6.49519 -5.67728 -3.21157 2.05042 2.65733 3.06298 3.41661 3.50460 3.53487 4.56499 4.58131 4.99161 5.03169 5.24113 5.28680 5.40568 5.55406 5.66223 5.75794 6.05999 6.18219 6.26310 6.29399 6.41905 6.51796 6.58621 6.69125 6.76266 6.88611 6.98358 6.99795 7.04979 7.19851 7.32804 7.41854 7.86088 7.87392 7.94344 8.61035 9.30079 9.94578 10.50961 11.31509 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.006157 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.854626 B = 4546.570109 C = 5320.803672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.588 5.588 4 C -0.251 4.251 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.288 1.288 12 C 0.142 3.858 13 C -0.124 4.124 14 C -0.041 4.041 15 C -0.214 4.214 16 C 0.053 3.947 17 N -0.306 5.306 18 N -0.385 5.385 19 C 0.106 3.894 20 C 0.043 3.957 21 H 0.028 0.972 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.252 0.748 27 H 0.018 0.982 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -5.984 10.702 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.308 5.308 4 C -0.381 4.381 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.214 1.214 12 C 0.016 3.984 13 C -0.164 4.164 14 C -0.080 4.080 15 C -0.225 4.225 16 C -0.133 4.133 17 N -0.128 5.128 18 N -0.169 5.169 19 C -0.036 4.036 20 C -0.101 4.101 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.199 0.801 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.356 -5.843 10.953 15.545 hybrid contribution -0.465 0.435 -0.738 0.975 sum 8.891 -5.408 10.215 14.582 Atomic orbital electron populations 1.22290 0.99945 0.98165 1.01827 1.20842 0.91811 0.87887 0.97893 1.43915 1.74563 1.09793 1.02553 1.19098 1.37368 0.91160 0.90441 0.92271 1.25025 0.97578 0.98493 0.98093 1.69993 1.33792 1.10003 1.39389 0.86393 0.79523 0.80336 0.81576 1.20245 1.21866 1.21432 1.21007 0.90230 1.01763 0.85444 1.22141 1.01479 0.98116 0.94638 1.19932 0.89102 1.01236 0.97717 1.20371 0.97942 0.98380 1.05856 1.23855 0.89944 1.00310 0.99208 1.77270 1.23746 0.98419 1.13373 1.48368 1.05996 1.21570 1.40955 1.21746 0.94696 0.92036 0.95111 1.22278 0.84875 1.01156 1.01830 0.95288 0.93871 0.92783 0.94314 0.95052 0.93780 0.96330 0.88317 0.92463 0.94403 0.91355 0.92254 0.80133 0.91237 0.89783 0.89665 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 37.16 0.38 -2.95 16 2 C 0.14 3.08 6.39 -4.04 -0.03 3.06 16 3 N -0.59 -14.79 2.45 -173.24 -0.42 -15.22 16 4 C -0.25 -6.93 9.49 -15.06 -0.14 -7.07 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 7 N -0.89 -25.52 11.31 55.49 0.63 -24.90 16 8 Si 0.89 21.78 29.61 -169.99 -5.03 16.74 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.14 3.30 5.29 -4.04 -0.02 3.28 16 13 C -0.12 -2.47 5.52 -26.73 -0.15 -2.61 16 14 C -0.04 -0.67 5.70 -27.89 -0.16 -0.83 16 15 C -0.21 -3.37 5.35 -105.05 -0.56 -3.93 16 16 C 0.05 0.84 11.96 -17.37 -0.21 0.64 16 17 N -0.31 -4.94 12.57 30.62 0.39 -4.56 16 18 N -0.39 -5.21 4.01 -68.16 -0.27 -5.48 16 19 C 0.11 0.89 11.47 59.85 0.69 1.57 16 20 C 0.04 0.59 11.40 -17.22 -0.20 0.39 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 25 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.10 2.61 5.31 -51.93 -0.28 2.33 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.17 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -31.67 312.32 -6.65 -38.32 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.16 Total: -1.27 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.48 Total: -8.34 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.31 Total: -50.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.67 -6.65 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121037127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.154 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds