Wall clock time and date at job start Sun Mar 29 2020 21:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47409 * 2 1 4 4 C 1.36932 * 120.00206 * 270.32923 * 3 2 1 5 5 H 1.07995 * 120.00204 * 326.15361 * 4 3 2 6 6 C 1.38817 * 120.00192 * 146.14417 * 4 3 2 7 7 N 1.31624 * 119.99815 * 336.90272 * 6 4 3 8 8 Si 1.86795 * 119.99998 * 156.89869 * 6 4 3 9 9 H 1.48493 * 109.47352 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46880 * 120.00509 * 8 6 4 11 11 H 1.48505 * 109.46876 * 239.99986 * 8 6 4 12 12 C 1.46501 * 119.99888 * 90.33007 * 3 2 1 13 13 C 1.53001 * 109.47121 * 90.00073 * 12 3 2 14 14 C 1.53000 * 109.47063 * 180.02562 * 13 12 3 15 15 C 1.50694 * 109.47132 * 180.02562 * 14 13 12 16 16 C 1.39876 * 126.04248 * 90.02272 * 15 14 13 17 17 N 1.30828 * 108.20487 * 179.97438 * 16 15 14 18 18 N 1.40082 * 108.20670 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.03760 * 179.97438 * 18 17 16 20 20 C 1.34942 * 107.92741 * 359.75881 * 18 17 16 21 21 H 1.08993 * 109.47365 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46818 * 300.00163 * 1 2 3 23 23 H 1.08997 * 109.47211 * 59.99543 * 1 2 3 24 24 H 1.09002 * 109.47356 * 240.00368 * 2 1 3 25 25 H 1.08997 * 109.47211 * 120.00457 * 2 1 3 26 26 H 0.96992 * 120.00187 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47256 * 330.00207 * 12 3 2 28 28 H 1.09000 * 109.47261 * 210.00192 * 12 3 2 29 29 H 1.08999 * 109.46946 * 59.99944 * 13 12 3 30 30 H 1.09000 * 109.47149 * 300.00187 * 13 12 3 31 31 H 1.09000 * 109.47170 * 300.00027 * 14 13 12 32 32 H 1.08999 * 109.47405 * 60.00078 * 14 13 12 33 33 H 1.08001 * 125.89501 * 0.02562 * 16 15 14 34 34 H 1.09005 * 109.47231 * 89.98046 * 19 18 17 35 35 H 1.09003 * 109.47317 * 209.97540 * 19 18 17 36 36 H 1.08995 * 109.47690 * 329.97972 * 19 18 17 37 37 H 1.08004 * 126.13588 * 180.23938 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0290 -1.1858 5 1 2.5925 1.4774 -2.0449 6 6 2.0122 3.3948 -1.2839 7 7 1.1858 3.9858 -0.4471 8 14 2.8783 4.3939 -2.6034 9 1 3.7476 3.5004 -3.4101 10 1 1.8674 5.0296 -3.4862 11 1 3.7077 5.4462 -1.9629 12 6 2.2695 2.0694 1.2687 13 6 3.7169 1.8280 1.7021 14 6 3.9789 2.5462 3.0274 15 6 5.4046 2.3090 3.4539 16 6 6.5061 3.1048 3.1222 17 7 7.5699 2.5812 3.6752 18 7 7.1785 1.4344 4.3780 19 6 8.0606 0.5484 5.1416 20 6 5.8446 1.2925 4.2313 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.0267 4.9401 -0.5153 27 1 1.5928 1.6838 2.0313 28 1 2.1018 3.1388 1.1414 29 1 4.3935 2.2136 0.9395 30 1 3.8845 0.7586 1.8294 31 1 3.8111 3.6157 2.9005 32 1 3.3022 2.1602 3.7898 33 1 6.4823 3.9977 2.5151 34 1 8.1229 0.8979 6.1722 35 1 7.6601 -0.4652 5.1253 36 1 9.0552 0.5533 4.6956 37 1 5.2372 0.5066 4.6556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121037127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:10 Heat of formation + Delta-G solvation = 67.715494 kcal Electronic energy + Delta-G solvation = -16706.812697 eV Core-core repulsion = 14099.557943 eV Total energy + Delta-G solvation = -2607.254753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05702 -38.06205 -35.32900 -33.72939 -33.57963 -31.28489 -29.92241 -28.08127 -26.39855 -25.04536 -23.00004 -21.95168 -21.48113 -20.89588 -18.58174 -17.55993 -16.78870 -16.27733 -15.92001 -15.68090 -15.33250 -14.99961 -14.51393 -14.26452 -13.88532 -13.64636 -13.62277 -13.24159 -13.09240 -12.88404 -12.70566 -12.47883 -12.25435 -12.14194 -11.99386 -11.73071 -11.47399 -11.37280 -11.13781 -10.46594 -10.31220 -9.22061 -8.51699 -7.75114 -5.32652 0.98150 1.45596 1.49671 1.58668 1.75805 1.87295 2.55386 3.29279 3.69144 3.80870 4.05544 4.32003 4.37770 4.46630 4.47999 4.52220 4.70091 4.76652 4.80371 4.80570 4.93059 4.94443 5.01556 5.11667 5.18270 5.32881 5.35362 5.47070 5.60245 5.66673 5.74052 5.77355 6.02653 6.22474 6.53380 6.75660 7.24521 7.97324 8.46242 9.19903 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.006157 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.854626 B = 4546.570109 C = 5320.803672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.605 5.605 4 C -0.261 4.261 5 H 0.051 0.949 6 C -0.036 4.036 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.288 1.288 12 C 0.143 3.857 13 C -0.104 4.104 14 C -0.027 4.027 15 C -0.244 4.244 16 C 0.035 3.965 17 N -0.336 5.336 18 N -0.382 5.382 19 C 0.094 3.906 20 C 0.059 3.941 21 H 0.067 0.933 22 H 0.033 0.967 23 H 0.024 0.976 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.250 0.750 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -7.752 11.976 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.011 3.989 3 N -0.327 5.327 4 C -0.391 4.391 5 H 0.069 0.931 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.215 1.215 12 C 0.017 3.983 13 C -0.144 4.144 14 C -0.066 4.066 15 C -0.255 4.255 16 C -0.150 4.150 17 N -0.158 5.158 18 N -0.165 5.165 19 C -0.046 4.046 20 C -0.087 4.087 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.199 0.801 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.034 -7.632 12.236 17.569 hybrid contribution -0.647 0.867 -1.068 1.520 sum 9.387 -6.765 11.168 16.081 Atomic orbital electron populations 1.22140 0.99013 1.00041 0.99861 1.21008 0.92514 0.86277 0.99143 1.44178 1.75181 1.10977 1.02329 1.19267 1.36977 0.91676 0.91204 0.93084 1.25621 0.98274 0.99297 1.00129 1.70107 1.34974 1.09923 1.40950 0.85516 0.78440 0.78911 0.79465 1.19718 1.21855 1.21468 1.20948 0.92431 0.99778 0.85148 1.21863 0.98251 0.98781 0.95516 1.19714 0.90563 1.00039 0.96295 1.20326 0.97169 0.99995 1.08040 1.24013 0.90404 1.00875 0.99693 1.77206 1.24159 0.99949 1.14524 1.48802 1.06718 1.20951 1.40060 1.22182 0.94314 0.92694 0.95373 1.22783 0.85157 1.00720 1.00040 0.91422 0.94768 0.95707 0.94223 0.92520 0.94064 0.95440 0.91517 0.95514 0.93507 0.92673 0.90347 0.80060 0.89391 0.86754 0.89404 0.77693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 10.24 71.98 0.74 -5.24 16 2 C 0.14 5.70 6.39 86.38 0.55 6.26 16 3 N -0.61 -30.44 2.45 -702.00 -1.72 -32.16 16 4 C -0.26 -14.55 9.49 84.04 0.80 -13.75 16 5 H 0.05 2.88 7.93 -2.91 -0.02 2.85 16 6 C -0.04 -2.04 4.95 84.86 0.42 -1.62 16 7 N -0.91 -53.65 11.31 21.65 0.24 -53.41 16 8 Si 0.95 45.49 29.61 68.60 2.03 47.52 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 C 0.14 6.66 5.29 86.38 0.46 7.12 16 13 C -0.10 -4.11 5.52 30.59 0.17 -3.94 16 14 C -0.03 -0.87 5.70 29.85 0.17 -0.70 16 15 C -0.24 -7.38 5.35 -20.14 -0.11 -7.49 16 16 C 0.03 1.12 11.96 85.24 1.02 2.14 16 17 N -0.34 -10.55 12.57 -57.02 -0.72 -11.27 16 18 N -0.38 -9.38 4.01 -369.55 -1.48 -10.86 16 19 C 0.09 1.26 11.47 127.77 1.47 2.72 16 20 C 0.06 1.44 11.40 83.54 0.95 2.40 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 25 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 28 H 0.07 3.61 5.31 -2.39 -0.01 3.60 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.18 5.40 8.06 -2.91 -0.02 5.38 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.21 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -68.77 312.32 6.00 -62.77 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.02 Total: 9.51 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 6.63 Total: -12.11 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -3.68 Total: -107.70 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.77 6.00 -62.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121037127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.486 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds