Wall clock time and date at job start Sun Mar 29 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00048 * 2 1 4 4 C 1.52999 * 109.47224 * 124.99686 * 3 2 1 5 5 C 1.52998 * 109.46960 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47552 * 55.00311 * 5 4 3 7 7 N 1.46896 * 109.47449 * 295.00045 * 5 4 3 8 8 C 1.46900 * 111.00198 * 132.63958 * 7 5 4 9 9 C 1.52996 * 109.47328 * 175.84176 * 8 7 5 10 10 C 1.52996 * 109.47406 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47463 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99866 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99998 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47181 * 60.00082 * 15 13 11 17 17 H 1.48505 * 109.46914 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47391 * 299.99599 * 15 13 11 19 19 C 1.53003 * 109.46965 * 174.99989 * 5 4 3 20 20 C 1.53002 * 117.49764 * 132.87304 * 19 5 4 21 21 C 1.53005 * 117.49776 * 64.21480 * 19 5 4 22 22 H 1.08004 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.00120 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.99664 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.47264 * 4.99461 * 3 2 1 26 26 H 1.09002 * 109.46914 * 244.99846 * 3 2 1 27 27 H 1.09005 * 109.46846 * 60.00426 * 4 3 2 28 28 H 1.08993 * 109.47094 * 300.00118 * 4 3 2 29 29 H 1.00904 * 111.00233 * 8.68400 * 7 5 4 30 30 H 1.08993 * 109.47164 * 295.84625 * 8 7 5 31 31 H 1.09001 * 109.47052 * 55.84142 * 8 7 5 32 32 H 1.09003 * 109.47419 * 300.00430 * 9 8 7 33 33 H 1.09001 * 109.47082 * 59.99985 * 9 8 7 34 34 H 1.09005 * 109.47105 * 299.99948 * 10 9 8 35 35 H 1.09001 * 109.47144 * 59.99862 * 10 9 8 36 36 H 0.97008 * 119.99671 * 180.02562 * 14 13 11 37 37 H 1.09001 * 115.55123 * 278.54548 * 19 5 4 38 38 H 1.09004 * 117.50026 * 0.02562 * 20 19 5 39 39 H 1.09008 * 117.49972 * 145.02318 * 20 19 5 40 40 H 1.08998 * 117.49937 * 214.97892 * 21 19 5 41 41 H 1.09000 * 117.49921 * 359.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1812 6 1 3.0925 3.4866 1.1810 7 7 4.6450 2.7351 -0.0182 8 6 4.4953 4.0356 -0.6847 9 6 5.4640 4.1177 -1.8661 10 6 5.3086 5.4724 -2.5599 11 6 6.2623 5.5531 -3.7240 12 1 6.9144 4.7214 -3.9464 13 6 6.3030 6.6890 -4.5043 14 7 5.5093 7.7019 -4.2331 15 14 7.4857 6.7892 -5.9468 16 1 7.1829 5.7018 -6.9116 17 1 7.3347 8.1041 -6.6203 18 1 8.8792 6.6413 -5.4556 19 6 4.6800 2.7390 2.4305 20 6 6.1343 3.1761 2.2434 21 6 5.8093 1.7157 2.5671 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 3.7400 0.5066 1.0921 28 1 2.4772 1.2356 2.1130 29 1 4.4415 1.9778 -0.6531 30 1 3.4725 4.1434 -1.0453 31 1 4.7171 4.8343 0.0232 32 1 6.4870 4.0098 -1.5054 33 1 5.2423 3.3190 -2.5739 34 1 4.2856 5.5807 -2.9206 35 1 5.5306 6.2708 -1.8518 36 1 5.5378 8.5010 -4.7824 37 1 4.1732 3.0540 3.3427 38 1 6.4643 3.4062 1.2303 39 1 6.5844 3.7783 3.0326 40 1 6.0456 1.3578 3.5691 41 1 5.9253 0.9844 1.7672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125318072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:27 Heat of formation + Delta-G solvation = 16.404103 kcal Electronic energy + Delta-G solvation = -16633.746935 eV Core-core repulsion = 14127.807496 eV Total energy + Delta-G solvation = -2505.939439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.81170 -35.71189 -35.06578 -33.25304 -31.73428 -29.80723 -26.80739 -25.27926 -22.70809 -22.33073 -21.71735 -20.22261 -19.92579 -19.11129 -16.34540 -16.22078 -15.72005 -15.02904 -14.59714 -14.30926 -14.27616 -13.93064 -13.03564 -13.02606 -12.45579 -12.20714 -12.05253 -11.66254 -11.47938 -11.20581 -11.14877 -10.97541 -10.86130 -10.76012 -10.53565 -10.45384 -10.04184 -9.76264 -9.65208 -9.41817 -9.27215 -9.01865 -8.31040 -8.09203 -5.96399 -3.98389 2.12380 3.35897 3.39891 3.42738 4.01364 4.40387 4.52017 4.64550 4.88278 4.88992 5.11562 5.20573 5.23273 5.28263 5.39346 5.48816 5.60904 5.66682 5.75174 5.77843 5.86119 5.89663 5.96731 6.04077 6.14497 6.22386 6.35356 6.38044 6.47240 6.61230 6.64912 6.76980 6.86111 7.18409 7.42711 7.70490 7.72688 7.87986 8.04282 8.47684 9.08721 9.65420 11.15018 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.004622 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.103882 B = 6056.702697 C = 6926.646436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.102 4.102 4 C -0.119 4.119 5 C 0.113 3.887 6 H 0.058 0.942 7 N -0.685 5.685 8 C 0.061 3.939 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.173 4.173 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.337 0.663 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -13.496 12.504 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.165 4.165 3 C -0.139 4.139 4 C -0.157 4.157 5 C 0.003 3.997 6 H 0.076 0.924 7 N -0.317 5.317 8 C -0.068 4.068 9 C -0.144 4.144 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.171 4.171 20 C -0.198 4.198 21 C -0.210 4.210 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.156 0.844 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.742 -13.121 12.787 19.200 hybrid contribution -0.330 0.063 -1.185 1.232 sum -6.071 -13.058 11.602 18.492 Atomic orbital electron populations 1.23840 0.96023 1.01707 1.02156 1.22961 0.95991 0.98504 0.99053 1.20871 0.98408 0.95382 0.99241 1.21833 0.97630 0.98107 0.98150 1.21012 0.92058 0.96344 0.90267 0.92413 1.60540 1.56948 1.05512 1.08664 1.22188 0.98035 0.89971 0.96601 1.21602 0.97885 1.00419 0.94445 1.19057 0.96896 0.90727 0.94853 1.21226 1.20987 1.00850 1.12648 0.92764 1.25022 0.95880 0.95815 0.97753 1.69959 1.38519 1.05504 1.39661 0.86667 0.81598 0.77096 0.82688 1.20293 1.21327 1.20224 1.22312 0.91036 1.05583 0.98119 1.22931 0.96883 0.96362 1.03672 1.22747 1.03647 0.93253 1.01344 0.88662 0.88706 0.87460 0.91542 0.90782 0.91102 0.91425 0.84374 0.95889 0.91487 0.92670 0.93796 0.96905 0.96632 0.93016 0.88781 0.86619 0.90374 0.90219 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 14.32 29.01 0.42 -1.39 16 2 C -0.15 -1.39 9.52 -36.03 -0.34 -1.74 16 3 C -0.10 -1.04 5.51 -27.88 -0.15 -1.20 16 4 C -0.12 -1.20 4.42 -26.73 -0.12 -1.32 16 5 C 0.11 1.37 2.58 -67.71 -0.17 1.19 16 6 H 0.06 0.75 7.59 -51.93 -0.39 0.35 16 7 N -0.68 -9.53 4.57 -106.73 -0.49 -10.02 16 8 C 0.06 1.03 5.24 -3.83 -0.02 1.01 16 9 C -0.11 -2.19 5.45 -26.74 -0.15 -2.33 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 C -0.15 -1.80 5.80 -90.61 -0.53 -2.32 16 20 C -0.16 -2.10 9.86 -26.69 -0.26 -2.36 16 21 C -0.17 -1.97 9.73 -26.69 -0.26 -2.23 16 22 H 0.10 0.84 7.84 -52.48 -0.41 0.43 16 23 H 0.09 0.73 8.06 -52.49 -0.42 0.31 16 24 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 25 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 26 H 0.07 0.82 6.77 -51.93 -0.35 0.47 16 27 H 0.07 0.71 7.76 -51.93 -0.40 0.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.34 4.48 6.73 -39.29 -0.26 4.21 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.77 6.91 -51.93 -0.36 1.41 16 39 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.10 7.93 -51.93 -0.41 0.68 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -29.39 333.57 -9.50 -38.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.61 Total: 1.70 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -2.14 Total: -25.94 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.25 Total: -36.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.39 -9.50 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125318072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds