Wall clock time and date at job start Sun Mar 29 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00048 * 2 1 4 4 C 1.52999 * 109.47224 * 124.99686 * 3 2 1 5 5 C 1.52998 * 109.46960 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47552 * 55.00311 * 5 4 3 7 7 N 1.46896 * 109.47449 * 295.00045 * 5 4 3 8 8 C 1.46900 * 111.00198 * 132.63958 * 7 5 4 9 9 C 1.52996 * 109.47328 * 175.84176 * 8 7 5 10 10 C 1.52996 * 109.47406 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47463 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99866 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99998 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47181 * 60.00082 * 15 13 11 17 17 H 1.48505 * 109.46914 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47391 * 299.99599 * 15 13 11 19 19 C 1.53003 * 109.46965 * 174.99989 * 5 4 3 20 20 C 1.53002 * 117.49764 * 132.87304 * 19 5 4 21 21 C 1.53005 * 117.49776 * 64.21480 * 19 5 4 22 22 H 1.08004 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.00120 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.99664 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.47264 * 4.99461 * 3 2 1 26 26 H 1.09002 * 109.46914 * 244.99846 * 3 2 1 27 27 H 1.09005 * 109.46846 * 60.00426 * 4 3 2 28 28 H 1.08993 * 109.47094 * 300.00118 * 4 3 2 29 29 H 1.00904 * 111.00233 * 8.68400 * 7 5 4 30 30 H 1.08993 * 109.47164 * 295.84625 * 8 7 5 31 31 H 1.09001 * 109.47052 * 55.84142 * 8 7 5 32 32 H 1.09003 * 109.47419 * 300.00430 * 9 8 7 33 33 H 1.09001 * 109.47082 * 59.99985 * 9 8 7 34 34 H 1.09005 * 109.47105 * 299.99948 * 10 9 8 35 35 H 1.09001 * 109.47144 * 59.99862 * 10 9 8 36 36 H 0.97008 * 119.99671 * 180.02562 * 14 13 11 37 37 H 1.09001 * 115.55123 * 278.54548 * 19 5 4 38 38 H 1.09004 * 117.50026 * 0.02562 * 20 19 5 39 39 H 1.09008 * 117.49972 * 145.02318 * 20 19 5 40 40 H 1.08998 * 117.49937 * 214.97892 * 21 19 5 41 41 H 1.09000 * 117.49921 * 359.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1812 6 1 3.0925 3.4866 1.1810 7 7 4.6450 2.7351 -0.0182 8 6 4.4953 4.0356 -0.6847 9 6 5.4640 4.1177 -1.8661 10 6 5.3086 5.4724 -2.5599 11 6 6.2623 5.5531 -3.7240 12 1 6.9144 4.7214 -3.9464 13 6 6.3030 6.6890 -4.5043 14 7 5.5093 7.7019 -4.2331 15 14 7.4857 6.7892 -5.9468 16 1 7.1829 5.7018 -6.9116 17 1 7.3347 8.1041 -6.6203 18 1 8.8792 6.6413 -5.4556 19 6 4.6800 2.7390 2.4305 20 6 6.1343 3.1761 2.2434 21 6 5.8093 1.7157 2.5671 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 3.7400 0.5066 1.0921 28 1 2.4772 1.2356 2.1130 29 1 4.4415 1.9778 -0.6531 30 1 3.4725 4.1434 -1.0453 31 1 4.7171 4.8343 0.0232 32 1 6.4870 4.0098 -1.5054 33 1 5.2423 3.3190 -2.5739 34 1 4.2856 5.5807 -2.9206 35 1 5.5306 6.2708 -1.8518 36 1 5.5378 8.5010 -4.7824 37 1 4.1732 3.0540 3.3427 38 1 6.4643 3.4062 1.2303 39 1 6.5844 3.7783 3.0326 40 1 6.0456 1.3578 3.5691 41 1 5.9253 0.9844 1.7672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125318072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:27 Heat of formation + Delta-G solvation = 1.529247 kcal Electronic energy + Delta-G solvation = -16634.391957 eV Core-core repulsion = 14127.807496 eV Total energy + Delta-G solvation = -2506.584461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84001 -36.71243 -36.42720 -34.99153 -33.24034 -31.17157 -28.21947 -26.74753 -24.18156 -23.55445 -22.65353 -21.89744 -20.72165 -20.15106 -18.48752 -17.26031 -16.79131 -16.48625 -16.11994 -15.54911 -15.40753 -15.06432 -14.45375 -14.08058 -13.94346 -13.72125 -13.31262 -13.17287 -12.73616 -12.63978 -12.47940 -12.42949 -12.16434 -12.00829 -11.79514 -11.69744 -11.51284 -11.36851 -11.09906 -10.99461 -10.61571 -10.54627 -10.17837 -9.27496 -8.19679 -6.30854 1.39935 1.41344 1.43284 1.51185 2.41322 3.06126 3.13350 3.26747 3.81415 3.97748 4.06631 4.21435 4.25916 4.30692 4.37025 4.44297 4.47073 4.62846 4.73379 4.75941 4.84792 4.86071 4.96566 4.99044 5.06136 5.07547 5.20322 5.22325 5.28263 5.35220 5.43451 5.52738 5.62147 5.75786 5.76371 5.86677 5.90294 6.15678 6.29162 6.57729 6.85998 7.38400 8.92076 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.004622 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.103882 B = 6056.702697 C = 6926.646436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.100 4.100 4 C -0.107 4.107 5 C 0.113 3.887 6 H 0.049 0.951 7 N -0.680 5.680 8 C 0.078 3.922 9 C -0.090 4.090 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.150 4.150 20 C -0.180 4.180 21 C -0.157 4.157 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.118 0.882 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.343 0.657 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -15.151 12.816 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.174 4.174 3 C -0.138 4.138 4 C -0.145 4.145 5 C 0.003 3.997 6 H 0.067 0.933 7 N -0.312 5.312 8 C -0.051 4.051 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.169 4.169 20 C -0.217 4.217 21 C -0.194 4.194 22 H 0.111 0.889 23 H 0.127 0.873 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.514 -14.797 13.110 20.524 hybrid contribution -0.439 0.593 -1.252 1.453 sum -5.953 -14.204 11.858 19.437 Atomic orbital electron populations 1.24007 0.96039 1.02362 1.01273 1.23006 0.96215 0.98389 0.99819 1.20829 0.98285 0.95821 0.98819 1.21728 0.97433 0.96779 0.98584 1.21069 0.91887 0.97365 0.89379 0.93306 1.60450 1.57762 1.03971 1.09051 1.21830 0.96632 0.91554 0.95125 1.21343 0.98678 0.97284 0.95458 1.18962 0.95025 0.92961 0.94237 1.21674 1.21596 1.01300 1.13616 0.92283 1.25988 0.97680 0.95302 1.00855 1.70095 1.40162 1.06152 1.41030 0.85503 0.79248 0.77466 0.78851 1.19121 1.20757 1.19188 1.22383 0.90565 1.05656 0.98330 1.22860 0.98187 0.98199 1.02502 1.22777 1.02318 0.92105 1.02182 0.88889 0.87270 0.86362 0.92299 0.91819 0.90518 0.90306 0.83707 0.96177 0.92498 0.93053 0.93269 0.99238 0.99230 0.92782 0.87398 0.89211 0.89763 0.88395 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.25 14.32 67.78 0.97 -2.28 16 2 C -0.16 -2.68 9.52 25.65 0.24 -2.44 16 3 C -0.10 -1.93 5.51 29.85 0.16 -1.77 16 4 C -0.11 -1.96 4.42 30.59 0.14 -1.82 16 5 C 0.11 2.59 2.58 44.92 0.12 2.71 16 6 H 0.05 1.23 7.59 -2.39 -0.02 1.21 16 7 N -0.68 -18.57 4.57 -491.60 -2.25 -20.82 16 8 C 0.08 2.70 5.24 86.30 0.45 3.15 16 9 C -0.09 -3.78 5.45 30.59 0.17 -3.61 16 10 C 0.03 1.40 4.97 29.85 0.15 1.55 16 11 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.15 -3.32 5.80 -10.79 -0.06 -3.38 16 20 C -0.18 -4.55 9.86 30.62 0.30 -4.24 16 21 C -0.16 -3.25 9.73 30.62 0.30 -2.95 16 22 H 0.09 1.53 7.84 -2.91 -0.02 1.51 16 23 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 24 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 25 H 0.06 1.21 7.79 -2.38 -0.02 1.19 16 26 H 0.06 1.36 6.77 -2.39 -0.02 1.34 16 27 H 0.08 1.35 7.76 -2.38 -0.02 1.33 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.34 8.78 6.73 -89.69 -0.60 8.18 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 2.76 6.91 -2.38 -0.02 2.74 16 39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.93 7.93 -2.39 -0.02 1.91 16 Total: -1.00 -63.14 333.57 4.05 -59.09 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.35 Total: 18.54 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 3.63 Total: -46.18 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -1.96 Total: -78.42 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.14 4.05 -59.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125318072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.616 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds