Wall clock time and date at job start Sun Mar 29 2020 22:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99725 * 2 1 4 4 C 1.53001 * 109.47209 * 124.99924 * 3 2 1 5 5 C 1.52999 * 109.47298 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47035 * 305.00063 * 5 4 3 7 7 N 1.46902 * 109.47026 * 64.99957 * 5 4 3 8 8 C 1.46898 * 111.00219 * 210.12458 * 7 5 4 9 9 C 1.53001 * 109.47360 * 184.94535 * 8 7 5 10 10 C 1.52996 * 109.46899 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46826 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99608 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99644 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00675 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46993 * 89.99810 * 15 13 11 17 17 H 1.48497 * 109.47615 * 210.00362 * 15 13 11 18 18 H 1.48506 * 109.46808 * 330.00396 * 15 13 11 19 19 C 1.52991 * 109.47196 * 184.99978 * 5 4 3 20 20 C 1.53004 * 117.51694 * 226.47092 * 19 5 4 21 21 C 1.52999 * 60.00105 * 107.48278 * 20 19 5 22 22 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.00153 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.00221 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47394 * 4.99665 * 3 2 1 26 26 H 1.08999 * 109.47039 * 244.99976 * 3 2 1 27 27 H 1.08997 * 109.47155 * 59.99594 * 4 3 2 28 28 H 1.08999 * 109.47163 * 299.99976 * 4 3 2 29 29 H 1.00900 * 111.00069 * 86.16926 * 7 5 4 30 30 H 1.09004 * 109.47078 * 304.94637 * 8 7 5 31 31 H 1.08999 * 109.46993 * 64.94332 * 8 7 5 32 32 H 1.08997 * 109.46673 * 299.99576 * 9 8 7 33 33 H 1.08998 * 109.46723 * 60.00059 * 9 8 7 34 34 H 1.08998 * 109.47835 * 299.99764 * 10 9 8 35 35 H 1.09005 * 109.47430 * 60.00577 * 10 9 8 36 36 H 0.96998 * 120.00357 * 179.97438 * 14 13 11 37 37 H 1.08998 * 115.55124 * 80.77309 * 19 5 4 38 38 H 1.09004 * 117.49983 * 214.96837 * 20 19 5 39 39 H 1.08996 * 117.49993 * 359.97438 * 20 19 5 40 40 H 1.09003 * 117.49896 * 252.51183 * 21 20 19 41 41 H 1.09003 * 117.50071 * 107.48752 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 1 4.2865 2.7965 0.2156 7 7 2.8643 3.7644 1.4214 8 6 3.3219 4.9940 0.7608 9 6 2.3914 6.1499 1.1335 10 6 2.8685 7.4307 0.4460 11 6 1.9515 8.5691 0.8126 12 1 1.1127 8.3965 1.4705 13 6 2.1836 9.8311 0.3080 14 7 1.3837 10.8247 0.6283 15 14 3.6340 10.1297 -0.8306 16 1 3.2110 9.9153 -2.2378 17 1 4.1142 11.5252 -0.6652 18 1 4.7301 9.1859 -0.4939 19 6 4.8582 2.6361 2.2863 20 6 4.9619 3.8662 3.1902 21 6 4.3668 2.5656 3.7335 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1317 0.0895 26 1 2.6212 1.4027 -0.9314 27 1 3.7399 0.5067 1.0921 28 1 2.4772 1.2357 2.1130 29 1 2.7276 3.9143 2.4098 30 1 4.3364 5.2251 1.0857 31 1 3.3100 4.8519 -0.3198 32 1 1.3770 5.9189 0.8085 33 1 2.4034 6.2920 2.2141 34 1 3.8829 7.6616 0.7712 35 1 2.8568 7.2890 -0.6348 36 1 1.5471 11.7126 0.2737 37 1 5.7821 2.1116 2.0423 38 1 5.9539 4.1509 3.5410 39 1 4.2766 4.6915 2.9975 40 1 3.2898 2.5351 3.8984 41 1 4.9674 1.9945 4.4417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125318254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:29 Heat of formation + Delta-G solvation = 21.516006 kcal Electronic energy + Delta-G solvation = -16738.822036 eV Core-core repulsion = 14233.104266 eV Total energy + Delta-G solvation = -2505.717770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.28729 -35.60077 -35.06982 -33.12263 -31.83561 -30.20732 -27.02546 -25.36258 -22.85851 -22.10286 -21.97790 -20.28722 -19.78413 -19.16293 -16.92574 -16.50767 -15.67169 -15.18109 -14.53071 -14.26485 -14.10522 -13.73229 -13.44188 -12.74754 -12.70824 -12.39666 -12.17059 -11.79681 -11.62538 -11.45402 -11.25622 -11.00458 -10.88697 -10.81995 -10.72246 -10.32843 -10.01206 -9.92552 -9.71327 -9.51379 -9.31524 -9.14237 -8.51220 -8.18340 -6.01660 -3.99286 2.25974 3.32342 3.39442 3.43201 3.70057 4.34004 4.47464 4.60984 4.79793 4.84280 4.96630 5.06653 5.13353 5.32366 5.34523 5.50819 5.54316 5.58990 5.66936 5.77904 5.81036 5.88396 5.92561 5.94210 6.02807 6.04441 6.18451 6.21585 6.34740 6.58554 6.62286 6.64279 6.79742 6.93926 7.27783 7.37326 7.47390 7.61542 7.83088 8.57612 9.03948 9.61117 11.11982 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.004909 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.677547 B = 5702.975810 C = 6400.707745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.090 4.090 4 C -0.093 4.093 5 C 0.113 3.887 6 H 0.078 0.922 7 N -0.683 5.683 8 C 0.053 3.947 9 C -0.101 4.101 10 C -0.012 4.012 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.181 4.181 20 C -0.188 4.188 21 C -0.178 4.178 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.339 0.661 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -20.875 1.784 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C -0.128 4.128 4 C -0.131 4.131 5 C 0.003 3.997 6 H 0.097 0.903 7 N -0.315 5.315 8 C -0.075 4.075 9 C -0.139 4.139 10 C -0.050 4.050 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.201 4.201 20 C -0.225 4.225 21 C -0.215 4.215 22 H 0.116 0.884 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.258 -20.851 1.239 21.539 hybrid contribution 1.545 0.538 0.010 1.636 sum 6.803 -20.312 1.250 21.458 Atomic orbital electron populations 1.23862 0.96114 1.01670 1.01991 1.23046 0.96081 0.98650 0.99216 1.20712 0.98762 0.95267 0.98022 1.21414 0.97426 0.95581 0.98704 1.21174 0.89926 0.92045 0.96599 0.90346 1.60712 1.47183 1.05995 1.17644 1.22244 0.97292 0.89134 0.98872 1.21462 0.98737 0.93639 1.00052 1.19533 0.96741 0.93293 0.95449 1.21159 1.12634 0.92094 1.29755 0.91065 1.25040 0.96213 0.96126 0.96188 1.69921 1.38118 1.01012 1.45379 0.86769 0.83665 0.77291 0.81491 1.20301 1.21455 1.19091 1.23088 1.01525 1.02791 0.92652 1.23195 1.03078 0.92343 1.03897 1.22918 1.01263 1.01067 0.96288 0.88366 0.89066 0.88100 0.89793 0.91766 0.92322 0.91874 0.84071 0.95258 0.91555 0.92007 0.93220 0.96873 0.97073 0.92797 0.88075 0.88916 0.87777 0.88554 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 14.32 29.02 0.42 -1.55 16 2 C -0.15 -1.51 9.52 -36.02 -0.34 -1.85 16 3 C -0.09 -0.98 5.54 -27.88 -0.15 -1.13 16 4 C -0.09 -0.95 4.70 -26.73 -0.13 -1.08 16 5 C 0.11 1.29 2.45 -67.72 -0.17 1.12 16 6 H 0.08 0.93 7.78 -51.93 -0.40 0.53 16 7 N -0.68 -9.21 5.55 -106.73 -0.59 -9.80 16 8 C 0.05 0.85 4.62 -3.82 -0.02 0.83 16 9 C -0.10 -2.00 5.36 -26.73 -0.14 -2.14 16 10 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 11 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 12 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 15 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 C -0.18 -1.91 5.79 -90.62 -0.52 -2.44 16 20 C -0.19 -2.16 8.95 -26.73 -0.24 -2.39 16 21 C -0.18 -1.78 9.44 -26.73 -0.25 -2.04 16 22 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 23 H 0.09 0.77 8.06 -52.48 -0.42 0.35 16 24 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 25 H 0.08 1.06 7.40 -51.93 -0.38 0.68 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.67 7.81 -51.93 -0.41 0.27 16 29 H 0.34 4.52 5.68 -39.29 -0.22 4.30 16 30 H 0.03 0.47 6.72 -51.93 -0.35 0.12 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.37 5.12 -51.93 -0.27 1.11 16 40 H 0.10 0.97 7.38 -51.93 -0.38 0.59 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -29.87 325.67 -9.08 -38.95 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.41 Total: 2.72 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -2.09 Total: -26.59 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.18 Total: -37.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.87 -9.08 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125318254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.466 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds