Wall clock time and date at job start Sun Mar 29 2020 22:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99725 * 2 1 4 4 C 1.53001 * 109.47209 * 124.99924 * 3 2 1 5 5 C 1.52999 * 109.47298 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47035 * 305.00063 * 5 4 3 7 7 N 1.46902 * 109.47026 * 64.99957 * 5 4 3 8 8 C 1.46898 * 111.00219 * 210.12458 * 7 5 4 9 9 C 1.53001 * 109.47360 * 184.94535 * 8 7 5 10 10 C 1.52996 * 109.46899 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46826 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99608 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99644 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00675 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46993 * 89.99810 * 15 13 11 17 17 H 1.48497 * 109.47615 * 210.00362 * 15 13 11 18 18 H 1.48506 * 109.46808 * 330.00396 * 15 13 11 19 19 C 1.52991 * 109.47196 * 184.99978 * 5 4 3 20 20 C 1.53004 * 117.51694 * 226.47092 * 19 5 4 21 21 C 1.52999 * 60.00105 * 107.48278 * 20 19 5 22 22 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.00153 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.00221 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47394 * 4.99665 * 3 2 1 26 26 H 1.08999 * 109.47039 * 244.99976 * 3 2 1 27 27 H 1.08997 * 109.47155 * 59.99594 * 4 3 2 28 28 H 1.08999 * 109.47163 * 299.99976 * 4 3 2 29 29 H 1.00900 * 111.00069 * 86.16926 * 7 5 4 30 30 H 1.09004 * 109.47078 * 304.94637 * 8 7 5 31 31 H 1.08999 * 109.46993 * 64.94332 * 8 7 5 32 32 H 1.08997 * 109.46673 * 299.99576 * 9 8 7 33 33 H 1.08998 * 109.46723 * 60.00059 * 9 8 7 34 34 H 1.08998 * 109.47835 * 299.99764 * 10 9 8 35 35 H 1.09005 * 109.47430 * 60.00577 * 10 9 8 36 36 H 0.96998 * 120.00357 * 179.97438 * 14 13 11 37 37 H 1.08998 * 115.55124 * 80.77309 * 19 5 4 38 38 H 1.09004 * 117.49983 * 214.96837 * 20 19 5 39 39 H 1.08996 * 117.49993 * 359.97438 * 20 19 5 40 40 H 1.09003 * 117.49896 * 252.51183 * 21 20 19 41 41 H 1.09003 * 117.50071 * 107.48752 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8003 2.6580 1.1813 6 1 4.2865 2.7965 0.2156 7 7 2.8643 3.7644 1.4214 8 6 3.3219 4.9940 0.7608 9 6 2.3914 6.1499 1.1335 10 6 2.8685 7.4307 0.4460 11 6 1.9515 8.5691 0.8126 12 1 1.1127 8.3965 1.4705 13 6 2.1836 9.8311 0.3080 14 7 1.3837 10.8247 0.6283 15 14 3.6340 10.1297 -0.8306 16 1 3.2110 9.9153 -2.2378 17 1 4.1142 11.5252 -0.6652 18 1 4.7301 9.1859 -0.4939 19 6 4.8582 2.6361 2.2863 20 6 4.9619 3.8662 3.1902 21 6 4.3668 2.5656 3.7335 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1317 0.0895 26 1 2.6212 1.4027 -0.9314 27 1 3.7399 0.5067 1.0921 28 1 2.4772 1.2357 2.1130 29 1 2.7276 3.9143 2.4098 30 1 4.3364 5.2251 1.0857 31 1 3.3100 4.8519 -0.3198 32 1 1.3770 5.9189 0.8085 33 1 2.4034 6.2920 2.2141 34 1 3.8829 7.6616 0.7712 35 1 2.8568 7.2890 -0.6348 36 1 1.5471 11.7126 0.2737 37 1 5.7821 2.1116 2.0423 38 1 5.9539 4.1509 3.5410 39 1 4.2766 4.6915 2.9975 40 1 3.2898 2.5351 3.8984 41 1 4.9674 1.9945 4.4417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125318254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:29 Heat of formation + Delta-G solvation = 4.943554 kcal Electronic energy + Delta-G solvation = -16739.540671 eV Core-core repulsion = 14233.104266 eV Total energy + Delta-G solvation = -2506.436406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23161 -36.57499 -36.40363 -34.83823 -33.32147 -31.53737 -28.46535 -26.64987 -23.94007 -23.53122 -22.81587 -21.90222 -20.66312 -20.09899 -18.92318 -17.71192 -16.68572 -16.29363 -15.97074 -15.72693 -15.35916 -14.89183 -14.60834 -14.38613 -13.85734 -13.75372 -13.45235 -13.07454 -12.89106 -12.68647 -12.49465 -12.30898 -12.14677 -11.80485 -11.78725 -11.71384 -11.50986 -11.39052 -11.24540 -11.15760 -10.76823 -10.75904 -10.10180 -9.27183 -8.29627 -6.33930 1.35663 1.37456 1.49310 1.49671 2.36211 2.87120 3.05698 3.26744 3.74282 3.94853 3.99847 4.16022 4.19133 4.27299 4.32664 4.39599 4.55138 4.66128 4.70928 4.75259 4.76276 4.87098 4.94091 4.97765 5.04770 5.07827 5.12297 5.14807 5.20179 5.24881 5.35635 5.50503 5.53659 5.61662 5.66445 5.84390 6.02800 6.19176 6.30274 6.50825 6.74374 7.30741 8.87510 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.004909 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.677547 B = 5702.975810 C = 6400.707745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.089 4.089 4 C -0.085 4.085 5 C 0.113 3.887 6 H 0.078 0.922 7 N -0.685 5.685 8 C 0.069 3.931 9 C -0.091 4.091 10 C -0.009 4.009 11 C -0.534 4.534 12 H 0.028 0.972 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.246 1.246 19 C -0.176 4.176 20 C -0.203 4.203 21 C -0.167 4.167 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.340 0.660 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -22.923 1.063 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.172 4.172 3 C -0.126 4.126 4 C -0.123 4.123 5 C 0.003 3.997 6 H 0.096 0.904 7 N -0.318 5.318 8 C -0.060 4.060 9 C -0.129 4.129 10 C -0.047 4.047 11 C -0.572 4.572 12 H 0.047 0.953 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.169 1.169 19 C -0.195 4.195 20 C -0.241 4.241 21 C -0.204 4.204 22 H 0.105 0.895 23 H 0.125 0.875 24 H 0.137 0.863 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.403 -22.927 0.527 24.099 hybrid contribution 0.767 1.173 0.304 1.434 sum 8.171 -21.754 0.831 23.253 Atomic orbital electron populations 1.23975 0.96381 1.01947 1.02082 1.23144 0.96116 0.98861 0.99099 1.20664 0.98505 0.95035 0.98440 1.21352 0.97423 0.95374 0.98139 1.21235 0.89921 0.91592 0.96948 0.90429 1.60670 1.48038 1.05458 1.17594 1.21946 0.96224 0.88730 0.99054 1.21277 0.98850 0.93595 0.99221 1.19475 0.95774 0.93301 0.96125 1.21522 1.12400 0.94210 1.29046 0.95326 1.26065 0.99609 0.95674 0.98090 1.70080 1.40495 1.01734 1.47104 0.85605 0.79869 0.77694 0.79149 1.19091 1.20915 1.16933 1.23085 1.01764 1.02175 0.92504 1.23159 1.03102 0.92390 1.05416 1.22965 1.01313 0.99881 0.96276 0.89510 0.87521 0.86288 0.92160 0.91600 0.90389 0.92271 0.83997 0.94827 0.91412 0.93392 0.93792 0.96263 0.96347 0.92497 0.86557 0.88385 0.89830 0.88854 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.15 -2.78 9.52 25.65 0.24 -2.54 16 3 C -0.09 -1.79 5.54 29.85 0.17 -1.63 16 4 C -0.08 -1.54 4.70 30.59 0.14 -1.39 16 5 C 0.11 2.34 2.45 44.91 0.11 2.45 16 6 H 0.08 1.65 7.78 -2.39 -0.02 1.64 16 7 N -0.69 -17.82 5.55 -491.58 -2.73 -20.55 16 8 C 0.07 2.15 4.62 86.30 0.40 2.55 16 9 C -0.09 -3.64 5.36 30.59 0.16 -3.47 16 10 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 11 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 12 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 13 C 0.00 0.12 5.47 84.65 0.46 0.58 16 14 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 15 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 19 C -0.18 -3.27 5.79 -10.79 -0.06 -3.33 16 20 C -0.20 -4.34 8.95 30.60 0.27 -4.06 16 21 C -0.17 -2.97 9.44 30.60 0.29 -2.68 16 22 H 0.09 1.78 7.84 -2.91 -0.02 1.76 16 23 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 24 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 25 H 0.06 1.50 7.40 -2.39 -0.02 1.48 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.14 7.81 -2.39 -0.02 1.12 16 29 H 0.34 8.85 5.68 -89.69 -0.51 8.35 16 30 H 0.03 1.02 6.72 -2.39 -0.02 1.01 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 35 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 36 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.14 5.12 -2.39 -0.01 2.13 16 40 H 0.09 1.72 7.38 -2.39 -0.02 1.70 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.09 325.67 3.38 -61.70 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.40 Total: 20.95 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 3.53 Total: -48.16 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.43 Total: -81.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -65.09 3.38 -61.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125318254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.647 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds