Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 N 1.40090 * 126.03499 * 90.02445 * 3 2 1 5 5 C 1.30836 * 108.20534 * 179.97438 * 4 3 2 6 6 C 1.39870 * 108.20019 * 0.24683 * 5 4 3 7 7 C 1.34942 * 126.03991 * 270.02750 * 3 2 1 8 8 C 1.50696 * 126.12855 * 359.97438 * 7 3 2 9 9 N 1.46898 * 109.47460 * 275.00164 * 8 7 3 10 10 C 1.46895 * 111.00180 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47373 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47708 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47675 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99336 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00157 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99955 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47200 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47269 * 120.00220 * 17 15 13 20 20 H 1.48503 * 109.46975 * 240.00117 * 17 15 13 21 21 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46678 * 299.99417 * 1 2 3 23 23 H 1.08998 * 109.46942 * 59.99983 * 1 2 3 24 24 H 1.09004 * 109.47115 * 240.00426 * 2 1 3 25 25 H 1.09002 * 109.47382 * 120.00180 * 2 1 3 26 26 H 1.08002 * 125.89537 * 179.97438 * 5 4 3 27 27 H 1.07998 * 126.03441 * 179.71717 * 6 5 4 28 28 H 1.09005 * 109.46760 * 35.00467 * 8 7 3 29 29 H 1.08998 * 109.47394 * 154.99715 * 8 7 3 30 30 H 1.00894 * 111.00129 * 303.95323 * 9 8 7 31 31 H 1.09004 * 109.47674 * 300.00444 * 10 9 8 32 32 H 1.09004 * 109.46981 * 60.00216 * 10 9 8 33 33 H 1.08996 * 109.47493 * 300.00678 * 11 10 9 34 34 H 1.09004 * 109.46781 * 60.00228 * 11 10 9 35 35 H 1.09004 * 109.47473 * 300.00660 * 12 11 10 36 36 H 1.09004 * 109.46847 * 60.00227 * 12 11 10 37 37 H 0.97000 * 120.00082 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7090 3.3322 0.7322 6 6 2.7064 3.3428 -0.6664 7 6 2.2825 2.1300 -1.0912 8 6 2.1285 1.6949 -2.5257 9 7 3.3412 0.9858 -2.9553 10 6 3.2266 0.5453 -4.3519 11 6 4.5057 -0.1869 -4.7624 12 6 4.3867 -0.6452 -6.2172 13 6 5.6464 -1.3670 -6.6213 14 1 6.4512 -1.4872 -5.9112 15 6 5.7710 -1.8748 -7.8971 16 7 4.7907 -1.7287 -8.7616 17 14 7.3321 -2.7700 -8.3977 18 1 8.2750 -2.7999 -7.2509 19 1 6.9984 -4.1601 -8.7998 20 1 7.9638 -2.0624 -9.5403 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 2.9992 4.1531 1.3712 27 1 2.9937 4.1719 -1.2961 28 1 1.2687 1.0307 -2.6136 29 1 1.9770 2.5707 -3.1567 30 1 4.1611 1.5585 -2.8225 31 1 2.3745 -0.1270 -4.4522 32 1 3.0825 1.4129 -4.9959 33 1 5.3575 0.4857 -4.6622 34 1 4.6502 -1.0545 -4.1185 35 1 3.5348 -1.3177 -6.3179 36 1 4.2425 0.2226 -6.8608 37 1 4.8785 -2.0856 -9.6593 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125953855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = 56.034553 kcal Electronic energy + Delta-G solvation = -16142.129504 eV Core-core repulsion = 13534.368227 eV Total energy + Delta-G solvation = -2607.761277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26839 -36.56312 -34.55424 -33.66277 -31.84650 -30.04658 -29.40673 -26.76313 -24.64038 -23.74728 -22.25069 -21.09310 -20.36495 -19.47862 -16.97514 -16.28705 -15.52720 -15.40608 -14.79132 -14.57186 -14.31602 -14.03392 -13.74718 -13.46903 -13.21897 -12.60647 -12.35001 -12.23955 -11.73262 -11.65610 -11.45691 -11.44639 -10.88958 -10.65905 -10.61370 -10.49961 -9.73697 -9.47744 -9.27881 -9.06338 -8.60404 -8.36113 -8.30681 -6.00930 -4.02950 1.81141 2.47856 2.78987 3.30783 3.38312 3.42911 4.31646 4.46741 4.49381 4.64110 4.84452 4.93573 5.03951 5.12921 5.35168 5.38168 5.45769 5.52669 5.63884 5.69955 5.75857 5.82033 5.85375 6.10923 6.25113 6.62626 6.64714 6.68146 6.98624 7.09296 7.19597 7.48080 7.66874 7.70741 7.80757 7.99298 8.42549 9.04452 9.61316 11.10551 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.003715 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.933048 B = 7536.153955 C = 7716.292599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 N -0.355 5.355 4 N -0.302 5.302 5 C 0.042 3.958 6 C -0.276 4.276 7 C 0.098 3.902 8 C 0.116 3.884 9 N -0.688 5.688 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.180 0.820 27 H 0.144 0.856 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.344 0.656 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 7.645 15.783 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.004 3.996 3 N -0.138 5.138 4 N -0.123 5.123 5 C -0.143 4.143 6 C -0.306 4.306 7 C -0.031 4.031 8 C -0.015 4.015 9 N -0.320 5.320 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.197 0.803 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.524 6.097 16.874 19.864 hybrid contribution 1.108 0.911 -1.553 2.114 sum -7.416 7.009 15.321 18.408 Atomic orbital electron populations 1.22182 0.94545 1.03092 1.02850 1.21739 0.94835 0.77970 1.05101 1.48637 1.50207 1.11865 1.03049 1.77315 1.22191 1.04395 1.08441 1.23755 0.99772 0.95790 0.94989 1.21258 1.15510 0.98725 0.95146 1.21027 0.99805 0.91837 0.90436 1.20502 0.95246 0.97859 0.87848 1.60587 1.03631 1.44135 1.23622 1.22169 1.00924 0.98472 0.85334 1.21625 0.94036 0.98821 1.00001 1.19073 0.97205 0.96194 0.89121 1.21291 1.01840 1.35435 0.97137 0.92611 1.25028 0.96462 0.96322 0.96713 1.69972 1.31861 1.46400 1.05369 0.86540 0.83515 0.79469 0.78519 1.19714 1.21013 1.21028 0.90423 0.91942 0.92101 0.87777 0.88970 0.80309 0.83850 0.89977 0.92590 0.83809 0.91324 0.95348 0.93531 0.92561 0.96563 0.96739 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.12 1.27 6.85 -4.04 -0.03 1.25 16 3 N -0.35 -4.50 3.61 -57.14 -0.21 -4.71 16 4 N -0.30 -4.12 12.58 30.62 0.39 -3.73 16 5 C 0.04 0.49 12.03 -17.37 -0.21 0.28 16 6 C -0.28 -3.23 10.72 -40.01 -0.43 -3.66 16 7 C 0.10 1.21 6.44 -82.27 -0.53 0.68 16 8 C 0.12 1.37 5.62 -4.98 -0.03 1.34 16 9 N -0.69 -9.53 6.49 -115.06 -0.75 -10.28 16 10 C 0.06 0.96 5.69 -3.83 -0.02 0.94 16 11 C -0.11 -2.15 5.41 -26.73 -0.14 -2.30 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.10 1.08 7.78 -51.93 -0.40 0.67 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.34 4.71 8.72 -39.30 -0.34 4.37 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -31.53 315.57 -7.85 -39.39 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.20 Total: -0.29 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.56 Total: -15.62 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.17 Total: -44.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.53 -7.85 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125953855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.422 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds