Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 N 1.40090 * 126.03499 * 90.02445 * 3 2 1 5 5 C 1.30836 * 108.20534 * 179.97438 * 4 3 2 6 6 C 1.39870 * 108.20019 * 0.24683 * 5 4 3 7 7 C 1.34942 * 126.03991 * 270.02750 * 3 2 1 8 8 C 1.50696 * 126.12855 * 359.97438 * 7 3 2 9 9 N 1.46898 * 109.47460 * 275.00164 * 8 7 3 10 10 C 1.46895 * 111.00180 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47373 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47708 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47675 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99336 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00157 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99955 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47200 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47269 * 120.00220 * 17 15 13 20 20 H 1.48503 * 109.46975 * 240.00117 * 17 15 13 21 21 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46678 * 299.99417 * 1 2 3 23 23 H 1.08998 * 109.46942 * 59.99983 * 1 2 3 24 24 H 1.09004 * 109.47115 * 240.00426 * 2 1 3 25 25 H 1.09002 * 109.47382 * 120.00180 * 2 1 3 26 26 H 1.08002 * 125.89537 * 179.97438 * 5 4 3 27 27 H 1.07998 * 126.03441 * 179.71717 * 6 5 4 28 28 H 1.09005 * 109.46760 * 35.00467 * 8 7 3 29 29 H 1.08998 * 109.47394 * 154.99715 * 8 7 3 30 30 H 1.00894 * 111.00129 * 303.95323 * 9 8 7 31 31 H 1.09004 * 109.47674 * 300.00444 * 10 9 8 32 32 H 1.09004 * 109.46981 * 60.00216 * 10 9 8 33 33 H 1.08996 * 109.47493 * 300.00678 * 11 10 9 34 34 H 1.09004 * 109.46781 * 60.00228 * 11 10 9 35 35 H 1.09004 * 109.47473 * 300.00660 * 12 11 10 36 36 H 1.09004 * 109.46847 * 60.00227 * 12 11 10 37 37 H 0.97000 * 120.00082 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7090 3.3322 0.7322 6 6 2.7064 3.3428 -0.6664 7 6 2.2825 2.1300 -1.0912 8 6 2.1285 1.6949 -2.5257 9 7 3.3412 0.9858 -2.9553 10 6 3.2266 0.5453 -4.3519 11 6 4.5057 -0.1869 -4.7624 12 6 4.3867 -0.6452 -6.2172 13 6 5.6464 -1.3670 -6.6213 14 1 6.4512 -1.4872 -5.9112 15 6 5.7710 -1.8748 -7.8971 16 7 4.7907 -1.7287 -8.7616 17 14 7.3321 -2.7700 -8.3977 18 1 8.2750 -2.7999 -7.2509 19 1 6.9984 -4.1601 -8.7998 20 1 7.9638 -2.0624 -9.5403 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 2.9992 4.1531 1.3712 27 1 2.9937 4.1719 -1.2961 28 1 1.2687 1.0307 -2.6136 29 1 1.9770 2.5707 -3.1567 30 1 4.1611 1.5585 -2.8225 31 1 2.3745 -0.1270 -4.4522 32 1 3.0825 1.4129 -4.9959 33 1 5.3575 0.4857 -4.6622 34 1 4.6502 -1.0545 -4.1185 35 1 3.5348 -1.3177 -6.3179 36 1 4.2425 0.2226 -6.8608 37 1 4.8785 -2.0856 -9.6593 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125953855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = 35.647707 kcal Electronic energy + Delta-G solvation = -16143.013544 eV Core-core repulsion = 13534.368227 eV Total energy + Delta-G solvation = -2608.645317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16314 -37.83423 -35.62813 -35.26893 -33.50609 -31.33685 -30.24351 -28.36535 -26.03948 -24.60224 -23.81045 -22.01221 -21.96813 -20.45503 -18.50052 -17.86568 -16.68373 -16.58276 -16.29642 -15.73866 -15.33809 -15.22082 -14.96293 -14.55355 -14.27030 -14.08930 -13.53942 -13.38062 -13.20148 -12.98827 -12.76295 -12.61719 -12.42258 -12.23830 -12.20321 -11.61463 -11.48565 -11.38861 -11.11527 -10.54722 -10.26572 -9.55411 -9.38483 -8.19711 -6.30134 0.88841 1.40534 1.41073 1.54316 1.64128 1.90729 2.41696 3.13773 3.25004 3.67562 3.69234 4.09583 4.12289 4.19854 4.26832 4.38861 4.40927 4.52422 4.70521 4.74149 4.76440 4.85745 4.93838 4.99585 5.10537 5.15585 5.22295 5.26541 5.53268 5.76812 5.78894 5.87395 5.93430 6.13927 6.27830 6.35977 6.80762 6.87178 7.39174 8.92255 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.003715 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.933048 B = 7536.153955 C = 7716.292599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 N -0.363 5.363 4 N -0.333 5.333 5 C 0.039 3.961 6 C -0.281 4.281 7 C 0.086 3.914 8 C 0.122 3.878 9 N -0.688 5.688 10 C 0.074 3.926 11 C -0.093 4.093 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.057 0.943 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.208 0.792 27 H 0.161 0.839 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.346 0.654 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.051 0.949 35 H -0.006 1.006 36 H -0.007 1.007 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 7.899 16.396 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.146 5.146 4 N -0.155 5.155 5 C -0.145 4.145 6 C -0.311 4.311 7 C -0.043 4.043 8 C -0.008 4.008 9 N -0.320 5.320 10 C -0.054 4.054 11 C -0.131 4.131 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.203 1.203 21 H 0.115 0.885 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.225 0.775 27 H 0.179 0.821 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.053 6.355 17.508 20.292 hybrid contribution 0.938 0.862 -1.720 2.140 sum -7.115 7.217 15.788 18.761 Atomic orbital electron populations 1.22120 0.93209 1.04197 1.02262 1.21888 0.95934 0.77216 1.05101 1.48865 1.50334 1.12462 1.02936 1.77274 1.23410 1.05432 1.09383 1.24298 0.98738 0.95928 0.95547 1.21578 1.14992 0.99039 0.95512 1.21177 1.00308 0.92315 0.90509 1.20489 0.94271 0.98289 0.87776 1.60475 1.04742 1.45047 1.21721 1.21849 0.98587 0.98185 0.86824 1.21368 0.96322 0.99044 0.96357 1.18979 0.95458 0.94667 0.92211 1.21736 1.02852 1.35869 0.97603 0.92429 1.25954 0.99963 0.97125 0.96746 1.70091 1.33999 1.47375 1.05856 0.85423 0.79278 0.78155 0.78344 1.18751 1.20354 1.20327 0.88481 0.92712 0.92369 0.88006 0.88695 0.77504 0.82140 0.89336 0.91307 0.83543 0.91272 0.95081 0.93275 0.93035 0.98764 0.98851 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 71.98 0.74 -1.78 16 2 C 0.12 2.33 6.85 86.38 0.59 2.92 16 3 N -0.36 -8.84 3.61 -334.69 -1.21 -10.05 16 4 N -0.33 -8.74 12.58 -57.02 -0.72 -9.45 16 5 C 0.04 0.85 12.03 85.24 1.03 1.88 16 6 C -0.28 -6.05 10.72 21.99 0.24 -5.82 16 7 C 0.09 1.99 6.44 41.40 0.27 2.26 16 8 C 0.12 2.65 5.62 85.56 0.48 3.13 16 9 N -0.69 -18.01 6.49 -517.95 -3.36 -21.37 16 10 C 0.07 2.34 5.69 86.30 0.49 2.83 16 11 C -0.09 -3.72 5.41 30.59 0.17 -3.55 16 12 C 0.02 1.27 4.97 29.85 0.15 1.42 16 13 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 17 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 2.02 7.78 -2.38 -0.02 2.00 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.21 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.09 1.82 7.98 -2.38 -0.02 1.80 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.35 8.90 8.72 -89.70 -0.78 8.12 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -66.88 315.57 2.11 -64.78 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.25 Total: 12.96 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.84 Total: -26.93 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -5.00 Total: -97.06 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.88 2.11 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125953855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.425 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds