Wall clock time and date at job start Sun Mar 29 2020 22:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46967 * 2 1 4 4 C 1.52998 * 109.47418 * 240.00452 * 2 1 3 5 5 C 1.50702 * 109.47265 * 59.99637 * 4 2 1 6 6 H 1.07994 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99671 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99612 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47164 * 89.99801 * 9 7 5 11 11 H 1.48503 * 109.47016 * 209.99986 * 9 7 5 12 12 H 1.48498 * 109.47222 * 329.99640 * 9 7 5 13 13 C 1.52996 * 109.47139 * 119.99899 * 2 1 3 14 14 N 1.46895 * 109.47033 * 300.00122 * 13 2 1 15 15 C 1.46908 * 110.99782 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.64180 * 325.00214 * 15 14 13 17 17 C 1.53018 * 109.81461 * 85.53183 * 15 14 13 18 18 C 1.50075 * 110.14678 * 169.22264 * 17 15 14 19 19 C 1.29439 * 124.07516 * 342.86839 * 18 17 15 20 20 C 1.50072 * 124.07282 * 0.47139 * 19 18 17 21 21 C 1.53023 * 110.15017 * 342.86277 * 20 19 18 22 22 H 1.08990 * 109.47597 * 300.00009 * 1 2 3 23 23 H 1.09004 * 109.47450 * 60.00294 * 1 2 3 24 24 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47322 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47494 * 300.00157 * 3 2 1 27 27 H 1.09006 * 109.47080 * 59.99944 * 3 2 1 28 28 H 1.08996 * 109.47619 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47114 * 299.99570 * 4 2 1 30 30 H 0.97006 * 120.00026 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47234 * 180.02562 * 13 2 1 32 32 H 1.09001 * 109.47017 * 60.00661 * 13 2 1 33 33 H 1.00893 * 111.00308 * 303.95433 * 14 13 2 34 34 H 1.09002 * 109.36206 * 289.42636 * 17 15 14 35 35 H 1.09002 * 109.36334 * 49.01617 * 17 15 14 36 36 H 1.07998 * 117.96015 * 162.88947 * 18 17 15 37 37 H 1.07997 * 117.95936 * 180.49079 * 19 18 17 38 38 H 1.09006 * 109.35487 * 222.66031 * 20 19 18 39 39 H 1.08996 * 109.35517 * 103.07735 * 20 19 18 40 40 H 1.08997 * 109.64084 * 289.75731 * 21 20 19 41 41 H 1.08997 * 109.64035 * 169.11742 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5512 -3.8526 9 14 1.2484 0.3989 -5.2572 10 1 2.2272 1.4399 -5.6613 11 1 1.0826 -0.5801 -6.3614 12 1 -0.0594 1.0373 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4486 15 6 2.0208 -0.6952 3.6703 16 1 2.0610 -1.7723 3.5078 17 6 3.4130 -0.1785 4.0397 18 6 3.7914 -0.6496 5.4134 19 6 2.9468 -1.1041 6.2826 20 6 1.4723 -1.2330 6.0344 21 6 1.0645 -0.3838 4.8285 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7215 -1.2491 29 1 1.6768 -1.7488 -1.2493 30 1 2.8610 -1.8826 -4.7337 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 1.8196 0.9436 2.4401 34 1 4.1398 -0.5501 3.3174 35 1 3.4111 0.9113 4.0193 36 1 4.8333 -0.6064 5.6944 37 1 3.3267 -1.4093 7.2463 38 1 0.9268 -0.8949 6.9154 39 1 1.2287 -2.2774 5.8398 40 1 1.1320 0.6734 5.0853 41 1 0.0434 -0.6287 4.5365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126921607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:57 Heat of formation + Delta-G solvation = -15.730592 kcal Electronic energy + Delta-G solvation = -17238.361998 eV Core-core repulsion = 14731.029094 eV Total energy + Delta-G solvation = -2507.332904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.02216 -37.03784 -33.82825 -32.13104 -30.83832 -28.88370 -26.82403 -26.29521 -25.01102 -23.24637 -22.33815 -21.26898 -18.31656 -17.52581 -16.30071 -16.18944 -14.84817 -14.66188 -14.37247 -14.18163 -13.65762 -13.30160 -13.12237 -12.79426 -12.51935 -12.24256 -12.19760 -11.96218 -11.79079 -11.01603 -10.90524 -10.84235 -10.73920 -10.69313 -10.48842 -10.38495 -10.20815 -10.06102 -9.65195 -9.08408 -8.97725 -8.79390 -8.29564 -7.99292 -5.94100 -3.94101 2.19743 3.34706 3.41307 3.44385 4.37480 4.51974 4.74214 4.80682 5.01690 5.22013 5.27571 5.41740 5.47527 5.51878 5.63381 5.75936 5.79719 5.84378 5.85183 5.95159 6.01715 6.23085 6.28289 6.33503 6.37209 6.55039 6.56061 6.69947 6.82846 6.85654 6.86397 7.24230 7.28322 7.29941 7.46907 7.71891 7.76255 7.88954 8.06461 8.51085 9.11389 9.68610 11.17608 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053270 B = 0.004552 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.493794 B = 6149.076861 C = 6293.765131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.681 5.681 15 C 0.087 3.913 16 H 0.076 0.924 17 C -0.122 4.122 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.091 4.091 21 C -0.107 4.107 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 2.312 17.707 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.311 5.311 15 C -0.024 4.024 16 H 0.095 0.905 17 C -0.160 4.160 18 C -0.167 4.167 19 C -0.178 4.178 20 C -0.128 4.128 21 C -0.145 4.145 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.904 1.874 17.554 17.677 hybrid contribution 0.939 0.589 -0.894 1.424 sum 0.035 2.463 16.660 16.841 Atomic orbital electron populations 1.21596 0.95036 1.00552 1.00136 1.20629 0.95843 0.94971 0.94472 1.21770 0.99656 0.96807 1.00382 1.19123 0.95856 0.95203 0.90218 1.21247 1.30717 1.11873 0.90630 0.92296 1.25015 0.95436 0.95104 0.99041 1.69968 1.37368 1.23209 1.23251 0.86668 0.79242 0.79415 0.83125 1.20845 1.21381 1.19903 1.22130 0.96356 0.97999 0.89378 1.60687 1.63133 1.06307 1.01007 1.21622 0.91339 0.98970 0.90437 0.90549 1.21241 0.99027 1.00869 0.94910 1.22006 0.98962 1.00217 0.95564 1.22058 0.95640 1.01171 0.98931 1.20467 0.93259 1.00605 0.98499 1.21587 0.99785 0.99570 0.93577 0.93875 0.92753 0.94210 0.94146 0.91766 0.94811 0.96967 0.96708 0.93191 0.95909 0.91687 0.84277 0.91125 0.90909 0.88361 0.88304 0.91237 0.90961 0.92150 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.22 4.45 -3.83 -0.02 1.20 16 14 N -0.68 -9.91 5.48 -106.49 -0.58 -10.50 16 15 C 0.09 1.10 2.51 -67.49 -0.17 0.93 16 16 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 17 C -0.12 -1.42 5.44 -28.18 -0.15 -1.58 16 18 C -0.15 -1.58 9.80 -35.90 -0.35 -1.93 16 19 C -0.16 -1.58 9.80 -35.90 -0.35 -1.93 16 20 C -0.09 -0.87 6.11 -28.17 -0.17 -1.04 16 21 C -0.11 -1.18 5.63 -26.51 -0.15 -1.33 16 22 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 23 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 27 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.02 0.40 7.73 -51.93 -0.40 0.00 16 32 H 0.06 1.18 8.06 -51.93 -0.42 0.77 16 33 H 0.34 4.74 6.38 -39.30 -0.25 4.49 16 34 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 35 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 36 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -28.80 315.40 -8.83 -37.63 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.38 Total: 0.79 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.34 Total: -23.06 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.15 Total: -36.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.80 -8.83 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126921607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.897 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds