Wall clock time and date at job start Sun Mar 29 2020 22:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46967 * 2 1 4 4 C 1.52998 * 109.47418 * 240.00452 * 2 1 3 5 5 C 1.50702 * 109.47265 * 59.99637 * 4 2 1 6 6 H 1.07994 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99671 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99612 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47164 * 89.99801 * 9 7 5 11 11 H 1.48503 * 109.47016 * 209.99986 * 9 7 5 12 12 H 1.48498 * 109.47222 * 329.99640 * 9 7 5 13 13 C 1.52996 * 109.47139 * 119.99899 * 2 1 3 14 14 N 1.46895 * 109.47033 * 300.00122 * 13 2 1 15 15 C 1.46908 * 110.99782 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.64180 * 325.00214 * 15 14 13 17 17 C 1.53018 * 109.81461 * 85.53183 * 15 14 13 18 18 C 1.50075 * 110.14678 * 169.22264 * 17 15 14 19 19 C 1.29439 * 124.07516 * 342.86839 * 18 17 15 20 20 C 1.50072 * 124.07282 * 0.47139 * 19 18 17 21 21 C 1.53023 * 110.15017 * 342.86277 * 20 19 18 22 22 H 1.08990 * 109.47597 * 300.00009 * 1 2 3 23 23 H 1.09004 * 109.47450 * 60.00294 * 1 2 3 24 24 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47322 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47494 * 300.00157 * 3 2 1 27 27 H 1.09006 * 109.47080 * 59.99944 * 3 2 1 28 28 H 1.08996 * 109.47619 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47114 * 299.99570 * 4 2 1 30 30 H 0.97006 * 120.00026 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47234 * 180.02562 * 13 2 1 32 32 H 1.09001 * 109.47017 * 60.00661 * 13 2 1 33 33 H 1.00893 * 111.00308 * 303.95433 * 14 13 2 34 34 H 1.09002 * 109.36206 * 289.42636 * 17 15 14 35 35 H 1.09002 * 109.36334 * 49.01617 * 17 15 14 36 36 H 1.07998 * 117.96015 * 162.88947 * 18 17 15 37 37 H 1.07997 * 117.95936 * 180.49079 * 19 18 17 38 38 H 1.09006 * 109.35487 * 222.66031 * 20 19 18 39 39 H 1.08996 * 109.35517 * 103.07735 * 20 19 18 40 40 H 1.08997 * 109.64084 * 289.75731 * 21 20 19 41 41 H 1.08997 * 109.64035 * 169.11742 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5512 -3.8526 9 14 1.2484 0.3989 -5.2572 10 1 2.2272 1.4399 -5.6613 11 1 1.0826 -0.5801 -6.3614 12 1 -0.0594 1.0373 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4486 15 6 2.0208 -0.6952 3.6703 16 1 2.0610 -1.7723 3.5078 17 6 3.4130 -0.1785 4.0397 18 6 3.7914 -0.6496 5.4134 19 6 2.9468 -1.1041 6.2826 20 6 1.4723 -1.2330 6.0344 21 6 1.0645 -0.3838 4.8285 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7215 -1.2491 29 1 1.6768 -1.7488 -1.2493 30 1 2.8610 -1.8826 -4.7337 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 1.8196 0.9436 2.4401 34 1 4.1398 -0.5501 3.3174 35 1 3.4111 0.9113 4.0193 36 1 4.8333 -0.6064 5.6944 37 1 3.3267 -1.4093 7.2463 38 1 0.9268 -0.8949 6.9154 39 1 1.2287 -2.2774 5.8398 40 1 1.1320 0.6734 5.0853 41 1 0.0434 -0.6287 4.5365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126921607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:57 Heat of formation + Delta-G solvation = -31.389747 kcal Electronic energy + Delta-G solvation = -17239.041030 eV Core-core repulsion = 14731.029094 eV Total energy + Delta-G solvation = -2508.011936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09107 -38.48939 -35.29633 -34.00983 -31.67071 -30.12607 -28.71870 -27.88424 -26.54825 -24.55902 -23.74616 -22.32555 -19.69239 -18.69957 -18.31734 -17.24818 -16.53930 -15.95470 -15.72994 -15.49377 -14.79848 -14.69290 -14.45652 -14.08069 -13.87684 -13.81154 -13.45687 -13.12797 -13.10271 -12.81201 -12.69439 -12.49184 -12.24925 -12.16548 -11.94200 -11.73805 -11.57183 -11.43791 -11.25017 -10.85102 -10.66733 -10.50269 -9.87559 -9.21121 -8.13665 -6.20842 1.41213 1.41720 1.41896 1.52669 2.44180 3.20268 3.25838 3.84936 3.93608 4.07284 4.18476 4.23366 4.37249 4.39959 4.46839 4.58870 4.68896 4.71411 4.80008 4.87826 4.93516 4.96968 5.06447 5.08824 5.09122 5.22293 5.23112 5.37538 5.41495 5.52293 5.54400 5.59284 5.66978 5.76461 5.88153 5.93233 6.06064 6.16202 6.37880 6.58168 6.94388 7.46597 8.98801 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053270 B = 0.004552 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.493794 B = 6149.076861 C = 6293.765131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.084 3.916 14 N -0.676 5.676 15 C 0.086 3.914 16 H 0.063 0.937 17 C -0.118 4.118 18 C -0.165 4.165 19 C -0.155 4.155 20 C -0.091 4.091 21 C -0.102 4.102 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.068 0.932 28 H -0.017 1.017 29 H -0.017 1.017 30 H 0.260 0.740 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.344 0.656 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 3.698 19.218 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.045 4.045 14 N -0.307 5.307 15 C -0.024 4.024 16 H 0.081 0.919 17 C -0.157 4.157 18 C -0.184 4.184 19 C -0.173 4.173 20 C -0.128 4.128 21 C -0.140 4.140 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.748 3.275 19.086 19.444 hybrid contribution 1.207 0.115 -1.307 1.783 sum -0.540 3.390 17.779 18.107 Atomic orbital electron populations 1.21500 0.94281 1.00050 1.00560 1.20500 0.96325 0.95637 0.93140 1.21684 0.99414 0.95582 1.01237 1.19010 0.93895 0.94072 0.92823 1.21626 1.30248 1.11925 0.91440 0.91545 1.25928 0.95703 0.95876 1.02604 1.70113 1.38914 1.24963 1.24026 0.85567 0.79131 0.78225 0.78878 1.20040 1.21263 1.18652 1.21811 0.95761 0.97284 0.89691 1.60644 1.63006 1.06491 1.00529 1.21664 0.92624 0.98049 0.90081 0.91882 1.21153 0.97878 1.01110 0.95521 1.22046 0.99806 1.01468 0.95089 1.22277 0.95674 0.99913 0.99439 1.20508 0.93351 1.00501 0.98484 1.21539 0.98950 1.00187 0.93313 0.91269 0.94289 0.95207 0.94522 0.93409 0.91345 0.99881 0.99900 0.93176 0.96597 0.92928 0.83605 0.92507 0.90429 0.87414 0.86510 0.89320 0.90737 0.91664 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 2 C -0.06 -2.24 0.60 -52.18 -0.03 -2.27 16 3 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.51 -28.76 7.65 25.60 0.20 -28.57 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.08 2.93 4.45 86.30 0.38 3.32 16 14 N -0.68 -18.72 5.48 -490.84 -2.69 -21.40 16 15 C 0.09 2.06 2.51 45.05 0.11 2.18 16 16 H 0.06 1.69 7.79 -2.39 -0.02 1.67 16 17 C -0.12 -2.62 5.44 29.66 0.16 -2.46 16 18 C -0.17 -3.21 9.80 27.04 0.27 -2.95 16 19 C -0.16 -2.67 9.80 27.04 0.27 -2.40 16 20 C -0.09 -1.50 6.11 29.66 0.18 -1.32 16 21 C -0.10 -2.02 5.63 30.74 0.17 -1.85 16 22 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 23 H 0.04 1.60 6.62 -2.38 -0.02 1.58 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 27 H 0.07 2.00 6.57 -2.38 -0.02 1.98 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 31 H 0.02 0.57 7.73 -2.39 -0.02 0.55 16 32 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 33 H 0.34 8.85 6.38 -89.70 -0.57 8.28 16 34 H 0.06 1.40 7.81 -2.39 -0.02 1.38 16 35 H 0.08 1.63 7.92 -2.39 -0.02 1.61 16 36 H 0.11 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.46 315.40 3.46 -59.00 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.40 Total: 14.63 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.44 Total: -41.28 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.40 Total: -79.11 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.46 3.46 -59.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126921607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.610 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds