Wall clock time and date at job start Sun Mar 29 2020 22:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47018 * 2 1 4 4 C 1.52999 * 109.46935 * 240.00258 * 2 1 3 5 5 C 1.50702 * 109.47470 * 60.00124 * 4 2 1 6 6 H 1.08004 * 119.99786 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99698 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47714 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47250 * 120.00102 * 9 7 5 12 12 H 1.48505 * 109.47159 * 239.99447 * 9 7 5 13 13 C 1.52996 * 109.46926 * 120.00475 * 2 1 3 14 14 N 1.46899 * 109.47014 * 299.99552 * 13 2 1 15 15 C 1.46900 * 111.00130 * 179.97438 * 14 13 2 16 16 H 1.09004 * 109.63817 * 34.58237 * 15 14 13 17 17 C 1.53018 * 109.64344 * 273.94496 * 15 14 13 18 18 C 1.50072 * 110.09204 * 190.68513 * 17 15 14 19 19 C 1.29443 * 124.07412 * 17.59192 * 18 17 15 20 20 C 1.50070 * 124.07366 * 359.00582 * 19 18 17 21 21 C 1.53031 * 110.14643 * 17.39440 * 20 19 18 22 22 H 1.09004 * 109.47082 * 299.99858 * 1 2 3 23 23 H 1.09004 * 109.46953 * 59.99503 * 1 2 3 24 24 H 1.08992 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46934 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47643 * 300.00178 * 3 2 1 27 27 H 1.08996 * 109.47141 * 60.00494 * 3 2 1 28 28 H 1.08999 * 109.47230 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47095 * 299.99799 * 4 2 1 30 30 H 0.97002 * 120.00330 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46899 * 179.97438 * 13 2 1 32 32 H 1.09003 * 109.47487 * 59.99369 * 13 2 1 33 33 H 1.00897 * 111.00358 * 303.95421 * 14 13 2 34 34 H 1.08997 * 109.36158 * 311.08642 * 17 15 14 35 35 H 1.09002 * 109.36095 * 70.81207 * 17 15 14 36 36 H 1.08005 * 117.96869 * 197.35042 * 18 17 15 37 37 H 1.08002 * 117.96781 * 179.29694 * 19 18 17 38 38 H 1.08997 * 109.35957 * 137.60317 * 20 19 18 39 39 H 1.08999 * 109.36090 * 257.18937 * 20 19 18 40 40 H 1.08996 * 109.63819 * 70.24884 * 21 20 19 41 41 H 1.09001 * 109.63955 * 190.88160 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7321 8 7 2.6263 -1.5513 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 0.4237 1.5661 -4.8530 11 1 2.4035 0.8648 -6.0656 12 1 0.4225 -0.5337 -6.0655 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0208 -0.6954 3.6702 16 1 3.0198 -1.0994 3.5056 17 6 1.0589 -1.8257 4.0425 18 6 1.3767 -2.3419 5.4154 19 6 2.0893 -1.6999 6.2846 20 6 2.7150 -0.3592 6.0334 21 6 2.0562 0.3122 4.8264 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1300 -0.7216 -1.2491 29 1 1.6767 -1.7489 -1.2493 30 1 2.8607 -1.8828 -4.7337 31 1 3.1300 -0.7217 1.2489 32 1 1.6766 -1.7490 1.2492 33 1 1.8198 0.9434 2.4402 34 1 0.0356 -1.4508 4.0218 35 1 1.1606 -2.6384 3.3233 36 1 0.9833 -3.3075 5.6971 37 1 2.2471 -2.1596 7.2491 38 1 2.5846 0.2709 6.9132 39 1 3.7797 -0.4881 5.8386 40 1 1.0400 0.6112 5.0830 41 1 2.6358 1.1872 4.5322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126921845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:59 Heat of formation + Delta-G solvation = -15.194143 kcal Electronic energy + Delta-G solvation = -17234.794713 eV Core-core repulsion = 14727.485072 eV Total energy + Delta-G solvation = -2507.309642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.96649 -37.04323 -33.81343 -32.12993 -30.84556 -28.92832 -26.82331 -26.30201 -25.10125 -23.23092 -22.30376 -21.16264 -18.05383 -17.61262 -16.28108 -16.19742 -15.25581 -14.66992 -14.34851 -13.95148 -13.64139 -13.28969 -13.07085 -12.68106 -12.50952 -12.41831 -12.22992 -11.97058 -11.79374 -11.10781 -10.91900 -10.82790 -10.70326 -10.56088 -10.47986 -10.37955 -10.15804 -10.03911 -9.65014 -9.02484 -8.97609 -8.78215 -8.29920 -8.03847 -5.94216 -3.94143 2.24237 3.33775 3.41618 3.45221 4.35070 4.51775 4.67379 4.77516 5.07334 5.27905 5.30310 5.41724 5.51298 5.54040 5.62374 5.71175 5.78472 5.83224 5.95363 6.01608 6.05017 6.12207 6.24128 6.34015 6.40967 6.54870 6.61766 6.70151 6.83274 6.86309 6.90557 7.24427 7.28595 7.30032 7.47401 7.72147 7.76396 7.89049 8.06483 8.51133 9.11594 9.68637 11.17563 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053205 B = 0.004553 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.143309 B = 6147.663752 C = 6295.742732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.684 5.684 15 C 0.086 3.914 16 H 0.042 0.958 17 C -0.081 4.081 18 C -0.146 4.146 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.121 4.121 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.339 0.661 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 2.022 17.768 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.316 5.316 15 C -0.024 4.024 16 H 0.060 0.940 17 C -0.119 4.119 18 C -0.164 4.164 19 C -0.186 4.186 20 C -0.125 4.125 21 C -0.158 4.158 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.492 1.592 17.631 17.765 hybrid contribution 0.734 0.444 -0.916 1.255 sum -0.758 2.036 16.715 16.856 Atomic orbital electron populations 1.21595 0.95027 1.00533 1.00130 1.20626 0.95847 0.94970 0.94452 1.21766 0.99650 0.96811 1.00391 1.19130 0.95869 0.95207 0.90241 1.21287 1.30596 1.11884 0.90613 0.92234 1.25017 0.95434 0.95122 0.99056 1.69977 1.37408 1.23264 1.23144 0.86613 0.78585 0.79754 0.83516 1.19767 1.21209 1.21167 1.22142 0.96148 0.98132 0.89378 1.60572 1.63825 1.06177 1.00994 1.21523 0.96332 0.94573 0.89934 0.93991 1.20465 1.00363 0.97632 0.93442 1.22167 0.99065 0.99356 0.95851 1.21994 1.00355 0.97132 0.99091 1.20411 0.99550 0.94356 0.98155 1.21792 1.01531 0.97687 0.94837 0.93872 0.92765 0.94221 0.94158 0.91745 0.94802 0.96963 0.96709 0.93248 0.95999 0.91665 0.84165 0.89848 0.91231 0.88118 0.88329 0.91231 0.91182 0.91028 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.93 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.24 4.45 -3.83 -0.02 1.23 16 14 N -0.68 -10.02 5.53 -106.50 -0.59 -10.60 16 15 C 0.09 1.11 2.54 -67.50 -0.17 0.94 16 16 H 0.04 0.58 7.79 -51.93 -0.40 0.18 16 17 C -0.08 -1.01 5.59 -28.18 -0.16 -1.17 16 18 C -0.15 -1.59 9.80 -35.90 -0.35 -1.94 16 19 C -0.17 -1.68 9.80 -35.90 -0.35 -2.03 16 20 C -0.09 -0.83 6.12 -28.17 -0.17 -1.00 16 21 C -0.12 -1.29 5.36 -26.51 -0.14 -1.43 16 22 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 23 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 27 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.06 1.19 7.76 -51.93 -0.40 0.79 16 33 H 0.34 4.75 6.32 -39.29 -0.25 4.50 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 36 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -28.92 315.43 -8.84 -37.76 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.38 Total: 0.50 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.34 Total: -22.79 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.15 Total: -36.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.92 -8.84 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126921845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.567 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds