Wall clock time and date at job start Sun Mar 29 2020 22:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47018 * 2 1 4 4 C 1.52999 * 109.46935 * 240.00258 * 2 1 3 5 5 C 1.50702 * 109.47470 * 60.00124 * 4 2 1 6 6 H 1.08004 * 119.99786 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99698 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47714 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47250 * 120.00102 * 9 7 5 12 12 H 1.48505 * 109.47159 * 239.99447 * 9 7 5 13 13 C 1.52996 * 109.46926 * 120.00475 * 2 1 3 14 14 N 1.46899 * 109.47014 * 299.99552 * 13 2 1 15 15 C 1.46900 * 111.00130 * 179.97438 * 14 13 2 16 16 H 1.09004 * 109.63817 * 34.58237 * 15 14 13 17 17 C 1.53018 * 109.64344 * 273.94496 * 15 14 13 18 18 C 1.50072 * 110.09204 * 190.68513 * 17 15 14 19 19 C 1.29443 * 124.07412 * 17.59192 * 18 17 15 20 20 C 1.50070 * 124.07366 * 359.00582 * 19 18 17 21 21 C 1.53031 * 110.14643 * 17.39440 * 20 19 18 22 22 H 1.09004 * 109.47082 * 299.99858 * 1 2 3 23 23 H 1.09004 * 109.46953 * 59.99503 * 1 2 3 24 24 H 1.08992 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46934 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47643 * 300.00178 * 3 2 1 27 27 H 1.08996 * 109.47141 * 60.00494 * 3 2 1 28 28 H 1.08999 * 109.47230 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47095 * 299.99799 * 4 2 1 30 30 H 0.97002 * 120.00330 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.46899 * 179.97438 * 13 2 1 32 32 H 1.09003 * 109.47487 * 59.99369 * 13 2 1 33 33 H 1.00897 * 111.00358 * 303.95421 * 14 13 2 34 34 H 1.08997 * 109.36158 * 311.08642 * 17 15 14 35 35 H 1.09002 * 109.36095 * 70.81207 * 17 15 14 36 36 H 1.08005 * 117.96869 * 197.35042 * 18 17 15 37 37 H 1.08002 * 117.96781 * 179.29694 * 19 18 17 38 38 H 1.08997 * 109.35957 * 137.60317 * 20 19 18 39 39 H 1.08999 * 109.36090 * 257.18937 * 20 19 18 40 40 H 1.08996 * 109.63819 * 70.24884 * 21 20 19 41 41 H 1.09001 * 109.63955 * 190.88160 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7321 8 7 2.6263 -1.5513 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 0.4237 1.5661 -4.8530 11 1 2.4035 0.8648 -6.0656 12 1 0.4225 -0.5337 -6.0655 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0208 -0.6954 3.6702 16 1 3.0198 -1.0994 3.5056 17 6 1.0589 -1.8257 4.0425 18 6 1.3767 -2.3419 5.4154 19 6 2.0893 -1.6999 6.2846 20 6 2.7150 -0.3592 6.0334 21 6 2.0562 0.3122 4.8264 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1300 -0.7216 -1.2491 29 1 1.6767 -1.7489 -1.2493 30 1 2.8607 -1.8828 -4.7337 31 1 3.1300 -0.7217 1.2489 32 1 1.6766 -1.7490 1.2492 33 1 1.8198 0.9434 2.4402 34 1 0.0356 -1.4508 4.0218 35 1 1.1606 -2.6384 3.3233 36 1 0.9833 -3.3075 5.6971 37 1 2.2471 -2.1596 7.2491 38 1 2.5846 0.2709 6.9132 39 1 3.7797 -0.4881 5.8386 40 1 1.0400 0.6112 5.0830 41 1 2.6358 1.1872 4.5322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126921845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:59 Heat of formation + Delta-G solvation = -31.029337 kcal Electronic energy + Delta-G solvation = -17235.481379 eV Core-core repulsion = 14727.485072 eV Total energy + Delta-G solvation = -2507.996307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04492 -38.49869 -35.29794 -34.00855 -31.68873 -30.16824 -28.73370 -27.88797 -26.62419 -24.65766 -23.61330 -22.25427 -19.55712 -18.65152 -18.33264 -17.26910 -16.52245 -16.37270 -15.68047 -15.40453 -14.94180 -14.50767 -14.47297 -13.91128 -13.86967 -13.75659 -13.58831 -13.25621 -13.11742 -12.81820 -12.67559 -12.49998 -12.25199 -12.15703 -11.89991 -11.83820 -11.51602 -11.35955 -11.17560 -10.83636 -10.67299 -10.51286 -9.84219 -9.29005 -8.14013 -6.21167 1.40377 1.41341 1.44160 1.53716 2.43939 3.20011 3.22176 3.79254 3.91805 4.14163 4.16914 4.25721 4.38665 4.44059 4.48090 4.56781 4.69804 4.74165 4.77333 4.84922 4.95869 5.01270 5.03449 5.09131 5.13282 5.22315 5.22686 5.27892 5.39510 5.51977 5.54121 5.59011 5.66204 5.80458 5.87725 5.93037 6.08458 6.15767 6.37500 6.58370 6.94258 7.46349 8.98720 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053205 B = 0.004553 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.143309 B = 6147.663752 C = 6295.742732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.085 3.915 14 N -0.678 5.678 15 C 0.085 3.915 16 H 0.031 0.969 17 C -0.079 4.079 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.089 4.089 21 C -0.115 4.115 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.069 0.931 28 H -0.017 1.017 29 H -0.018 1.018 30 H 0.259 0.741 31 H 0.014 0.986 32 H 0.052 0.948 33 H 0.346 0.654 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 3.672 19.327 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.045 4.045 14 N -0.310 5.310 15 C -0.025 4.025 16 H 0.049 0.951 17 C -0.117 4.117 18 C -0.183 4.183 19 C -0.178 4.178 20 C -0.126 4.126 21 C -0.153 4.153 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.061 3.258 19.209 19.592 hybrid contribution 0.936 -0.104 -1.344 1.641 sum -1.125 3.154 17.865 18.176 Atomic orbital electron populations 1.21497 0.94252 1.00018 1.00565 1.20497 0.96342 0.95671 0.93068 1.21681 0.99421 0.95532 1.01292 1.19018 0.93894 0.94068 0.92867 1.21656 1.30126 1.11927 0.91405 0.91502 1.25932 0.95701 0.95898 1.02627 1.70119 1.38947 1.25011 1.23974 0.85510 0.78129 0.78824 0.79286 1.18366 1.20777 1.20868 1.21823 0.95444 0.97458 0.89754 1.60511 1.63605 1.06416 1.00495 1.21587 0.95699 0.95341 0.89859 0.95092 1.20398 0.99987 0.96996 0.94316 1.22165 1.00619 1.00273 0.95217 1.22254 0.98936 0.97164 0.99492 1.20478 0.99523 0.94286 0.98325 1.21761 1.01990 0.97334 0.94235 0.91285 0.94248 0.95256 0.94513 0.93391 0.91249 0.99896 0.99937 0.93178 0.96827 0.92949 0.83393 0.90426 0.92920 0.87194 0.86482 0.89158 0.90768 0.90930 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 2 C -0.06 -2.24 0.60 -52.18 -0.03 -2.27 16 3 C -0.12 -4.42 7.89 71.98 0.57 -3.86 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.72 7.65 25.60 0.20 -28.52 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.08 2.99 4.45 86.30 0.38 3.38 16 14 N -0.68 -18.92 5.53 -490.85 -2.71 -21.63 16 15 C 0.08 2.07 2.54 45.05 0.11 2.19 16 16 H 0.03 0.84 7.79 -2.38 -0.02 0.82 16 17 C -0.08 -1.93 5.59 29.66 0.17 -1.76 16 18 C -0.16 -3.34 9.80 27.04 0.27 -3.07 16 19 C -0.16 -2.81 9.80 27.04 0.27 -2.55 16 20 C -0.09 -1.42 6.12 29.66 0.18 -1.24 16 21 C -0.12 -2.17 5.36 30.74 0.16 -2.00 16 22 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 23 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 27 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 28 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 32 H 0.05 1.98 7.76 -2.39 -0.02 1.96 16 33 H 0.35 8.81 6.32 -89.70 -0.57 8.24 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.42 7.83 -2.39 -0.02 1.40 16 36 H 0.11 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.12 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 41 H 0.07 1.24 8.00 -2.39 -0.02 1.22 16 Total: -1.00 -62.98 315.43 3.44 -59.54 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.41 Total: 13.91 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.44 Total: -40.86 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.43 Total: -79.41 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.98 3.44 -59.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126921845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -62.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds