Wall clock time and date at job start Sun Mar 29 2020 21:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46910 * 109.47191 * 2 1 4 4 C 1.46900 * 110.99955 * 163.73321 * 3 2 1 5 5 C 1.50697 * 109.47164 * 293.95637 * 4 3 2 6 6 H 1.08003 * 120.00190 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00217 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99947 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00372 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47034 * 90.00118 * 9 7 5 11 11 H 1.48499 * 109.47106 * 209.99998 * 9 7 5 12 12 H 1.48497 * 109.46865 * 329.99952 * 9 7 5 13 13 C 1.46894 * 110.99901 * 287.68819 * 3 2 1 14 14 C 1.50700 * 109.47083 * 161.33303 * 13 3 2 15 15 C 1.39872 * 126.03953 * 96.69454 * 14 13 3 16 16 C 1.50701 * 125.89830 * 0.02562 * 15 14 13 17 17 N 1.30834 * 108.20634 * 179.97438 * 15 14 13 18 18 N 1.40086 * 108.20401 * 359.97438 * 17 15 14 19 19 H 0.96992 * 126.03990 * 179.97438 * 18 17 15 20 20 C 1.34953 * 107.92530 * 359.76595 * 18 17 15 21 21 C 1.50697 * 126.12883 * 180.23605 * 20 18 17 22 22 H 1.08997 * 109.47796 * 67.57852 * 1 2 3 23 23 H 1.09002 * 109.47120 * 187.58885 * 1 2 3 24 24 H 1.09004 * 109.46964 * 307.58123 * 1 2 3 25 25 H 1.08998 * 109.47099 * 240.00587 * 2 1 3 26 26 H 1.08992 * 109.47743 * 119.99969 * 2 1 3 27 27 H 1.09001 * 109.46903 * 53.95289 * 4 3 2 28 28 H 1.08996 * 109.46905 * 173.95615 * 4 3 2 29 29 H 0.97000 * 120.00323 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47340 * 281.33676 * 13 3 2 31 31 H 1.09005 * 109.47301 * 41.33366 * 13 3 2 32 32 H 1.08998 * 109.47728 * 89.99570 * 16 15 14 33 33 H 1.08999 * 109.47555 * 210.00403 * 16 15 14 34 34 H 1.09013 * 109.46973 * 329.99647 * 16 15 14 35 35 H 1.09005 * 109.47140 * 264.85873 * 21 20 18 36 36 H 1.09002 * 109.47124 * 24.85915 * 21 20 18 37 37 H 1.09004 * 109.47115 * 144.85731 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4364 1.4425 0.3842 5 6 3.5855 1.0095 1.8198 6 1 2.7149 0.7209 2.3901 7 6 4.8332 0.9827 2.4058 8 7 5.8933 1.3356 1.7119 9 14 5.0181 0.4466 4.1857 10 1 5.2344 -1.0215 4.2405 11 1 6.1812 1.1414 4.7937 12 1 3.7856 0.7939 4.9377 13 6 1.8023 2.0203 -1.3066 14 6 1.8766 3.5179 -1.1556 15 6 2.9988 4.3152 -1.4028 16 6 4.3459 3.8251 -1.8678 17 7 2.6769 5.5602 -1.1618 18 7 1.3373 5.5946 -0.7536 19 1 0.8351 6.3879 -0.5100 20 6 0.8674 4.3295 -0.7634 21 6 -0.5296 3.8977 -0.3989 22 1 -0.3634 0.3919 -0.9499 23 1 -0.3633 -1.0187 0.1357 24 1 -0.3633 0.6268 0.8145 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0141 0.7775 -0.2578 28 1 3.8019 2.4633 0.2727 29 1 6.7712 1.3165 2.1240 30 1 2.5700 1.6869 -2.0049 31 1 0.8195 1.7417 -1.6870 32 1 4.3748 3.8204 -2.9573 33 1 5.1245 4.4858 -1.4865 34 1 4.5131 2.8142 -1.4955 35 1 -0.5539 3.5907 0.6467 36 1 -1.2179 4.7294 -0.5495 37 1 -0.8276 3.0607 -1.0304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127681175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:48 Heat of formation + Delta-G solvation = 63.375059 kcal Electronic energy + Delta-G solvation = -17500.671654 eV Core-core repulsion = 14893.228685 eV Total energy + Delta-G solvation = -2607.442969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85889 -36.78187 -32.98161 -32.60617 -31.71636 -29.77160 -28.23947 -26.99695 -26.13534 -24.02504 -22.29743 -20.23092 -19.53434 -18.58611 -16.93017 -16.24661 -14.97881 -14.87734 -14.14803 -13.90703 -13.56337 -13.36612 -12.89371 -12.86846 -12.60746 -12.11695 -12.06360 -11.91937 -11.62364 -11.56642 -11.25929 -11.05341 -10.91269 -10.65596 -10.41648 -10.07373 -9.96517 -9.65862 -9.06740 -8.72915 -8.35020 -7.85846 -7.08578 -5.95098 -3.94748 2.33189 3.22768 3.30102 3.35006 3.41474 3.45654 4.49138 5.06335 5.17323 5.21391 5.33238 5.40754 5.66093 5.77388 5.79553 5.91012 5.97871 6.08702 6.09998 6.11731 6.17730 6.24152 6.45049 6.50782 6.59242 6.70832 6.78891 6.87215 7.20471 7.45419 7.48340 7.74168 7.89693 8.18915 8.23682 8.36663 8.67922 9.12631 9.68386 11.15648 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.008649 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.925203 B = 3236.653250 C = 3859.892733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.531 5.531 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.129 3.871 14 C -0.206 4.206 15 C 0.096 3.904 16 C -0.080 4.080 17 N -0.308 5.308 18 N -0.486 5.486 19 H 0.431 0.569 20 C 0.094 3.906 21 C -0.083 4.083 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.016 0.984 26 H 0.084 0.916 27 H -0.013 1.013 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 3.068 -6.607 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.256 5.256 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.000 4.000 14 C -0.218 4.218 15 C -0.070 4.070 16 C -0.138 4.138 17 N -0.131 5.131 18 N -0.194 5.194 19 H 0.273 0.727 20 C -0.034 4.034 21 C -0.141 4.141 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.004 0.996 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.405 4.526 -6.225 12.942 hybrid contribution 0.201 -1.017 0.641 1.218 sum -10.204 3.509 -5.585 12.150 Atomic orbital electron populations 1.21816 0.96889 1.00322 1.01090 1.21962 0.93927 0.90692 1.00792 1.62168 1.23180 1.15165 1.25093 1.19811 0.81020 0.97268 0.95319 1.21186 0.92685 1.43628 0.96772 0.92105 1.24954 0.95963 0.95804 0.97845 1.69944 0.98506 1.48710 1.36522 0.86580 0.77589 0.78461 0.85263 1.20839 1.21374 1.19939 1.20256 0.99450 0.88652 0.91623 1.19604 0.92646 0.96333 1.13189 1.22212 0.96738 0.90284 0.97807 1.20325 0.90337 1.03014 1.00140 1.77190 0.92357 1.20479 1.23119 1.46022 1.09902 1.07103 1.56419 0.72654 1.20722 0.97071 0.85125 1.00486 1.20356 0.89137 1.01243 1.03379 0.93931 0.93541 0.92207 0.96596 0.89787 0.99568 0.94094 0.93086 0.95161 0.91835 0.91416 0.91086 0.89050 0.89745 0.92266 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.85 37.15 0.37 -1.77 16 2 C 0.05 1.04 5.52 -3.82 -0.02 1.01 16 3 N -0.53 -11.25 4.38 -237.52 -1.04 -12.29 16 4 C 0.19 4.92 3.78 -4.98 -0.02 4.90 16 5 C -0.50 -14.19 8.28 -34.44 -0.29 -14.48 16 6 H 0.06 1.70 7.26 -52.48 -0.38 1.32 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.13 2.37 4.79 -4.98 -0.02 2.34 16 14 C -0.21 -3.84 5.07 -105.05 -0.53 -4.37 16 15 C 0.10 1.88 6.58 -82.41 -0.54 1.34 16 16 C -0.08 -1.44 9.68 36.01 0.35 -1.09 16 17 N -0.31 -5.88 12.70 33.67 0.43 -5.45 16 18 N -0.49 -7.69 7.36 33.48 0.25 -7.45 16 19 H 0.43 5.14 8.96 -182.62 -1.64 3.51 16 20 C 0.09 1.52 7.21 -82.26 -0.59 0.93 16 21 C -0.08 -1.00 10.17 36.00 0.37 -0.63 16 22 H 0.04 0.57 6.81 -51.93 -0.35 0.21 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.02 0.29 8.05 -51.93 -0.42 -0.12 16 26 H 0.08 1.77 6.58 -51.93 -0.34 1.43 16 27 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 28 H 0.04 1.14 5.31 -51.93 -0.28 0.86 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.57 7.45 -51.93 -0.39 0.18 16 31 H 0.06 1.01 5.71 -51.93 -0.30 0.71 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.84 5.76 -51.92 -0.30 1.54 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.91 7.45 -51.93 -0.39 0.52 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -32.01 299.61 -8.04 -40.05 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.87 Total: -0.03 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.03 Total: -10.33 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.37 Total: -51.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.01 -8.04 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127681175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.427 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds