Wall clock time and date at job start Sun Mar 29 2020 21:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46910 * 109.47191 * 2 1 4 4 C 1.46900 * 110.99955 * 163.73321 * 3 2 1 5 5 C 1.50697 * 109.47164 * 293.95637 * 4 3 2 6 6 H 1.08003 * 120.00190 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00217 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99947 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00372 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47034 * 90.00118 * 9 7 5 11 11 H 1.48499 * 109.47106 * 209.99998 * 9 7 5 12 12 H 1.48497 * 109.46865 * 329.99952 * 9 7 5 13 13 C 1.46894 * 110.99901 * 287.68819 * 3 2 1 14 14 C 1.50700 * 109.47083 * 161.33303 * 13 3 2 15 15 C 1.39872 * 126.03953 * 96.69454 * 14 13 3 16 16 C 1.50701 * 125.89830 * 0.02562 * 15 14 13 17 17 N 1.30834 * 108.20634 * 179.97438 * 15 14 13 18 18 N 1.40086 * 108.20401 * 359.97438 * 17 15 14 19 19 H 0.96992 * 126.03990 * 179.97438 * 18 17 15 20 20 C 1.34953 * 107.92530 * 359.76595 * 18 17 15 21 21 C 1.50697 * 126.12883 * 180.23605 * 20 18 17 22 22 H 1.08997 * 109.47796 * 67.57852 * 1 2 3 23 23 H 1.09002 * 109.47120 * 187.58885 * 1 2 3 24 24 H 1.09004 * 109.46964 * 307.58123 * 1 2 3 25 25 H 1.08998 * 109.47099 * 240.00587 * 2 1 3 26 26 H 1.08992 * 109.47743 * 119.99969 * 2 1 3 27 27 H 1.09001 * 109.46903 * 53.95289 * 4 3 2 28 28 H 1.08996 * 109.46905 * 173.95615 * 4 3 2 29 29 H 0.97000 * 120.00323 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47340 * 281.33676 * 13 3 2 31 31 H 1.09005 * 109.47301 * 41.33366 * 13 3 2 32 32 H 1.08998 * 109.47728 * 89.99570 * 16 15 14 33 33 H 1.08999 * 109.47555 * 210.00403 * 16 15 14 34 34 H 1.09013 * 109.46973 * 329.99647 * 16 15 14 35 35 H 1.09005 * 109.47140 * 264.85873 * 21 20 18 36 36 H 1.09002 * 109.47124 * 24.85915 * 21 20 18 37 37 H 1.09004 * 109.47115 * 144.85731 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4364 1.4425 0.3842 5 6 3.5855 1.0095 1.8198 6 1 2.7149 0.7209 2.3901 7 6 4.8332 0.9827 2.4058 8 7 5.8933 1.3356 1.7119 9 14 5.0181 0.4466 4.1857 10 1 5.2344 -1.0215 4.2405 11 1 6.1812 1.1414 4.7937 12 1 3.7856 0.7939 4.9377 13 6 1.8023 2.0203 -1.3066 14 6 1.8766 3.5179 -1.1556 15 6 2.9988 4.3152 -1.4028 16 6 4.3459 3.8251 -1.8678 17 7 2.6769 5.5602 -1.1618 18 7 1.3373 5.5946 -0.7536 19 1 0.8351 6.3879 -0.5100 20 6 0.8674 4.3295 -0.7634 21 6 -0.5296 3.8977 -0.3989 22 1 -0.3634 0.3919 -0.9499 23 1 -0.3633 -1.0187 0.1357 24 1 -0.3633 0.6268 0.8145 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0141 0.7775 -0.2578 28 1 3.8019 2.4633 0.2727 29 1 6.7712 1.3165 2.1240 30 1 2.5700 1.6869 -2.0049 31 1 0.8195 1.7417 -1.6870 32 1 4.3748 3.8204 -2.9573 33 1 5.1245 4.4858 -1.4865 34 1 4.5131 2.8142 -1.4955 35 1 -0.5539 3.5907 0.6467 36 1 -1.2179 4.7294 -0.5495 37 1 -0.8276 3.0607 -1.0304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127681175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:47 Heat of formation + Delta-G solvation = 41.079848 kcal Electronic energy + Delta-G solvation = -17501.638447 eV Core-core repulsion = 14893.228685 eV Total energy + Delta-G solvation = -2608.409762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20735 -38.42842 -34.74072 -34.28905 -33.04935 -31.29539 -29.77053 -28.50082 -27.66024 -25.59477 -24.10748 -21.76373 -20.94898 -20.01090 -18.60017 -18.01508 -16.79717 -16.36527 -15.84760 -15.43300 -15.06733 -14.79364 -14.32109 -14.15039 -14.00295 -13.79519 -13.63829 -13.19178 -13.06494 -12.92477 -12.81443 -12.57125 -12.55580 -12.44208 -12.24300 -11.76514 -11.50597 -11.25895 -11.11756 -10.53647 -10.08310 -9.23987 -8.81547 -8.13519 -6.21587 1.00744 1.40039 1.41494 1.52269 1.79957 2.09225 2.43112 3.18544 3.61302 3.80816 3.89082 4.27719 4.34447 4.45023 4.54928 4.62228 4.72783 4.72895 4.74208 4.86469 4.90582 5.03988 5.09861 5.19698 5.22038 5.27904 5.32507 5.41772 5.53551 5.58275 5.73051 5.79059 6.18848 6.53333 6.57908 6.81166 6.84271 6.96512 7.46713 8.96617 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.008649 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.925203 B = 3236.653250 C = 3859.892733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.210 3.790 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.135 3.865 14 C -0.242 4.242 15 C 0.074 3.926 16 C -0.073 4.073 17 N -0.336 5.336 18 N -0.473 5.473 19 H 0.448 0.552 20 C 0.110 3.890 21 C -0.081 4.081 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.017 0.983 26 H 0.055 0.945 27 H -0.046 1.046 28 H 0.017 0.983 29 H 0.261 0.739 30 H 0.018 0.982 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 3.050 -6.209 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 N -0.258 5.258 4 C 0.084 3.916 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.007 3.993 14 C -0.254 4.254 15 C -0.092 4.092 16 C -0.132 4.132 17 N -0.160 5.160 18 N -0.184 5.184 19 H 0.294 0.706 20 C -0.020 4.020 21 C -0.139 4.139 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.074 0.926 27 H -0.028 1.028 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.004 4.520 -5.833 14.952 hybrid contribution 0.953 -0.978 0.476 1.446 sum -12.050 3.541 -5.358 13.655 Atomic orbital electron populations 1.21707 0.92977 1.01907 1.02212 1.22035 0.97032 0.89175 0.99480 1.62131 1.19777 1.16701 1.27172 1.19394 0.83575 0.94769 0.93869 1.21516 0.92783 1.43495 0.97925 0.92274 1.25832 0.95666 0.95837 1.02313 1.70083 0.98955 1.49700 1.38395 0.85513 0.77634 0.78399 0.79857 1.19754 1.21146 1.19157 1.20263 1.00623 0.88581 0.89828 1.19778 0.93395 0.96614 1.15564 1.22426 0.97378 0.90922 0.98481 1.20222 0.90216 1.00990 1.01749 1.77104 0.94204 1.20428 1.24308 1.46063 1.09013 1.08057 1.55238 0.70594 1.21315 0.98284 0.84542 0.97895 1.20516 0.87013 1.03152 1.03195 0.91728 0.91420 0.92422 0.96492 0.92625 1.02848 0.96496 0.93020 0.96364 0.88645 0.88748 0.91772 0.91850 0.90080 0.88723 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.85 71.98 0.71 -2.78 16 2 C 0.05 1.90 5.52 86.30 0.48 2.37 16 3 N -0.53 -22.61 4.38 -905.38 -3.96 -26.58 16 4 C 0.21 11.27 3.78 85.56 0.32 11.59 16 5 C -0.52 -29.85 8.28 25.60 0.21 -29.64 16 6 H 0.06 3.35 7.26 -2.91 -0.02 3.32 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 9 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.14 4.88 4.79 85.56 0.41 5.29 16 14 C -0.24 -8.86 5.07 -20.14 -0.10 -8.97 16 15 C 0.07 2.92 6.58 43.10 0.28 3.20 16 16 C -0.07 -2.77 9.68 71.24 0.69 -2.08 16 17 N -0.34 -12.77 12.70 -47.38 -0.60 -13.37 16 18 N -0.47 -14.17 7.36 -48.00 -0.35 -14.53 16 19 H 0.45 9.64 8.96 -213.34 -1.91 7.73 16 20 C 0.11 3.29 7.21 41.40 0.30 3.59 16 21 C -0.08 -1.62 10.17 71.23 0.72 -0.90 16 22 H 0.06 1.45 6.81 -2.39 -0.02 1.43 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.02 0.62 8.05 -2.39 -0.02 0.60 16 26 H 0.06 2.37 6.58 -2.39 -0.02 2.35 16 27 H -0.05 -2.71 8.12 -2.39 -0.02 -2.73 16 28 H 0.02 0.99 5.31 -2.39 -0.01 0.98 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.02 0.69 7.45 -2.39 -0.02 0.68 16 31 H 0.10 2.77 5.71 -2.38 -0.01 2.75 16 32 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.74 5.76 -2.38 -0.01 2.72 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.69 7.45 -2.38 -0.02 1.68 16 Total: -1.00 -70.97 299.61 1.04 -69.94 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -0.85 Total: 11.58 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.49 Total: -17.78 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.63 Total: -111.08 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.97 1.04 -69.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127681175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.018 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds