Wall clock time and date at job start Sun Mar 29 2020 22:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.01950 * 2 1 4 4 C 1.54267 * 110.02906 * 238.55876 * 2 1 3 5 5 C 1.54889 * 104.19487 * 264.32430 * 4 2 1 6 6 C 1.54887 * 102.75272 * 322.05991 * 5 4 2 7 7 H 1.09000 * 110.60371 * 279.21061 * 6 5 4 8 8 N 1.46895 * 110.49021 * 156.61895 * 6 5 4 9 9 C 1.46900 * 111.00087 * 90.22641 * 8 6 5 10 10 C 1.53003 * 109.47332 * 185.27131 * 9 8 6 11 11 C 1.50701 * 115.54817 * 294.87832 * 10 9 8 12 12 H 1.07993 * 120.00205 * 95.07002 * 11 10 9 13 13 C 1.37873 * 119.99590 * 275.06397 * 11 10 9 14 14 N 1.31517 * 120.00302 * 6.73868 * 13 11 10 15 15 Si 1.86800 * 119.99995 * 186.73326 * 13 11 10 16 16 H 1.48504 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47078 * 120.00592 * 15 13 11 18 18 H 1.48501 * 109.47284 * 240.00281 * 15 13 11 19 19 C 1.53007 * 117.49542 * 80.54057 * 10 9 8 20 20 C 1.52996 * 117.49929 * 149.19984 * 10 9 8 21 21 C 1.53872 * 110.02922 * 121.39400 * 2 1 3 22 22 H 1.08998 * 109.46919 * 298.61123 * 1 2 3 23 23 H 1.08998 * 109.46803 * 58.60803 * 1 2 3 24 24 H 1.08995 * 109.47112 * 178.60366 * 1 2 3 25 25 H 1.08998 * 109.47493 * 181.39354 * 3 2 1 26 26 H 1.09001 * 109.46927 * 301.39368 * 3 2 1 27 27 H 1.09003 * 109.47141 * 61.39163 * 3 2 1 28 28 H 1.08993 * 110.48983 * 23.00488 * 4 2 1 29 29 H 1.08998 * 110.48484 * 145.52015 * 4 2 1 30 30 H 1.09000 * 110.75820 * 203.74735 * 5 4 2 31 31 H 1.08997 * 110.75612 * 80.37825 * 5 4 2 32 32 H 1.00900 * 111.00162 * 214.18208 * 8 6 5 33 33 H 1.09003 * 109.47198 * 65.27074 * 9 8 6 34 34 H 1.09005 * 109.47132 * 305.27042 * 9 8 6 35 35 H 0.96998 * 120.00154 * 174.93421 * 14 13 11 36 36 H 1.08998 * 117.49511 * 214.99833 * 19 10 9 37 37 H 1.08999 * 117.50094 * 0.03296 * 19 10 9 38 38 H 1.09005 * 117.49818 * 359.97438 * 20 10 9 39 39 H 1.09002 * 117.49632 * 144.99467 * 20 10 9 40 40 H 1.09001 * 110.03585 * 359.97438 * 21 2 1 41 41 H 1.09003 * 110.07267 * 238.58714 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7560 -1.2366 5 6 2.3280 -2.1905 -0.7182 6 6 2.8874 -1.9405 0.7043 7 1 3.9442 -1.6772 0.6601 8 7 2.6889 -3.1247 1.5504 9 6 3.8402 -4.0329 1.4635 10 6 3.5425 -5.3107 2.2506 11 6 3.3820 -5.1349 3.7387 12 1 2.3974 -5.0112 4.1647 13 6 4.4922 -5.1321 4.5561 14 7 5.6970 -5.1494 4.0291 15 14 4.2852 -5.1036 6.4124 16 1 2.8389 -5.0876 6.7490 17 1 4.9164 -6.3128 6.9995 18 1 4.9358 -3.8882 6.9645 19 6 2.6824 -6.3765 1.5683 20 6 4.1834 -6.6096 1.7577 21 6 2.0570 -0.7531 1.2340 22 1 -0.3633 0.4921 0.9022 23 1 -0.3633 0.5353 -0.8772 24 1 -0.3633 -1.0273 -0.0250 25 1 3.1434 1.4272 -0.0250 26 1 1.6752 1.9621 -0.8772 27 1 1.7158 1.9473 0.9022 28 1 1.3061 -0.7705 -2.0251 29 1 2.9798 -0.2994 -1.5979 30 1 3.0675 -2.6937 -1.3411 31 1 1.4031 -2.7654 -0.6740 32 1 2.5090 -2.8595 2.5072 33 1 4.7203 -3.5450 1.8822 34 1 4.0265 -4.2845 0.4193 35 1 6.4774 -5.0733 4.6001 36 1 2.0006 -6.9505 2.1958 37 1 2.3291 -6.1675 0.5585 38 1 4.8168 -6.5539 0.8723 39 1 4.4891 -7.3369 2.5097 40 1 1.2228 -1.1182 1.8331 41 1 2.6865 -0.0951 1.8332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128996582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:04 Heat of formation + Delta-G solvation = -17.216741 kcal Electronic energy + Delta-G solvation = -17456.351975 eV Core-core repulsion = 14948.954627 eV Total energy + Delta-G solvation = -2507.397348 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17041 -38.50895 -35.41631 -33.96321 -31.72085 -29.39673 -28.09762 -27.60393 -25.76100 -24.51669 -22.84538 -21.12612 -20.87251 -19.56953 -17.95589 -16.67754 -16.54082 -16.28544 -15.65846 -15.58942 -14.69172 -14.55642 -14.52136 -14.19571 -13.84436 -13.43794 -13.17244 -12.95658 -12.89292 -12.77981 -12.42615 -12.31824 -12.17746 -12.01385 -11.81615 -11.65759 -11.41493 -11.34545 -11.26183 -11.14102 -10.71682 -10.39589 -9.92135 -9.07794 -8.08725 -6.19943 1.38633 1.42660 1.52968 2.42629 3.19152 3.30883 3.65117 3.71502 3.79413 4.03372 4.33156 4.40124 4.47484 4.51944 4.58383 4.62440 4.70575 4.75104 4.80671 4.87863 4.93896 4.98361 5.03518 5.04842 5.06812 5.13686 5.18204 5.21261 5.27179 5.28136 5.42720 5.47805 5.49836 5.64743 5.66507 5.70119 5.80744 6.43415 6.50561 6.70456 6.90094 7.48193 8.99055 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.006163 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.034234 B = 4542.451884 C = 5063.832458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.106 4.106 6 C 0.075 3.925 7 H 0.025 0.975 8 N -0.671 5.671 9 C 0.125 3.875 10 C 0.025 3.975 11 C -0.501 4.501 12 H 0.053 0.947 13 C 0.024 3.976 14 N -0.910 5.910 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.282 1.282 19 C -0.177 4.177 20 C -0.169 4.169 21 C -0.114 4.114 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.338 0.662 33 H -0.001 1.001 34 H 0.042 0.958 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 10.899 -8.692 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C -0.193 4.193 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.035 4.035 7 H 0.043 0.957 8 N -0.301 5.301 9 C -0.005 4.005 10 C 0.025 3.975 11 C -0.538 4.538 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.774 3.226 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.208 1.208 19 C -0.214 4.214 20 C -0.207 4.207 21 C -0.152 4.152 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.628 10.500 -9.104 15.853 hybrid contribution 1.212 0.088 1.737 2.120 sum -6.417 10.589 -7.367 14.407 Atomic orbital electron populations 1.21864 0.93557 1.01609 1.02039 1.21091 0.96162 0.95302 0.93934 1.21894 1.00520 0.94687 1.02208 1.22444 1.01128 0.93988 0.96997 1.22432 1.00500 0.97298 0.94231 1.22465 0.96558 0.89739 0.94741 0.95701 1.60572 1.39932 1.15505 1.14091 1.21138 0.90048 0.93385 0.95906 1.18922 0.98686 0.86816 0.93103 1.20717 0.92475 1.49881 0.90777 0.92891 1.25673 0.95061 0.94602 1.02234 1.70113 0.98012 1.50527 1.36216 0.85667 0.78351 0.77373 0.81223 1.19076 1.21064 1.20779 1.22832 0.92455 1.05686 1.00439 1.22452 0.94490 1.03185 1.00600 1.22445 0.99215 0.95566 0.97955 0.92615 0.91482 0.93246 0.93171 0.91424 0.92527 0.90283 0.91428 0.92996 0.91427 0.84405 0.98293 0.94001 0.93287 0.90924 0.89713 0.91272 0.92547 0.91410 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.14 71.98 0.59 -1.98 16 2 C -0.06 -1.38 0.94 -51.46 -0.05 -1.43 16 3 C -0.14 -2.48 8.16 71.98 0.59 -1.90 16 4 C -0.11 -2.35 5.90 31.67 0.19 -2.16 16 5 C -0.11 -3.00 6.57 31.88 0.21 -2.79 16 6 C 0.07 2.46 3.19 45.99 0.15 2.60 16 7 H 0.02 0.89 7.87 -2.39 -0.02 0.87 16 8 N -0.67 -26.71 6.30 -486.02 -3.06 -29.77 16 9 C 0.12 5.75 5.37 86.30 0.46 6.21 16 10 C 0.03 1.27 1.56 -52.93 -0.08 1.19 16 11 C -0.50 -27.24 8.32 25.60 0.21 -27.03 16 12 H 0.05 2.90 7.82 -2.91 -0.02 2.87 16 13 C 0.02 1.32 5.39 84.65 0.46 1.78 16 14 N -0.91 -52.49 12.94 21.45 0.28 -52.21 16 15 Si 0.95 43.51 29.55 68.60 2.03 45.54 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.18 -7.91 9.96 30.62 0.30 -7.60 16 20 C -0.17 -8.23 9.45 30.62 0.29 -7.94 16 21 C -0.11 -3.11 5.58 31.32 0.17 -2.94 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 29 H 0.07 1.40 7.84 -2.39 -0.02 1.38 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.34 14.25 7.90 -89.69 -0.71 13.54 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.04 1.84 8.08 -2.38 -0.02 1.82 16 35 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 36 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.07 1.94 7.46 -2.39 -0.02 1.92 16 41 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 Total: -1.00 -57.87 325.26 2.99 -54.89 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.25 Total: 25.53 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 3.49 Total: -43.98 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.78 Total: -81.97 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -57.87 2.99 -54.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128996582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.671 kcal (2) G-P(sol) polarization free energy of solvation -57.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds