Wall clock time and date at job start Sun Mar 29 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.05368 * 2 1 4 4 C 1.54362 * 110.04926 * 238.52390 * 2 1 3 5 5 C 1.54895 * 104.19848 * 217.09060 * 4 2 1 6 6 C 1.54888 * 102.74674 * 37.97114 * 5 4 2 7 7 H 1.09004 * 110.48590 * 80.73684 * 6 5 4 8 8 N 1.46902 * 110.48585 * 203.37844 * 6 5 4 9 9 C 1.46894 * 111.00021 * 267.19529 * 8 6 5 10 10 C 1.53001 * 109.46939 * 184.15787 * 9 8 6 11 11 C 1.50697 * 115.55184 * 65.35887 * 10 9 8 12 12 H 1.08001 * 119.99703 * 265.85887 * 11 10 9 13 13 C 1.37877 * 120.00108 * 85.85472 * 11 10 9 14 14 N 1.31516 * 119.99874 * 184.43636 * 13 11 10 15 15 Si 1.86800 * 119.99942 * 4.44169 * 13 11 10 16 16 H 1.48496 * 109.47219 * 94.27853 * 15 13 11 17 17 H 1.48497 * 109.47289 * 214.27725 * 15 13 11 18 18 H 1.48501 * 109.47070 * 334.27880 * 15 13 11 19 19 C 1.53006 * 117.49707 * 279.68433 * 10 9 8 20 20 C 1.53004 * 117.49805 * 211.02659 * 10 9 8 21 21 C 1.53880 * 110.02865 * 121.41270 * 2 1 3 22 22 H 1.09001 * 109.47490 * 298.58579 * 1 2 3 23 23 H 1.09001 * 109.46840 * 58.58920 * 1 2 3 24 24 H 1.09000 * 109.46749 * 178.58252 * 1 2 3 25 25 H 1.08997 * 109.47211 * 181.41300 * 3 2 1 26 26 H 1.08998 * 109.47241 * 301.41576 * 3 2 1 27 27 H 1.09003 * 109.47666 * 61.41535 * 3 2 1 28 28 H 1.09007 * 110.46438 * 98.42526 * 4 2 1 29 29 H 1.08999 * 110.62585 * 335.83838 * 4 2 1 30 30 H 1.08998 * 110.75437 * 279.65376 * 5 4 2 31 31 H 1.09001 * 110.91681 * 156.35748 * 5 4 2 32 32 H 1.00899 * 110.99739 * 143.23952 * 8 6 5 33 33 H 1.09000 * 109.47505 * 304.15616 * 9 8 6 34 34 H 1.09001 * 109.47115 * 64.15662 * 9 8 6 35 35 H 0.97002 * 119.99437 * 180.02562 * 14 13 11 36 36 H 1.08994 * 117.49904 * 0.02562 * 19 10 9 37 37 H 1.08998 * 117.49544 * 145.02286 * 19 10 9 38 38 H 1.08996 * 117.49996 * 214.97982 * 20 10 9 39 39 H 1.09001 * 117.49795 * 0.02562 * 20 10 9 40 40 H 1.08995 * 110.03233 * 359.97438 * 21 2 1 41 41 H 1.09002 * 110.03183 * 238.61999 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7571 -1.2367 5 6 3.3147 -1.5014 -0.7180 6 6 2.8882 -1.9406 0.7048 7 1 2.2784 -2.8429 0.6588 8 7 4.0690 -2.1591 1.5509 9 6 4.4912 -3.5656 1.5124 10 6 5.6555 -3.7753 2.4826 11 6 5.3293 -3.5812 3.9410 12 1 5.4980 -2.6227 4.4092 13 6 4.8155 -4.6273 4.6777 14 7 4.4493 -4.4350 5.9261 15 14 4.6397 -6.3178 3.9026 16 1 5.8408 -7.1330 4.2152 17 1 3.4313 -6.9883 4.4460 18 1 4.5072 -6.1759 2.4303 19 6 7.0515 -3.3644 2.0102 20 6 6.6879 -4.8468 2.1262 21 6 2.0571 -0.7535 1.2338 22 1 -0.3634 0.4917 0.9024 23 1 -0.3633 0.5356 -0.8771 24 1 -0.3633 -1.0274 -0.0254 25 1 3.1443 1.4262 -0.0253 26 1 1.6761 1.9622 -0.8770 27 1 1.7174 1.9472 0.9024 28 1 2.3304 -0.0557 -2.0258 29 1 1.3165 -1.4682 -1.5984 30 1 4.1716 -0.8293 -0.6743 31 1 3.5374 -2.3688 -1.3395 32 1 3.8951 -1.8596 2.4986 33 1 3.6566 -4.2036 1.8031 34 1 4.8096 -3.8218 0.5019 35 1 4.0881 -5.1711 6.4444 36 1 7.1404 -2.9443 1.0083 37 1 7.7341 -2.9540 2.7543 38 1 7.1314 -5.4110 2.9465 39 1 6.5378 -5.4020 1.2003 40 1 1.2228 -1.1187 1.8328 41 1 2.6859 -0.0950 1.8330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128996823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:07 Heat of formation + Delta-G solvation = 0.729684 kcal Electronic energy + Delta-G solvation = -17530.262029 eV Core-core repulsion = 15023.642896 eV Total energy + Delta-G solvation = -2506.619133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07505 -37.08981 -34.09817 -32.06282 -30.62350 -28.21424 -27.28308 -25.83081 -24.29923 -23.32751 -21.51980 -19.83985 -19.00289 -18.51948 -16.26341 -15.39719 -15.02110 -14.83181 -14.40831 -13.78389 -13.67363 -13.39089 -13.21641 -12.87490 -12.66242 -12.27157 -12.05912 -11.74158 -11.47111 -11.20002 -10.99415 -10.92471 -10.69625 -10.51088 -10.42240 -10.37894 -10.34837 -10.17071 -9.94069 -9.38371 -8.97420 -8.56791 -8.36671 -7.59912 -6.10007 -4.12297 3.29853 3.39382 3.46383 4.44389 4.60394 4.68775 4.78894 4.94535 5.21356 5.28592 5.37201 5.46725 5.53055 5.60094 5.70247 5.71366 5.82787 5.88664 5.92059 5.99374 6.02569 6.12015 6.16327 6.22279 6.24992 6.30670 6.32481 6.45036 6.51015 6.54592 6.57703 6.59888 6.69364 6.85494 7.16888 7.24989 7.80209 7.91262 8.25217 8.54525 8.94803 9.54702 11.01540 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.006367 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.021316 B = 4396.886331 C = 4700.324709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.110 4.110 6 C 0.080 3.920 7 H 0.042 0.958 8 N -0.672 5.672 9 C 0.101 3.899 10 C 0.004 3.996 11 C -0.486 4.486 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.899 5.899 15 Si 0.878 3.122 16 H -0.281 1.281 17 H -0.297 1.297 18 H -0.256 1.256 19 C -0.169 4.169 20 C -0.205 4.205 21 C -0.119 4.119 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.354 0.646 33 H 0.022 0.978 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 6.684 -12.834 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.030 4.030 7 H 0.060 0.940 8 N -0.305 5.305 9 C -0.028 4.028 10 C 0.003 3.997 11 C -0.524 4.524 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.536 5.536 15 Si 0.706 3.294 16 H -0.207 1.207 17 H -0.224 1.224 18 H -0.180 1.180 19 C -0.207 4.207 20 C -0.243 4.243 21 C -0.157 4.157 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.285 6.798 -13.128 15.700 hybrid contribution -0.788 -1.548 0.311 1.764 sum -6.072 5.250 -12.817 15.123 Atomic orbital electron populations 1.21923 0.94919 1.01490 1.01251 1.21112 0.94851 0.95406 0.95388 1.21884 1.01317 0.95062 1.01055 1.22480 0.97627 0.98581 0.96598 1.22493 0.97353 0.99454 0.95544 1.22357 0.90646 0.96156 0.93854 0.94024 1.60559 1.33014 1.20716 1.16167 1.21621 0.96852 0.87591 0.96722 1.19395 0.86784 0.98094 0.95421 1.20318 1.42466 0.99302 0.90300 0.90404 1.24998 0.94216 0.98857 0.94538 1.69915 1.42634 1.32303 1.08766 0.86856 0.77096 0.84576 0.80850 1.20671 1.22373 1.17998 1.22703 1.01515 0.96162 1.00275 1.22973 1.08188 0.92109 1.01041 1.22489 0.99220 0.97136 0.96872 0.92826 0.93069 0.92764 0.92242 0.93227 0.92874 0.92005 0.92058 0.90703 0.92576 0.82574 0.95948 0.93827 0.92696 0.90893 0.90030 0.89844 0.91272 0.92047 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.17 37.16 0.30 -1.14 16 2 C -0.07 -0.78 0.94 -153.34 -0.14 -0.93 16 3 C -0.14 -1.46 8.15 37.16 0.30 -1.16 16 4 C -0.11 -1.33 5.90 -25.02 -0.15 -1.48 16 5 C -0.11 -1.53 6.58 -24.74 -0.16 -1.70 16 6 C 0.08 1.28 3.22 -66.05 -0.21 1.07 16 7 H 0.04 0.70 7.73 -51.93 -0.40 0.30 16 8 N -0.67 -12.83 6.38 -104.98 -0.67 -13.50 16 9 C 0.10 2.14 5.10 -3.83 -0.02 2.12 16 10 C 0.00 0.10 0.99 -155.66 -0.15 -0.06 16 11 C -0.49 -13.31 8.76 -34.44 -0.30 -13.61 16 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 14 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 15 Si 0.88 21.77 24.91 -169.99 -4.23 17.53 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 18 H -0.26 -6.04 5.75 56.52 0.32 -5.72 16 19 C -0.17 -3.57 9.96 -26.69 -0.27 -3.84 16 20 C -0.21 -4.48 7.27 -26.69 -0.19 -4.67 16 21 C -0.12 -1.68 5.58 -25.61 -0.14 -1.82 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.65 7.84 -51.92 -0.41 0.24 16 29 H 0.06 0.68 7.85 -51.93 -0.41 0.28 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.35 7.33 7.59 -39.29 -0.30 7.03 16 33 H 0.02 0.51 7.02 -51.93 -0.36 0.14 16 34 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.08 1.90 7.04 -51.93 -0.37 1.53 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 0.86 7.67 -51.93 -0.40 0.47 16 41 H 0.07 1.11 7.42 -51.93 -0.39 0.72 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -28.27 315.44 -8.34 -36.62 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.73 Total: 6.03 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -1.24 Total: -25.15 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.10 Total: -39.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.23 Total: 17.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.27 -8.34 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128996823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.346 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds