Wall clock time and date at job start Sun Mar 29 2020 22:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.05368 * 2 1 4 4 C 1.54362 * 110.04926 * 238.52390 * 2 1 3 5 5 C 1.54895 * 104.19848 * 217.09060 * 4 2 1 6 6 C 1.54888 * 102.74674 * 37.97114 * 5 4 2 7 7 H 1.09004 * 110.48590 * 80.73684 * 6 5 4 8 8 N 1.46902 * 110.48585 * 203.37844 * 6 5 4 9 9 C 1.46894 * 111.00021 * 267.19529 * 8 6 5 10 10 C 1.53001 * 109.46939 * 184.15787 * 9 8 6 11 11 C 1.50697 * 115.55184 * 65.35887 * 10 9 8 12 12 H 1.08001 * 119.99703 * 265.85887 * 11 10 9 13 13 C 1.37877 * 120.00108 * 85.85472 * 11 10 9 14 14 N 1.31516 * 119.99874 * 184.43636 * 13 11 10 15 15 Si 1.86800 * 119.99942 * 4.44169 * 13 11 10 16 16 H 1.48496 * 109.47219 * 94.27853 * 15 13 11 17 17 H 1.48497 * 109.47289 * 214.27725 * 15 13 11 18 18 H 1.48501 * 109.47070 * 334.27880 * 15 13 11 19 19 C 1.53006 * 117.49707 * 279.68433 * 10 9 8 20 20 C 1.53004 * 117.49805 * 211.02659 * 10 9 8 21 21 C 1.53880 * 110.02865 * 121.41270 * 2 1 3 22 22 H 1.09001 * 109.47490 * 298.58579 * 1 2 3 23 23 H 1.09001 * 109.46840 * 58.58920 * 1 2 3 24 24 H 1.09000 * 109.46749 * 178.58252 * 1 2 3 25 25 H 1.08997 * 109.47211 * 181.41300 * 3 2 1 26 26 H 1.08998 * 109.47241 * 301.41576 * 3 2 1 27 27 H 1.09003 * 109.47666 * 61.41535 * 3 2 1 28 28 H 1.09007 * 110.46438 * 98.42526 * 4 2 1 29 29 H 1.08999 * 110.62585 * 335.83838 * 4 2 1 30 30 H 1.08998 * 110.75437 * 279.65376 * 5 4 2 31 31 H 1.09001 * 110.91681 * 156.35748 * 5 4 2 32 32 H 1.00899 * 110.99739 * 143.23952 * 8 6 5 33 33 H 1.09000 * 109.47505 * 304.15616 * 9 8 6 34 34 H 1.09001 * 109.47115 * 64.15662 * 9 8 6 35 35 H 0.97002 * 119.99437 * 180.02562 * 14 13 11 36 36 H 1.08994 * 117.49904 * 0.02562 * 19 10 9 37 37 H 1.08998 * 117.49544 * 145.02286 * 19 10 9 38 38 H 1.08996 * 117.49996 * 214.97982 * 20 10 9 39 39 H 1.09001 * 117.49795 * 0.02562 * 20 10 9 40 40 H 1.08995 * 110.03233 * 359.97438 * 21 2 1 41 41 H 1.09002 * 110.03183 * 238.61999 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7571 -1.2367 5 6 3.3147 -1.5014 -0.7180 6 6 2.8882 -1.9406 0.7048 7 1 2.2784 -2.8429 0.6588 8 7 4.0690 -2.1591 1.5509 9 6 4.4912 -3.5656 1.5124 10 6 5.6555 -3.7753 2.4826 11 6 5.3293 -3.5812 3.9410 12 1 5.4980 -2.6227 4.4092 13 6 4.8155 -4.6273 4.6777 14 7 4.4493 -4.4350 5.9261 15 14 4.6397 -6.3178 3.9026 16 1 5.8408 -7.1330 4.2152 17 1 3.4313 -6.9883 4.4460 18 1 4.5072 -6.1759 2.4303 19 6 7.0515 -3.3644 2.0102 20 6 6.6879 -4.8468 2.1262 21 6 2.0571 -0.7535 1.2338 22 1 -0.3634 0.4917 0.9024 23 1 -0.3633 0.5356 -0.8771 24 1 -0.3633 -1.0274 -0.0254 25 1 3.1443 1.4262 -0.0253 26 1 1.6761 1.9622 -0.8770 27 1 1.7174 1.9472 0.9024 28 1 2.3304 -0.0557 -2.0258 29 1 1.3165 -1.4682 -1.5984 30 1 4.1716 -0.8293 -0.6743 31 1 3.5374 -2.3688 -1.3395 32 1 3.8951 -1.8596 2.4986 33 1 3.6566 -4.2036 1.8031 34 1 4.8096 -3.8218 0.5019 35 1 4.0881 -5.1711 6.4444 36 1 7.1404 -2.9443 1.0083 37 1 7.7341 -2.9540 2.7543 38 1 7.1314 -5.4110 2.9465 39 1 6.5378 -5.4020 1.2003 40 1 1.2228 -1.1187 1.8328 41 1 2.6859 -0.0950 1.8330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128996823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:06 Heat of formation + Delta-G solvation = -15.877828 kcal Electronic energy + Delta-G solvation = -17530.982184 eV Core-core repulsion = 15023.642896 eV Total energy + Delta-G solvation = -2507.339288 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20569 -38.78761 -35.47189 -34.22259 -31.76060 -29.44255 -28.11760 -27.83170 -25.79117 -24.53451 -23.24302 -21.13321 -20.77654 -19.58825 -18.23116 -16.89147 -16.55852 -16.34416 -15.67388 -15.42276 -14.84561 -14.67472 -14.57380 -14.36256 -13.92856 -13.86578 -13.36327 -13.04990 -12.95523 -12.70480 -12.42875 -12.31556 -12.08291 -11.87507 -11.84353 -11.68014 -11.39678 -11.35229 -11.26656 -11.20198 -10.95792 -10.53957 -10.22590 -9.14634 -8.29544 -6.35162 1.32845 1.36519 1.49824 2.36543 3.04414 3.11207 3.59234 3.63441 3.77642 4.00773 4.16244 4.37065 4.41922 4.45082 4.50196 4.56329 4.57517 4.66886 4.72748 4.79398 4.86427 4.88439 4.90316 4.96640 5.02755 5.11035 5.14875 5.16220 5.18977 5.26086 5.38168 5.43641 5.46243 5.49335 5.52986 5.63597 5.75076 6.31808 6.42228 6.59883 6.76040 7.34662 8.85597 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.006367 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.021316 B = 4396.886331 C = 4700.324709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.108 4.108 5 C -0.105 4.105 6 C 0.074 3.926 7 H 0.033 0.967 8 N -0.674 5.674 9 C 0.111 3.889 10 C -0.022 4.022 11 C -0.480 4.480 12 H 0.034 0.966 13 C 0.021 3.979 14 N -0.948 5.948 15 Si 0.936 3.064 16 H -0.274 1.274 17 H -0.301 1.301 18 H -0.233 1.233 19 C -0.154 4.154 20 C -0.198 4.198 21 C -0.118 4.118 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.338 0.662 33 H 0.004 0.996 34 H 0.064 0.936 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 6.478 -15.844 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 C -0.191 4.191 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.036 4.036 7 H 0.051 0.949 8 N -0.304 5.304 9 C -0.019 4.019 10 C -0.023 4.023 11 C -0.518 4.518 12 H 0.052 0.948 13 C -0.176 4.176 14 N -0.588 5.588 15 Si 0.761 3.239 16 H -0.200 1.200 17 H -0.228 1.228 18 H -0.155 1.155 19 C -0.191 4.191 20 C -0.236 4.236 21 C -0.156 4.156 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.569 6.605 -16.174 18.336 hybrid contribution -0.664 -1.377 1.300 2.006 sum -6.232 5.228 -14.874 16.953 Atomic orbital electron populations 1.21898 0.93711 1.01635 1.02108 1.21112 0.95805 0.95582 0.94019 1.21863 1.00727 0.94565 1.01946 1.22460 0.96525 0.98788 0.96767 1.22438 0.98258 0.99663 0.93941 1.22516 0.89806 0.96525 0.94768 0.94881 1.60634 1.34803 1.19505 1.15484 1.21473 0.95271 0.88284 0.96841 1.19352 0.88678 1.00802 0.93443 1.20439 1.41343 0.97345 0.92667 0.94764 1.25787 0.94206 1.02773 0.94853 1.70055 1.44661 1.33492 1.10550 0.85925 0.76919 0.79800 0.81247 1.20003 1.22810 1.15541 1.22712 0.99258 0.95952 1.01194 1.23020 1.06448 0.92349 1.01769 1.22486 0.98579 0.96565 0.98004 0.92860 0.91315 0.93050 0.93163 0.91361 0.92951 0.90229 0.91239 0.91399 0.92237 0.84311 0.97777 0.91769 0.92744 0.88299 0.90941 0.91027 0.88422 0.92648 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.17 71.98 0.59 -1.93 16 2 C -0.06 -1.38 0.94 -51.42 -0.05 -1.43 16 3 C -0.13 -2.60 8.15 71.98 0.59 -2.01 16 4 C -0.11 -2.19 5.90 31.70 0.19 -2.00 16 5 C -0.10 -2.69 6.58 31.89 0.21 -2.48 16 6 C 0.07 2.29 3.22 45.99 0.15 2.44 16 7 H 0.03 1.09 7.73 -2.38 -0.02 1.07 16 8 N -0.67 -25.55 6.38 -486.03 -3.10 -28.65 16 9 C 0.11 4.53 5.10 86.30 0.44 4.97 16 10 C -0.02 -0.99 0.99 -52.92 -0.05 -1.04 16 11 C -0.48 -26.95 8.76 25.60 0.22 -26.73 16 12 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 13 C 0.02 1.22 5.47 84.65 0.46 1.68 16 14 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 15 Si 0.94 44.77 24.91 68.60 1.71 46.48 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 18 H -0.23 -10.16 5.75 99.48 0.57 -9.59 16 19 C -0.15 -6.19 9.96 30.62 0.30 -5.88 16 20 C -0.20 -8.11 7.27 30.62 0.22 -7.89 16 21 C -0.12 -3.28 5.58 31.32 0.17 -3.11 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.38 7.84 -2.38 -0.02 1.36 16 29 H 0.07 1.32 7.85 -2.39 -0.02 1.31 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.34 14.48 7.59 -89.69 -0.68 13.80 16 33 H 0.00 0.18 7.02 -2.39 -0.02 0.16 16 34 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.07 3.11 7.04 -2.39 -0.02 3.09 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.05 1.57 7.67 -2.39 -0.02 1.55 16 41 H 0.06 1.89 7.42 -2.39 -0.02 1.87 16 Total: -1.00 -61.63 315.44 2.51 -59.13 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.15 Total: 27.22 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 3.45 Total: -45.41 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.80 Total: -87.41 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.71 Total: 46.48 kcal Total: -61.63 2.51 -59.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128996823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.247 kcal (2) G-P(sol) polarization free energy of solvation -61.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds