Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46915 * 2 1 4 4 C 1.36883 * 126.39569 * 266.14728 * 3 2 1 5 5 C 1.34673 * 106.81366 * 180.25833 * 4 3 2 6 6 N 1.34128 * 108.02315 * 359.74600 * 5 4 3 7 7 C 1.30494 * 109.25350 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.65105 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47080 * 265.04687 * 8 7 6 10 10 C 1.46904 * 111.00322 * 69.70529 * 9 8 7 11 11 C 1.46901 * 110.99919 * 193.65605 * 9 8 7 12 12 H 1.09002 * 109.47295 * 299.99956 * 11 9 8 13 13 C 1.53003 * 109.46813 * 60.00065 * 11 9 8 14 14 C 1.50701 * 109.47410 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99707 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00153 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00235 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00113 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47568 * 89.99913 * 18 16 14 20 20 H 1.48498 * 109.47327 * 210.00093 * 18 16 14 21 21 H 1.48502 * 109.47327 * 329.99720 * 18 16 14 22 22 H 1.09001 * 109.46821 * 184.85846 * 1 2 3 23 23 H 1.09000 * 109.46961 * 304.86045 * 1 2 3 24 24 H 1.09004 * 109.46722 * 64.85550 * 1 2 3 25 25 H 1.08999 * 109.46944 * 239.99773 * 2 1 3 26 26 H 1.09002 * 109.47184 * 120.00062 * 2 1 3 27 27 H 1.07998 * 126.59625 * 359.97438 * 4 3 2 28 28 H 1.08004 * 125.98392 * 179.72361 * 5 4 3 29 29 H 1.08996 * 109.47084 * 145.04355 * 8 7 6 30 30 H 1.09005 * 109.46778 * 25.04667 * 8 7 6 31 31 H 1.09000 * 109.47039 * 190.12265 * 10 9 8 32 32 H 1.08999 * 109.46967 * 310.11652 * 10 9 8 33 33 H 1.08998 * 109.47112 * 70.11590 * 10 9 8 34 34 H 1.08992 * 109.47737 * 60.00076 * 13 11 9 35 35 H 1.08995 * 109.47240 * 299.99596 * 13 11 9 36 36 H 1.09004 * 109.47291 * 180.02562 * 13 11 9 37 37 H 0.96993 * 120.00450 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3589 2.1223 -1.0993 5 6 2.7586 3.3268 -0.6486 6 7 2.6595 3.3231 0.6890 7 6 2.2130 2.1624 1.0842 8 6 1.9634 1.7579 2.5144 9 7 3.1413 1.0524 3.0363 10 6 4.2736 1.9727 3.2066 11 6 2.8278 0.3649 4.2961 12 1 2.5008 1.0947 5.0368 13 6 1.7117 -0.6540 4.0569 14 6 4.0572 -0.3465 4.7997 15 1 4.9793 -0.2928 4.2402 16 6 4.0047 -1.0658 5.9748 17 7 2.8816 -1.1315 6.6560 18 14 5.5287 -1.9469 6.5995 19 1 6.3006 -1.0357 7.4821 20 1 5.1242 -3.1530 7.3656 21 1 6.3731 -2.3527 5.4472 22 1 -0.3633 -1.0240 0.0870 23 1 -0.3633 0.5874 0.8433 24 1 -0.3633 0.4367 -0.9303 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3194 1.8012 -2.1297 28 1 3.0997 4.1510 -1.2576 29 1 1.0959 1.0995 2.5596 30 1 1.7762 2.6473 3.1161 31 1 5.1771 1.4015 3.4200 32 1 4.4151 2.5478 2.2916 33 1 4.0688 2.6515 4.0345 34 1 2.0385 -1.3839 3.3163 35 1 0.8224 -0.1400 3.6925 36 1 1.4787 -1.1639 4.9917 37 1 2.8447 -1.6372 7.4829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129697609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = 67.658507 kcal Electronic energy + Delta-G solvation = -17474.397380 eV Core-core repulsion = 14867.140156 eV Total energy + Delta-G solvation = -2607.257225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76178 -36.93509 -34.72054 -32.91262 -30.28063 -29.79715 -28.91839 -26.68513 -24.68653 -23.66366 -23.06317 -21.01591 -19.81700 -19.00082 -16.79767 -16.19229 -15.55199 -14.99000 -14.59509 -14.08403 -13.78437 -13.68480 -13.44507 -13.27878 -12.50242 -12.38971 -12.08045 -12.02292 -11.78072 -11.26796 -11.08169 -10.99101 -10.73125 -10.65604 -10.17758 -10.09177 -9.88786 -9.59059 -9.27828 -8.93633 -8.46541 -8.04379 -7.23386 -6.03781 -4.08031 2.36550 3.09992 3.29525 3.36100 3.39860 3.47947 4.39872 4.79368 4.81844 5.01240 5.06158 5.23883 5.31814 5.35104 5.53989 5.59960 5.72867 5.87281 5.96886 6.09901 6.15668 6.35509 6.52661 6.65741 6.76088 6.88521 6.95037 7.07924 7.09629 7.44781 7.52946 7.65001 7.80997 8.13241 8.27861 8.49728 8.54698 8.98494 9.57199 11.03145 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.006648 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.406867 B = 4211.050752 C = 4579.269785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.444 5.444 4 C -0.071 4.071 5 C -0.034 4.034 6 N -0.499 5.499 7 C 0.239 3.761 8 C 0.125 3.875 9 N -0.534 5.534 10 C 0.041 3.959 11 C 0.212 3.788 12 H 0.002 0.998 13 C -0.134 4.134 14 C -0.502 4.502 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.016 0.984 34 H 0.033 0.967 35 H 0.008 0.992 36 H 0.087 0.913 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 2.090 -12.656 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.126 5.126 4 C -0.205 4.205 5 C -0.183 4.183 6 N -0.218 5.218 7 C -0.024 4.024 8 C -0.004 4.004 9 N -0.260 5.260 10 C -0.108 4.108 11 C 0.106 3.894 12 H 0.019 0.981 13 C -0.192 4.192 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.106 0.894 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.030 2.134 -12.307 13.125 hybrid contribution 0.398 -0.567 0.261 0.740 sum -3.633 1.567 -12.047 12.680 Atomic orbital electron populations 1.22144 0.94500 1.03136 1.02641 1.21903 0.95159 0.80183 1.05303 1.45396 1.48235 1.12392 1.06556 1.22556 1.10974 0.94395 0.92542 1.22182 1.07157 0.97359 0.91567 1.70269 1.19472 1.20377 1.11688 1.23377 1.01316 0.86648 0.91104 1.20492 0.96063 0.98087 0.85806 1.62140 1.03698 1.27465 1.32678 1.22183 0.95115 0.94666 0.98819 1.19295 0.95194 0.91654 0.83231 0.98086 1.21894 0.95426 0.99473 1.02410 1.21130 0.96146 1.30531 1.06251 0.91860 1.24917 0.96171 0.96506 0.96593 1.69879 1.25314 1.42145 1.15982 0.86518 0.83051 0.79129 0.78843 1.20745 1.21272 1.19902 0.90561 0.91753 0.92425 0.89573 0.87432 0.81635 0.82012 0.89359 0.92785 0.91254 0.92931 0.96526 0.94744 0.97365 0.89396 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.10 1.21 6.50 -4.04 -0.03 1.18 16 3 N -0.44 -6.76 2.75 -113.90 -0.31 -7.07 16 4 C -0.07 -0.98 11.58 -16.56 -0.19 -1.17 16 5 C -0.03 -0.52 11.87 -17.81 -0.21 -0.73 16 6 N -0.50 -9.31 10.59 -10.81 -0.11 -9.42 16 7 C 0.24 4.31 6.58 -155.42 -1.02 3.29 16 8 C 0.13 2.39 4.90 -4.98 -0.02 2.37 16 9 N -0.53 -11.59 4.59 -237.72 -1.09 -12.68 16 10 C 0.04 0.87 9.02 60.07 0.54 1.41 16 11 C 0.21 5.23 2.05 -68.86 -0.14 5.09 16 12 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 13 C -0.13 -3.08 8.78 37.16 0.33 -2.75 16 14 C -0.50 -13.55 7.99 -34.44 -0.28 -13.83 16 15 H 0.06 1.72 6.42 -52.48 -0.34 1.39 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.76 7.80 -51.93 -0.41 0.36 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.11 1.56 7.91 -51.93 -0.41 1.15 16 27 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 29 H 0.09 1.59 5.20 -51.93 -0.27 1.32 16 30 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.07 1.53 6.48 -51.93 -0.34 1.20 16 32 H 0.05 1.09 6.66 -51.93 -0.35 0.74 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.01 0.15 6.13 -51.93 -0.32 -0.17 16 36 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -29.91 298.89 -7.82 -37.73 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.67 Total: 0.18 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.74 Total: -5.00 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.89 Total: -53.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.91 -7.82 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129697609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.390 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds