Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46915 * 2 1 4 4 C 1.36883 * 126.39569 * 266.14728 * 3 2 1 5 5 C 1.34673 * 106.81366 * 180.25833 * 4 3 2 6 6 N 1.34128 * 108.02315 * 359.74600 * 5 4 3 7 7 C 1.30494 * 109.25350 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.65105 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47080 * 265.04687 * 8 7 6 10 10 C 1.46904 * 111.00322 * 69.70529 * 9 8 7 11 11 C 1.46901 * 110.99919 * 193.65605 * 9 8 7 12 12 H 1.09002 * 109.47295 * 299.99956 * 11 9 8 13 13 C 1.53003 * 109.46813 * 60.00065 * 11 9 8 14 14 C 1.50701 * 109.47410 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99707 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00153 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00235 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00113 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47568 * 89.99913 * 18 16 14 20 20 H 1.48498 * 109.47327 * 210.00093 * 18 16 14 21 21 H 1.48502 * 109.47327 * 329.99720 * 18 16 14 22 22 H 1.09001 * 109.46821 * 184.85846 * 1 2 3 23 23 H 1.09000 * 109.46961 * 304.86045 * 1 2 3 24 24 H 1.09004 * 109.46722 * 64.85550 * 1 2 3 25 25 H 1.08999 * 109.46944 * 239.99773 * 2 1 3 26 26 H 1.09002 * 109.47184 * 120.00062 * 2 1 3 27 27 H 1.07998 * 126.59625 * 359.97438 * 4 3 2 28 28 H 1.08004 * 125.98392 * 179.72361 * 5 4 3 29 29 H 1.08996 * 109.47084 * 145.04355 * 8 7 6 30 30 H 1.09005 * 109.46778 * 25.04667 * 8 7 6 31 31 H 1.09000 * 109.47039 * 190.12265 * 10 9 8 32 32 H 1.08999 * 109.46967 * 310.11652 * 10 9 8 33 33 H 1.08998 * 109.47112 * 70.11590 * 10 9 8 34 34 H 1.08992 * 109.47737 * 60.00076 * 13 11 9 35 35 H 1.08995 * 109.47240 * 299.99596 * 13 11 9 36 36 H 1.09004 * 109.47291 * 180.02562 * 13 11 9 37 37 H 0.96993 * 120.00450 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3589 2.1223 -1.0993 5 6 2.7586 3.3268 -0.6486 6 7 2.6595 3.3231 0.6890 7 6 2.2130 2.1624 1.0842 8 6 1.9634 1.7579 2.5144 9 7 3.1413 1.0524 3.0363 10 6 4.2736 1.9727 3.2066 11 6 2.8278 0.3649 4.2961 12 1 2.5008 1.0947 5.0368 13 6 1.7117 -0.6540 4.0569 14 6 4.0572 -0.3465 4.7997 15 1 4.9793 -0.2928 4.2402 16 6 4.0047 -1.0658 5.9748 17 7 2.8816 -1.1315 6.6560 18 14 5.5287 -1.9469 6.5995 19 1 6.3006 -1.0357 7.4821 20 1 5.1242 -3.1530 7.3656 21 1 6.3731 -2.3527 5.4472 22 1 -0.3633 -1.0240 0.0870 23 1 -0.3633 0.5874 0.8433 24 1 -0.3633 0.4367 -0.9303 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3194 1.8012 -2.1297 28 1 3.0997 4.1510 -1.2576 29 1 1.0959 1.0995 2.5596 30 1 1.7762 2.6473 3.1161 31 1 5.1771 1.4015 3.4200 32 1 4.4151 2.5478 2.2916 33 1 4.0688 2.6515 4.0345 34 1 2.0385 -1.3839 3.3163 35 1 0.8224 -0.1400 3.6925 36 1 1.4787 -1.1639 4.9917 37 1 2.8447 -1.6372 7.4829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129697609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = 49.266451 kcal Electronic energy + Delta-G solvation = -17475.194920 eV Core-core repulsion = 14867.140156 eV Total energy + Delta-G solvation = -2608.054764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.96650 -38.72100 -35.78887 -34.89472 -31.82817 -30.97040 -30.58951 -28.27925 -26.58500 -25.07979 -24.39428 -22.16785 -21.60193 -20.37628 -18.40045 -17.81629 -17.19664 -16.37591 -16.09418 -15.58277 -15.29941 -15.20822 -14.72542 -14.41006 -14.24593 -13.81820 -13.50078 -13.42272 -12.98620 -12.95601 -12.74247 -12.62761 -12.46670 -12.20268 -12.04598 -11.98931 -11.76967 -10.93283 -10.83178 -10.53014 -10.47762 -9.27602 -9.02533 -8.11393 -6.22910 1.17532 1.42404 1.43614 1.53796 1.99657 2.21727 2.43600 3.17090 3.32853 3.72538 3.86928 3.94612 4.14851 4.31041 4.45238 4.47862 4.58707 4.60557 4.70238 4.78758 4.88675 4.89690 4.94677 5.01907 5.07301 5.19918 5.21598 5.49558 5.52617 5.71867 5.75369 5.96333 6.23223 6.27067 6.37952 6.63813 6.89786 7.27103 7.46091 8.94464 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.006648 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.406867 B = 4211.050752 C = 4579.269785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.442 5.442 4 C -0.049 4.049 5 C -0.059 4.059 6 N -0.530 5.530 7 C 0.208 3.792 8 C 0.134 3.866 9 N -0.532 5.532 10 C 0.051 3.949 11 C 0.216 3.784 12 H -0.036 1.036 13 C -0.119 4.119 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.270 1.270 22 H 0.094 0.906 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.211 0.789 28 H 0.186 0.814 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.005 0.995 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.062 0.938 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 1.313 -14.807 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 N -0.123 5.123 4 C -0.183 4.183 5 C -0.206 4.206 6 N -0.250 5.250 7 C -0.055 4.055 8 C 0.005 3.995 9 N -0.257 5.257 10 C -0.097 4.097 11 C 0.110 3.890 12 H -0.018 1.018 13 C -0.177 4.177 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.184 4.184 17 N -0.558 5.558 18 Si 0.784 3.216 19 H -0.205 1.205 20 H -0.206 1.206 21 H -0.195 1.195 22 H 0.113 0.887 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.227 0.773 28 H 0.203 0.797 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.013 1.353 -14.466 15.073 hybrid contribution 0.367 -0.273 0.836 0.953 sum -3.646 1.080 -13.629 14.150 Atomic orbital electron populations 1.22102 0.92939 1.04121 1.02553 1.22105 0.96423 0.78764 1.05619 1.45597 1.47407 1.13141 1.06204 1.23247 1.07926 0.93339 0.93758 1.22713 1.08128 0.99197 0.90607 1.70176 1.19931 1.21077 1.13849 1.22902 1.04001 0.87556 0.91029 1.20342 0.95069 0.97282 0.86851 1.62087 1.04808 1.28051 1.30761 1.22055 0.94732 0.94235 0.98718 1.19120 0.95013 0.91238 0.83640 1.01808 1.21668 0.95879 0.98978 1.01210 1.21371 0.96686 1.30999 1.06718 0.92564 1.25643 0.98845 0.97162 0.96737 1.69998 1.26915 1.42621 1.16232 0.85560 0.79735 0.78074 0.78273 1.20508 1.20632 1.19460 0.88722 0.93601 0.91025 0.86547 0.89828 0.77279 0.79662 0.88583 0.94186 0.92280 0.92104 0.97600 0.94321 0.94811 0.91916 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.24 71.99 0.74 -2.19 16 2 C 0.09 2.06 6.50 86.38 0.56 2.62 16 3 N -0.44 -12.45 2.75 -514.27 -1.41 -13.87 16 4 C -0.05 -1.17 11.58 83.09 0.96 -0.21 16 5 C -0.06 -1.67 11.87 83.52 0.99 -0.68 16 6 N -0.53 -19.40 10.59 -188.12 -1.99 -21.39 16 7 C 0.21 7.36 6.58 138.13 0.91 8.27 16 8 C 0.13 5.17 4.90 85.56 0.42 5.59 16 9 N -0.53 -23.44 4.59 -906.02 -4.15 -27.60 16 10 C 0.05 2.25 9.02 127.69 1.15 3.40 16 11 C 0.22 10.95 2.05 44.17 0.09 11.04 16 12 H -0.04 -2.03 8.14 -2.39 -0.02 -2.05 16 13 C -0.12 -5.52 8.78 71.98 0.63 -4.89 16 14 C -0.52 -28.48 7.99 25.60 0.20 -28.28 16 15 H 0.06 3.10 6.42 -2.91 -0.02 3.09 16 16 C 0.02 0.82 5.30 84.65 0.45 1.27 16 17 N -0.92 -52.04 11.32 21.45 0.24 -51.79 16 18 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.01 7.80 -2.39 -0.02 0.99 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.31 7.91 -2.39 -0.02 2.29 16 27 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.10 3.46 5.20 -2.39 -0.01 3.45 16 30 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 31 H 0.06 2.67 6.48 -2.39 -0.02 2.65 16 32 H 0.06 2.55 6.66 -2.39 -0.02 2.53 16 33 H 0.01 0.25 8.12 -2.39 -0.02 0.23 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.03 1.34 6.13 -2.39 -0.01 1.33 16 36 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 37 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -64.96 298.89 2.85 -62.11 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.04 Total: 11.09 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 7.11 Total: -4.06 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -7.32 Total: -114.64 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.96 2.85 -62.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129697609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.376 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds