Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46969 * 2 1 4 4 C 1.36875 * 126.39570 * 265.02644 * 3 2 1 5 5 C 1.34676 * 106.81636 * 180.02562 * 4 3 2 6 6 N 1.34121 * 108.01912 * 0.22274 * 5 4 3 7 7 C 1.30500 * 109.25634 * 359.62322 * 6 5 4 8 8 C 1.50709 * 125.64989 * 180.14704 * 7 6 5 9 9 N 1.46899 * 109.46931 * 270.27202 * 8 7 6 10 10 C 1.46897 * 110.99649 * 66.04707 * 9 8 7 11 11 C 1.46900 * 110.99811 * 190.00061 * 9 8 7 12 12 H 1.09000 * 109.46987 * 54.99938 * 11 9 8 13 13 C 1.53002 * 109.47061 * 295.00043 * 11 9 8 14 14 C 1.50700 * 109.47089 * 175.00043 * 11 9 8 15 15 H 1.08000 * 119.99706 * 114.88973 * 14 11 9 16 16 C 1.37869 * 119.99903 * 294.88917 * 14 11 9 17 17 N 1.31517 * 120.00036 * 176.33231 * 16 14 11 18 18 Si 1.86798 * 120.00074 * 356.33608 * 16 14 11 19 19 H 1.48497 * 109.47479 * 85.98494 * 18 16 14 20 20 H 1.48504 * 109.46859 * 205.98319 * 18 16 14 21 21 H 1.48492 * 109.47075 * 325.98018 * 18 16 14 22 22 H 1.08996 * 109.47012 * 60.00302 * 1 2 3 23 23 H 1.09004 * 109.46621 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47350 * 300.00056 * 1 2 3 25 25 H 1.09000 * 109.47826 * 240.00310 * 2 1 3 26 26 H 1.09001 * 109.47457 * 119.99858 * 2 1 3 27 27 H 1.08000 * 126.59340 * 359.97438 * 4 3 2 28 28 H 1.07999 * 125.98875 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47210 * 30.27199 * 8 7 6 30 30 H 1.08997 * 109.46838 * 150.26976 * 8 7 6 31 31 H 1.09002 * 109.47263 * 60.00144 * 10 9 8 32 32 H 1.09011 * 109.46668 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47776 * 299.99383 * 10 9 8 34 34 H 1.08998 * 109.47228 * 294.66673 * 13 11 9 35 35 H 1.08998 * 109.47268 * 54.66187 * 13 11 9 36 36 H 1.09005 * 109.47227 * 174.66382 * 13 11 9 37 37 H 0.96995 * 120.00489 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 7 2.6488 3.3269 0.6882 7 6 2.1970 2.1680 1.0829 8 6 1.9251 1.7714 2.5112 9 7 3.1375 1.1823 3.0951 10 6 4.2072 2.1827 3.2077 11 6 2.8498 0.5700 4.3990 12 1 2.0416 -0.1533 4.2904 13 6 2.4318 1.6567 5.3916 14 6 4.0839 -0.1285 4.9092 15 1 4.5736 0.2255 5.8043 16 6 4.5877 -1.2194 4.2332 17 7 5.7046 -1.7846 4.6366 18 14 3.6840 -1.8946 2.7443 19 1 4.1069 -1.1522 1.5298 20 1 4.0060 -3.3351 2.5811 21 1 2.2206 -1.7334 2.9385 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3585 1.7873 -2.1264 28 1 3.1130 4.1464 -1.2563 29 1 1.6371 2.6527 3.0845 30 1 1.1169 1.0406 2.5378 31 1 3.8738 3.0008 3.8462 32 1 5.0930 1.7201 3.6433 33 1 4.4486 2.5697 2.2177 34 1 3.2725 2.3265 5.5725 35 1 1.5975 2.2241 4.9791 36 1 2.1275 1.1937 6.3304 37 1 6.0593 -2.5519 4.1608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129697825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = 68.996274 kcal Electronic energy + Delta-G solvation = -17873.607787 eV Core-core repulsion = 15266.408573 eV Total energy + Delta-G solvation = -2607.199215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.79771 -37.29089 -34.79492 -32.55589 -30.77705 -29.92640 -28.73727 -26.49709 -25.50236 -23.84332 -23.09137 -21.04728 -19.58201 -18.88663 -16.98272 -16.57748 -15.60855 -14.88650 -14.54855 -14.38596 -13.99796 -13.55419 -13.38387 -13.23577 -12.82992 -12.64078 -12.35296 -12.08221 -11.87949 -11.45184 -11.29434 -10.97780 -10.96359 -10.63562 -10.37040 -9.97736 -9.67185 -9.60897 -9.30811 -9.15191 -8.56657 -8.08535 -7.27245 -6.05885 -4.10980 2.33493 3.04711 3.37111 3.41613 3.48199 3.50152 4.52397 4.71463 4.74040 4.93902 4.98756 5.10274 5.26824 5.40646 5.49060 5.59093 5.63624 5.80013 5.87705 6.01540 6.06504 6.18964 6.31597 6.41670 6.47771 6.56985 6.64858 6.86280 7.04650 7.12305 7.24375 7.47521 7.61614 7.99446 8.21113 8.46614 8.56285 8.96392 9.58784 11.04476 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023700 B = 0.010182 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.153646 B = 2749.195936 C = 3194.450180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.446 5.446 4 C -0.070 4.070 5 C -0.032 4.032 6 N -0.494 5.494 7 C 0.236 3.764 8 C 0.124 3.876 9 N -0.534 5.534 10 C 0.042 3.958 11 C 0.170 3.830 12 H 0.043 0.957 13 C -0.165 4.165 14 C -0.508 4.508 15 H 0.073 0.927 16 C 0.084 3.916 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.309 1.309 21 H -0.272 1.272 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.016 0.984 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 4.170 -10.385 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.128 5.128 4 C -0.203 4.203 5 C -0.181 4.181 6 N -0.213 5.213 7 C -0.028 4.028 8 C -0.005 4.005 9 N -0.260 5.260 10 C -0.106 4.106 11 C 0.065 3.935 12 H 0.061 0.939 13 C -0.224 4.224 14 C -0.547 4.547 15 H 0.091 0.909 16 C -0.120 4.120 17 N -0.535 5.535 18 Si 0.739 3.261 19 H -0.197 1.197 20 H -0.237 1.237 21 H -0.198 1.198 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.560 4.161 -10.210 14.592 hybrid contribution -0.708 -0.494 -1.034 1.347 sum -10.268 3.666 -11.243 15.662 Atomic orbital electron populations 1.22148 0.94215 1.03092 1.02959 1.21965 0.95392 0.80514 1.05168 1.45381 1.48279 1.12251 1.06915 1.22562 1.10773 0.94396 0.92571 1.22187 1.07085 0.97219 0.91594 1.70259 1.18999 1.20398 1.11627 1.23351 1.01650 0.86750 0.91001 1.20476 0.95327 0.98788 0.85933 1.62767 1.05019 1.30641 1.27546 1.22111 0.96015 0.92764 0.99692 1.19901 0.97944 0.92203 0.83468 0.93918 1.22293 0.99451 1.00041 1.00603 1.20874 1.10348 1.12149 1.11291 0.90867 1.24993 0.94246 0.95996 0.96751 1.69946 1.20008 1.22676 1.40860 0.86338 0.80147 0.75427 0.84234 1.19727 1.23720 1.19805 0.92043 0.90568 0.91679 0.89304 0.88349 0.81575 0.81886 0.92197 0.90645 0.96573 0.90150 0.93154 0.92980 0.95108 0.93042 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.09 1.29 6.40 -4.04 -0.03 1.27 16 3 N -0.45 -7.26 2.75 -113.90 -0.31 -7.58 16 4 C -0.07 -1.01 11.58 -16.56 -0.19 -1.21 16 5 C -0.03 -0.51 11.87 -17.81 -0.21 -0.72 16 6 N -0.49 -9.35 10.49 -10.81 -0.11 -9.46 16 7 C 0.24 4.36 6.54 -155.41 -1.02 3.34 16 8 C 0.12 2.32 4.56 -4.97 -0.02 2.30 16 9 N -0.53 -11.58 2.99 -237.72 -0.71 -12.29 16 10 C 0.04 0.92 8.61 60.06 0.52 1.44 16 11 C 0.17 3.87 1.70 -68.86 -0.12 3.75 16 12 H 0.04 0.99 6.66 -51.93 -0.35 0.64 16 13 C -0.16 -3.27 8.39 37.16 0.31 -2.96 16 14 C -0.51 -13.87 7.74 -34.44 -0.27 -14.14 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 18 Si 0.91 22.25 24.68 -169.99 -4.19 18.06 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.31 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.27 -6.21 6.48 56.52 0.37 -5.84 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.10 1.64 6.06 -51.93 -0.31 1.33 16 27 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.06 1.09 6.82 -51.93 -0.35 0.74 16 30 H 0.08 1.30 7.22 -51.93 -0.37 0.92 16 31 H 0.02 0.33 6.63 -51.93 -0.34 -0.02 16 32 H 0.08 1.94 6.99 -51.92 -0.36 1.58 16 33 H 0.05 1.10 6.71 -51.93 -0.35 0.75 16 34 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 35 H 0.03 0.53 6.50 -51.93 -0.34 0.20 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 291.68 15.07 4.40 4.40 Total: -1.00 -31.38 291.68 -6.56 -37.94 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.66 Total: 1.44 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.74 Total: -6.10 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.36 Total: -55.73 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.19 Total: 18.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.38 -6.56 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129697825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.936 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds