Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46969 * 2 1 4 4 C 1.36875 * 126.39570 * 265.02644 * 3 2 1 5 5 C 1.34676 * 106.81636 * 180.02562 * 4 3 2 6 6 N 1.34121 * 108.01912 * 0.22274 * 5 4 3 7 7 C 1.30500 * 109.25634 * 359.62322 * 6 5 4 8 8 C 1.50709 * 125.64989 * 180.14704 * 7 6 5 9 9 N 1.46899 * 109.46931 * 270.27202 * 8 7 6 10 10 C 1.46897 * 110.99649 * 66.04707 * 9 8 7 11 11 C 1.46900 * 110.99811 * 190.00061 * 9 8 7 12 12 H 1.09000 * 109.46987 * 54.99938 * 11 9 8 13 13 C 1.53002 * 109.47061 * 295.00043 * 11 9 8 14 14 C 1.50700 * 109.47089 * 175.00043 * 11 9 8 15 15 H 1.08000 * 119.99706 * 114.88973 * 14 11 9 16 16 C 1.37869 * 119.99903 * 294.88917 * 14 11 9 17 17 N 1.31517 * 120.00036 * 176.33231 * 16 14 11 18 18 Si 1.86798 * 120.00074 * 356.33608 * 16 14 11 19 19 H 1.48497 * 109.47479 * 85.98494 * 18 16 14 20 20 H 1.48504 * 109.46859 * 205.98319 * 18 16 14 21 21 H 1.48492 * 109.47075 * 325.98018 * 18 16 14 22 22 H 1.08996 * 109.47012 * 60.00302 * 1 2 3 23 23 H 1.09004 * 109.46621 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47350 * 300.00056 * 1 2 3 25 25 H 1.09000 * 109.47826 * 240.00310 * 2 1 3 26 26 H 1.09001 * 109.47457 * 119.99858 * 2 1 3 27 27 H 1.08000 * 126.59340 * 359.97438 * 4 3 2 28 28 H 1.07999 * 125.98875 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47210 * 30.27199 * 8 7 6 30 30 H 1.08997 * 109.46838 * 150.26976 * 8 7 6 31 31 H 1.09002 * 109.47263 * 60.00144 * 10 9 8 32 32 H 1.09011 * 109.46668 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47776 * 299.99383 * 10 9 8 34 34 H 1.08998 * 109.47228 * 294.66673 * 13 11 9 35 35 H 1.08998 * 109.47268 * 54.66187 * 13 11 9 36 36 H 1.09005 * 109.47227 * 174.66382 * 13 11 9 37 37 H 0.96995 * 120.00489 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 7 2.6488 3.3269 0.6882 7 6 2.1970 2.1680 1.0829 8 6 1.9251 1.7714 2.5112 9 7 3.1375 1.1823 3.0951 10 6 4.2072 2.1827 3.2077 11 6 2.8498 0.5700 4.3990 12 1 2.0416 -0.1533 4.2904 13 6 2.4318 1.6567 5.3916 14 6 4.0839 -0.1285 4.9092 15 1 4.5736 0.2255 5.8043 16 6 4.5877 -1.2194 4.2332 17 7 5.7046 -1.7846 4.6366 18 14 3.6840 -1.8946 2.7443 19 1 4.1069 -1.1522 1.5298 20 1 4.0060 -3.3351 2.5811 21 1 2.2206 -1.7334 2.9385 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3585 1.7873 -2.1264 28 1 3.1130 4.1464 -1.2563 29 1 1.6371 2.6527 3.0845 30 1 1.1169 1.0406 2.5378 31 1 3.8738 3.0008 3.8462 32 1 5.0930 1.7201 3.6433 33 1 4.4486 2.5697 2.2177 34 1 3.2725 2.3265 5.5725 35 1 1.5975 2.2241 4.9791 36 1 2.1275 1.1937 6.3304 37 1 6.0593 -2.5519 4.1608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129697825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = 48.595997 kcal Electronic energy + Delta-G solvation = -17874.492410 eV Core-core repulsion = 15266.408573 eV Total energy + Delta-G solvation = -2608.083837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.00894 -39.01682 -35.88161 -34.60279 -32.41226 -31.01125 -30.25554 -28.03099 -27.41967 -25.22860 -24.41658 -22.22266 -21.25198 -20.33049 -18.89148 -17.92004 -17.10412 -16.39959 -16.05132 -15.82077 -15.42893 -15.06213 -14.80543 -14.57613 -14.48137 -14.16775 -13.53491 -13.44863 -13.08678 -12.98815 -12.83952 -12.70691 -12.38092 -12.33335 -12.08445 -11.84195 -11.63396 -11.14206 -10.86943 -10.73567 -10.52163 -9.32723 -8.94328 -8.24006 -6.33387 1.13104 1.37769 1.49814 1.55952 1.92946 2.19682 2.47756 3.02863 3.48183 3.68769 3.73640 3.89860 4.04599 4.27999 4.35225 4.43276 4.47046 4.55887 4.62966 4.71491 4.73289 4.76821 4.80748 4.86504 4.90321 5.14434 5.15395 5.31846 5.45020 5.47166 5.63105 5.92782 6.05388 6.25542 6.44895 6.53852 6.80843 7.23347 7.40128 8.89450 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023700 B = 0.010182 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.153646 B = 2749.195936 C = 3194.450180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 N -0.448 5.448 4 C -0.053 4.053 5 C -0.056 4.056 6 N -0.522 5.522 7 C 0.205 3.795 8 C 0.131 3.869 9 N -0.544 5.544 10 C 0.059 3.941 11 C 0.174 3.826 12 H 0.050 0.950 13 C -0.158 4.158 14 C -0.508 4.508 15 H 0.032 0.968 16 C 0.026 3.974 17 N -0.949 5.949 18 Si 0.971 3.029 19 H -0.274 1.274 20 H -0.314 1.314 21 H -0.242 1.242 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.207 0.793 28 H 0.187 0.813 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 4.305 -12.834 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.038 4.038 3 N -0.130 5.130 4 C -0.186 4.186 5 C -0.204 4.204 6 N -0.242 5.242 7 C -0.057 4.057 8 C 0.002 3.998 9 N -0.270 5.270 10 C -0.089 4.089 11 C 0.068 3.932 12 H 0.068 0.932 13 C -0.217 4.217 14 C -0.546 4.546 15 H 0.050 0.950 16 C -0.172 4.172 17 N -0.589 5.589 18 Si 0.799 3.201 19 H -0.200 1.200 20 H -0.242 1.242 21 H -0.166 1.166 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.090 0.910 27 H 0.224 0.776 28 H 0.204 0.796 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.053 4.307 -12.645 17.992 hybrid contribution 0.092 -0.453 -0.288 0.545 sum -11.962 3.854 -12.933 18.033 Atomic orbital electron populations 1.22111 0.91900 1.04509 1.03093 1.22182 0.97330 0.79255 1.05005 1.45610 1.47707 1.12941 1.06781 1.23219 1.08127 0.93534 0.93760 1.22705 1.07915 0.98908 0.90848 1.70179 1.19398 1.21157 1.13504 1.23147 1.03802 0.87484 0.91316 1.20416 0.93854 0.99160 0.86367 1.62461 1.06527 1.31286 1.26743 1.21867 0.94979 0.92727 0.99376 1.19737 0.95653 0.93042 0.84729 0.93201 1.22185 1.00007 0.99222 1.00256 1.21107 1.11390 1.12244 1.09873 0.95004 1.25855 0.94934 0.96541 0.99901 1.70094 1.22177 1.23710 1.42871 0.85351 0.80580 0.74079 0.80096 1.19986 1.24240 1.16589 0.90794 0.88508 0.92645 0.86915 0.91025 0.77587 0.79644 0.91801 0.89037 0.95589 0.93602 0.93256 0.94111 0.92188 0.92574 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.24 71.98 0.74 -2.09 16 2 C 0.08 2.03 6.40 86.38 0.55 2.59 16 3 N -0.45 -13.13 2.75 -514.27 -1.41 -14.54 16 4 C -0.05 -1.33 11.58 83.09 0.96 -0.37 16 5 C -0.06 -1.62 11.87 83.53 0.99 -0.63 16 6 N -0.52 -18.81 10.49 -188.13 -1.97 -20.79 16 7 C 0.21 7.13 6.54 138.13 0.90 8.04 16 8 C 0.13 4.59 4.56 85.56 0.39 4.98 16 9 N -0.54 -22.97 2.99 -906.02 -2.71 -25.68 16 10 C 0.06 2.57 8.61 127.69 1.10 3.67 16 11 C 0.17 7.77 1.70 44.17 0.07 7.84 16 12 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 13 C -0.16 -6.07 8.39 71.98 0.60 -5.46 16 14 C -0.51 -28.37 7.74 25.60 0.20 -28.17 16 15 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 16 C 0.03 1.52 5.47 84.65 0.46 1.98 16 17 N -0.95 -59.46 13.96 21.44 0.30 -59.16 16 18 Si 0.97 45.85 24.68 68.60 1.69 47.55 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.24 -10.08 6.48 99.48 0.64 -9.44 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.33 8.14 -2.38 -0.02 1.32 16 24 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 25 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.15 6.06 -2.39 -0.01 2.13 16 27 H 0.21 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.06 2.17 6.82 -2.39 -0.02 2.16 16 30 H 0.09 2.87 7.22 -2.39 -0.02 2.85 16 31 H 0.03 1.06 6.63 -2.39 -0.02 1.04 16 32 H 0.05 2.29 6.99 -2.38 -0.02 2.27 16 33 H 0.05 2.15 6.71 -2.39 -0.02 2.13 16 34 H 0.04 1.63 6.78 -2.39 -0.02 1.62 16 35 H 0.06 1.95 6.50 -2.39 -0.02 1.93 16 36 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.72 291.68 3.84 -65.87 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.98 Total: 14.38 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.98 Total: -7.63 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -5.80 Total: -120.17 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.69 Total: 47.55 kcal Total: -69.72 3.84 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129697825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.470 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds