Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46992 * 2 1 4 4 N 1.40089 * 126.03784 * 275.46375 * 3 2 1 5 5 C 1.30831 * 108.20473 * 180.16610 * 4 3 2 6 6 C 1.39874 * 108.20401 * 359.59573 * 5 4 3 7 7 C 1.34942 * 126.03731 * 95.17465 * 3 2 1 8 8 C 1.50698 * 126.12924 * 0.03533 * 7 3 2 9 9 N 1.46900 * 109.47097 * 84.36053 * 8 7 3 10 10 C 1.46902 * 110.99723 * 66.73902 * 9 8 7 11 11 C 1.46908 * 111.00169 * 190.68975 * 9 8 7 12 12 H 1.09001 * 109.46839 * 300.00502 * 11 9 8 13 13 C 1.52999 * 109.46564 * 60.00111 * 11 9 8 14 14 C 1.50695 * 109.46956 * 180.02562 * 11 9 8 15 15 H 1.08002 * 120.00244 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99813 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99832 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00062 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47024 * 60.00022 * 18 16 14 20 20 H 1.48492 * 109.47217 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46901 * 299.99996 * 18 16 14 22 22 H 1.08996 * 109.47388 * 64.91820 * 1 2 3 23 23 H 1.08995 * 109.46818 * 184.91968 * 1 2 3 24 24 H 1.09000 * 109.46896 * 304.92058 * 1 2 3 25 25 H 1.09000 * 109.46886 * 240.00446 * 2 1 3 26 26 H 1.08993 * 109.47190 * 120.00057 * 2 1 3 27 27 H 1.08003 * 125.89874 * 179.84823 * 5 4 3 28 28 H 1.07995 * 126.04045 * 180.28781 * 6 5 4 29 29 H 1.09001 * 109.47833 * 204.36877 * 8 7 3 30 30 H 1.09001 * 109.46963 * 324.36356 * 8 7 3 31 31 H 1.09004 * 109.46950 * 65.53217 * 10 9 8 32 32 H 1.09004 * 109.47026 * 185.52852 * 10 9 8 33 33 H 1.08996 * 109.47243 * 305.53408 * 10 9 8 34 34 H 1.09001 * 109.47223 * 60.00626 * 13 11 9 35 35 H 1.09003 * 109.46646 * 179.97438 * 13 11 9 36 36 H 1.08996 * 109.47622 * 300.00078 * 13 11 9 37 37 H 0.96996 * 119.99823 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1914 2.1943 -1.1277 5 6 2.6458 3.3546 -0.7292 6 6 2.7679 3.3211 0.6638 7 6 2.3758 2.0969 1.0867 8 6 2.3446 1.6184 2.5154 9 7 3.5822 0.8852 2.8133 10 6 4.7452 1.7822 2.7855 11 6 3.4845 0.1897 4.1036 12 1 3.3099 0.9173 4.8962 13 6 2.3231 -0.8054 4.0598 14 6 4.7697 -0.5490 4.3746 15 1 5.5784 -0.5058 3.6601 16 6 4.9132 -1.2800 5.5349 17 7 3.9282 -1.3330 6.4047 18 14 6.5065 -2.1952 5.8712 19 1 7.6329 -1.2284 5.9147 20 1 6.4073 -2.8993 7.1748 21 1 6.7459 -3.1858 4.7910 22 1 -0.3634 0.4356 -0.9307 23 1 -0.3633 -1.0239 0.0881 24 1 -0.3633 0.5883 0.8426 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.8818 4.1947 -1.3655 28 1 3.1135 4.1295 1.2910 29 1 2.2600 2.4752 3.1839 30 1 1.4883 0.9595 2.6593 31 1 4.6634 2.5082 3.5945 32 1 5.6572 1.1987 2.9118 33 1 4.7778 2.3053 1.8298 34 1 2.4977 -1.5330 3.2673 35 1 2.2509 -1.3217 5.0171 36 1 1.3937 -0.2707 3.8640 37 1 4.0290 -1.8476 7.2207 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132282948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = 81.227385 kcal Electronic energy + Delta-G solvation = -17407.965069 eV Core-core repulsion = 14801.296235 eV Total energy + Delta-G solvation = -2606.668834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93148 -36.99881 -34.20383 -33.01327 -30.69708 -29.21093 -28.89585 -26.83867 -24.70890 -23.62352 -23.08725 -20.70755 -19.80538 -19.02600 -16.57248 -16.09276 -15.44997 -14.76990 -14.61607 -14.13505 -13.83695 -13.71781 -13.34636 -12.95071 -12.58592 -12.25523 -12.03869 -11.92705 -11.79462 -11.16014 -11.12899 -11.03491 -10.77041 -10.64938 -10.30429 -10.21374 -10.11256 -9.90868 -9.05996 -8.87943 -8.47900 -8.17420 -7.29461 -6.06673 -4.11347 2.21683 2.84311 3.14252 3.29269 3.33731 3.36860 4.37097 4.81216 4.93923 5.10015 5.19078 5.23447 5.26829 5.44651 5.54081 5.74789 5.83570 5.99201 6.00168 6.09606 6.16341 6.22127 6.37688 6.51496 6.72741 6.77910 6.92677 6.98104 7.05230 7.36114 7.42520 7.60977 7.77022 8.04911 8.11009 8.23740 8.49911 8.94624 9.53986 11.00134 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033683 B = 0.006514 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.072423 B = 4297.554202 C = 4655.187613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.355 5.355 4 N -0.311 5.311 5 C 0.041 3.959 6 C -0.285 4.285 7 C 0.119 3.881 8 C 0.103 3.897 9 N -0.532 5.532 10 C 0.036 3.964 11 C 0.213 3.787 12 H 0.001 0.999 13 C -0.135 4.135 14 C -0.505 4.505 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.140 0.860 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 5.034 -8.896 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.138 5.138 4 N -0.132 5.132 5 C -0.145 4.145 6 C -0.315 4.315 7 C -0.010 4.010 8 C -0.027 4.027 9 N -0.258 5.258 10 C -0.112 4.112 11 C 0.107 3.893 12 H 0.018 0.982 13 C -0.193 4.193 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.193 0.807 28 H 0.158 0.842 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.301 3.721 -10.073 11.976 hybrid contribution 1.007 0.642 1.569 1.972 sum -4.294 4.364 -8.504 10.479 Atomic orbital electron populations 1.22159 0.94815 1.02824 1.02661 1.21717 0.94631 0.78128 1.05093 1.48568 1.50050 1.11623 1.03516 1.77236 1.23845 1.03297 1.08839 1.23667 0.99713 0.96066 0.95026 1.21178 1.16502 0.98760 0.95079 1.21192 0.97304 0.91702 0.90852 1.20765 0.96534 0.97685 0.87728 1.62172 1.00063 1.26938 1.36598 1.22244 0.95270 0.95134 0.98560 1.19282 0.95685 0.91649 0.82682 0.98157 1.21895 0.94792 0.99494 1.03118 1.21092 0.99309 1.29792 1.04136 0.91874 1.24920 0.96699 0.96514 0.95997 1.69869 1.31389 1.41720 1.10279 0.86571 0.83598 0.79942 0.77375 1.20302 1.21327 1.20233 0.92133 0.90655 0.92152 0.89404 0.87455 0.80701 0.84236 0.93278 0.89590 0.96747 0.90731 0.93213 0.94681 0.89398 0.97339 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.13 1.77 6.93 -4.04 -0.03 1.74 16 3 N -0.36 -5.86 3.61 -57.14 -0.21 -6.07 16 4 N -0.31 -5.19 12.58 30.62 0.39 -4.81 16 5 C 0.04 0.60 12.03 -17.37 -0.21 0.39 16 6 C -0.29 -4.43 9.60 -40.01 -0.38 -4.81 16 7 C 0.12 2.00 5.69 -82.27 -0.47 1.53 16 8 C 0.10 1.83 4.66 -4.98 -0.02 1.81 16 9 N -0.53 -11.07 4.61 -237.72 -1.10 -12.17 16 10 C 0.04 0.72 9.05 60.07 0.54 1.26 16 11 C 0.21 5.14 2.06 -68.86 -0.14 5.00 16 12 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 13 C -0.13 -3.09 8.77 37.16 0.33 -2.76 16 14 C -0.50 -13.42 7.95 -34.44 -0.27 -13.69 16 15 H 0.06 1.69 6.39 -52.49 -0.34 1.35 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.11 1.63 7.54 -51.93 -0.39 1.23 16 27 H 0.18 1.93 8.06 -52.48 -0.42 1.50 16 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.09 1.50 5.54 -51.93 -0.29 1.21 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 1.57 6.29 -51.93 -0.33 1.24 16 33 H 0.05 0.90 6.30 -51.93 -0.33 0.57 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 36 H 0.01 0.16 6.19 -51.93 -0.32 -0.16 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -28.93 299.09 -6.84 -35.77 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.67 Total: 0.57 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.37 Total: -9.58 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.29 Total: -47.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.93 -6.84 -35.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132282948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.997 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds