Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47291 * 2 1 4 4 N 1.40084 * 126.03708 * 270.28671 * 3 2 1 5 5 C 1.30834 * 108.20770 * 180.17238 * 4 3 2 6 6 C 1.39876 * 108.20073 * 359.58566 * 5 4 3 7 7 C 1.34947 * 126.04040 * 90.00121 * 3 2 1 8 8 C 1.50709 * 126.12387 * 0.03254 * 7 3 2 9 9 N 1.46900 * 109.47147 * 274.98485 * 8 7 3 10 10 C 1.46903 * 111.00081 * 293.95809 * 9 8 7 11 11 C 1.46893 * 110.99922 * 170.00044 * 9 8 7 12 12 H 1.09006 * 109.47189 * 60.00274 * 11 9 8 13 13 C 1.52995 * 109.47397 * 300.00266 * 11 9 8 14 14 C 1.50704 * 109.47029 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00319 * 0.02562 * 14 11 9 16 16 C 1.37880 * 119.99839 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00123 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99770 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47528 * 60.00147 * 18 16 14 20 20 H 1.48504 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47528 * 300.00185 * 18 16 14 22 22 H 1.09004 * 109.47306 * 300.00297 * 1 2 3 23 23 H 1.08999 * 109.47288 * 60.00008 * 1 2 3 24 24 H 1.08994 * 109.47482 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47581 * 239.99753 * 2 1 3 26 26 H 1.09011 * 109.47029 * 119.99691 * 2 1 3 27 27 H 1.08002 * 125.90318 * 179.85840 * 5 4 3 28 28 H 1.07992 * 126.04019 * 180.28605 * 6 5 4 29 29 H 1.08995 * 109.46794 * 34.98546 * 8 7 3 30 30 H 1.08994 * 109.46750 * 154.98809 * 8 7 3 31 31 H 1.08997 * 109.47081 * 60.00063 * 10 9 8 32 32 H 1.08998 * 109.47050 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.46930 * 299.99632 * 10 9 8 34 34 H 1.09006 * 109.46958 * 300.00150 * 13 11 9 35 35 H 1.08996 * 109.47291 * 59.99728 * 13 11 9 36 36 H 1.09005 * 109.47329 * 180.02562 * 13 11 9 37 37 H 0.96997 * 119.99911 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2877 2.1601 -1.1328 5 6 2.7083 3.3324 -0.7322 6 6 2.7112 3.3410 0.6665 7 6 2.2830 2.1297 1.0912 8 6 2.1298 1.6943 2.5258 9 7 0.7408 1.9042 2.9556 10 6 0.4101 3.3351 2.9874 11 6 0.4933 1.2774 4.2609 12 1 1.1592 1.7136 5.0055 13 6 0.7543 -0.2268 4.1621 14 6 -0.9383 1.5138 4.6681 15 1 -1.5984 2.0732 4.0218 16 6 -1.4057 1.0149 5.8655 17 7 -0.6022 0.3332 6.6524 18 14 -3.1804 1.3072 6.3700 19 1 -4.0877 0.7135 5.3554 20 1 -3.4306 0.6737 7.6896 21 1 -3.4336 2.7673 6.4664 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9985 4.1534 -1.3711 28 1 3.0034 4.1683 1.2962 29 1 2.3815 0.6375 2.6136 30 1 2.7978 2.2806 3.1567 31 1 0.5355 3.7592 1.9912 32 1 -0.6236 3.4620 3.3092 33 1 1.0729 3.8458 3.6859 34 1 0.0884 -0.6630 3.4174 35 1 1.7898 -0.3974 3.8677 36 1 0.5702 -0.6920 5.1306 37 1 -0.9309 -0.0174 7.4949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132283162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = 82.175421 kcal Electronic energy + Delta-G solvation = -17554.378914 eV Core-core repulsion = 14947.751190 eV Total energy + Delta-G solvation = -2606.627724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92616 -36.99749 -34.11818 -33.00791 -30.68975 -29.13688 -28.84212 -26.83904 -24.69148 -23.53864 -23.09340 -20.71996 -19.85340 -18.88683 -16.63892 -16.15020 -15.26256 -14.85906 -14.52467 -14.09324 -13.88046 -13.59340 -13.34886 -12.84625 -12.55851 -12.18609 -11.96663 -11.88606 -11.67179 -11.14005 -11.05584 -10.90568 -10.77202 -10.63449 -10.31766 -10.21115 -10.09728 -9.91557 -9.04661 -8.88085 -8.47822 -8.16803 -7.28563 -6.06799 -4.11447 2.22071 2.85534 3.14786 3.28879 3.33507 3.36526 4.36793 4.81749 4.93862 5.15228 5.26124 5.32600 5.33861 5.45777 5.58185 5.85497 5.97293 6.01092 6.05854 6.19137 6.23383 6.37063 6.51818 6.59924 6.73530 6.78672 6.94373 6.98572 7.06170 7.36857 7.43339 7.61497 7.76684 8.05279 8.11483 8.24091 8.49876 8.94495 9.53844 10.99973 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.006681 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.497580 B = 4190.039478 C = 4358.507957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 N -0.356 5.356 4 N -0.311 5.311 5 C 0.040 3.960 6 C -0.285 4.285 7 C 0.118 3.882 8 C 0.104 3.896 9 N -0.529 5.529 10 C 0.035 3.965 11 C 0.213 3.787 12 H 0.000 1.000 13 C -0.134 4.134 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.089 0.911 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.176 0.824 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.012 0.988 34 H 0.035 0.965 35 H 0.007 0.993 36 H 0.087 0.913 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 1.391 -9.350 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.139 5.139 4 N -0.132 5.132 5 C -0.145 4.145 6 C -0.315 4.315 7 C -0.011 4.011 8 C -0.026 4.026 9 N -0.254 5.254 10 C -0.113 4.113 11 C 0.107 3.893 12 H 0.018 0.982 13 C -0.192 4.192 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.108 0.892 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.193 0.807 28 H 0.157 0.843 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.026 0.974 36 H 0.105 0.895 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.528 0.164 -10.511 11.446 hybrid contribution -0.232 1.084 1.623 1.966 sum 4.296 1.248 -8.888 9.950 Atomic orbital electron populations 1.22198 0.93742 1.02780 1.04269 1.21590 0.96013 0.77733 1.03307 1.48619 1.50194 1.11940 1.03104 1.77240 1.22798 1.04504 1.08688 1.23666 1.00009 0.95832 0.94997 1.21172 1.16847 0.98605 0.94845 1.21185 0.97295 0.91940 0.90720 1.20755 0.92899 1.01464 0.87475 1.62152 1.17109 1.13202 1.32972 1.22267 1.01978 0.88229 0.98862 1.19266 0.96487 0.91091 0.82429 0.98222 1.21887 0.95550 0.98826 1.02978 1.21085 0.95414 1.34282 1.03498 0.91863 1.24914 0.97701 0.95109 0.96380 1.69870 1.35261 1.36413 1.11678 0.86584 0.84913 0.78417 0.77636 1.20235 1.21343 1.20327 0.89231 0.92681 0.91241 0.89824 0.89087 0.80713 0.84265 0.89698 0.93316 0.93305 0.90461 0.96932 0.94592 0.97448 0.89476 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.24 37.15 0.38 -2.10 16 2 C 0.13 1.89 6.96 -4.05 -0.03 1.86 16 3 N -0.36 -5.86 3.61 -57.14 -0.21 -6.06 16 4 N -0.31 -5.20 12.58 30.63 0.39 -4.81 16 5 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16 6 C -0.28 -4.41 9.70 -40.01 -0.39 -4.80 16 7 C 0.12 1.98 5.67 -82.26 -0.47 1.51 16 8 C 0.10 1.84 4.95 -4.97 -0.02 1.81 16 9 N -0.53 -10.78 4.50 -237.73 -1.07 -11.85 16 10 C 0.04 0.69 9.04 60.07 0.54 1.23 16 11 C 0.21 5.08 2.06 -68.87 -0.14 4.94 16 12 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 13 C -0.13 -3.05 8.77 37.15 0.33 -2.73 16 14 C -0.50 -13.25 7.88 -34.44 -0.27 -13.52 16 15 H 0.06 1.67 6.40 -52.49 -0.34 1.33 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.09 1.57 8.03 -51.93 -0.42 1.16 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.22 7.15 -51.92 -0.37 0.85 16 27 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.08 1.47 4.93 -51.93 -0.26 1.21 16 30 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 32 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 36 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -28.50 298.28 -6.78 -35.28 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.61 Total: 1.05 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.37 Total: -9.89 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.26 Total: -46.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.50 -6.78 -35.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132283162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.454 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds