Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47291 * 2 1 4 4 N 1.40084 * 126.03708 * 270.28671 * 3 2 1 5 5 C 1.30834 * 108.20770 * 180.17238 * 4 3 2 6 6 C 1.39876 * 108.20073 * 359.58566 * 5 4 3 7 7 C 1.34947 * 126.04040 * 90.00121 * 3 2 1 8 8 C 1.50709 * 126.12387 * 0.03254 * 7 3 2 9 9 N 1.46900 * 109.47147 * 274.98485 * 8 7 3 10 10 C 1.46903 * 111.00081 * 293.95809 * 9 8 7 11 11 C 1.46893 * 110.99922 * 170.00044 * 9 8 7 12 12 H 1.09006 * 109.47189 * 60.00274 * 11 9 8 13 13 C 1.52995 * 109.47397 * 300.00266 * 11 9 8 14 14 C 1.50704 * 109.47029 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00319 * 0.02562 * 14 11 9 16 16 C 1.37880 * 119.99839 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00123 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99770 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47528 * 60.00147 * 18 16 14 20 20 H 1.48504 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47528 * 300.00185 * 18 16 14 22 22 H 1.09004 * 109.47306 * 300.00297 * 1 2 3 23 23 H 1.08999 * 109.47288 * 60.00008 * 1 2 3 24 24 H 1.08994 * 109.47482 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47581 * 239.99753 * 2 1 3 26 26 H 1.09011 * 109.47029 * 119.99691 * 2 1 3 27 27 H 1.08002 * 125.90318 * 179.85840 * 5 4 3 28 28 H 1.07992 * 126.04019 * 180.28605 * 6 5 4 29 29 H 1.08995 * 109.46794 * 34.98546 * 8 7 3 30 30 H 1.08994 * 109.46750 * 154.98809 * 8 7 3 31 31 H 1.08997 * 109.47081 * 60.00063 * 10 9 8 32 32 H 1.08998 * 109.47050 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.46930 * 299.99632 * 10 9 8 34 34 H 1.09006 * 109.46958 * 300.00150 * 13 11 9 35 35 H 1.08996 * 109.47291 * 59.99728 * 13 11 9 36 36 H 1.09005 * 109.47329 * 180.02562 * 13 11 9 37 37 H 0.96997 * 119.99911 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2877 2.1601 -1.1328 5 6 2.7083 3.3324 -0.7322 6 6 2.7112 3.3410 0.6665 7 6 2.2830 2.1297 1.0912 8 6 2.1298 1.6943 2.5258 9 7 0.7408 1.9042 2.9556 10 6 0.4101 3.3351 2.9874 11 6 0.4933 1.2774 4.2609 12 1 1.1592 1.7136 5.0055 13 6 0.7543 -0.2268 4.1621 14 6 -0.9383 1.5138 4.6681 15 1 -1.5984 2.0732 4.0218 16 6 -1.4057 1.0149 5.8655 17 7 -0.6022 0.3332 6.6524 18 14 -3.1804 1.3072 6.3700 19 1 -4.0877 0.7135 5.3554 20 1 -3.4306 0.6737 7.6896 21 1 -3.4336 2.7673 6.4664 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9985 4.1534 -1.3711 28 1 3.0034 4.1683 1.2962 29 1 2.3815 0.6375 2.6136 30 1 2.7978 2.2806 3.1567 31 1 0.5355 3.7592 1.9912 32 1 -0.6236 3.4620 3.3092 33 1 1.0729 3.8458 3.6859 34 1 0.0884 -0.6630 3.4174 35 1 1.7898 -0.3974 3.8677 36 1 0.5702 -0.6920 5.1306 37 1 -0.9309 -0.0174 7.4949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132283162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = 64.644215 kcal Electronic energy + Delta-G solvation = -17555.139124 eV Core-core repulsion = 14947.751190 eV Total energy + Delta-G solvation = -2607.387934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.14407 -38.67329 -35.28460 -34.89301 -32.21064 -30.76717 -30.11911 -28.42813 -26.55417 -24.94299 -24.48103 -21.89843 -21.59377 -20.20831 -18.38660 -17.71568 -16.92147 -16.22910 -16.03313 -15.51637 -15.37822 -15.04303 -14.72485 -14.34459 -14.08186 -13.62009 -13.43006 -13.31421 -12.94669 -12.89844 -12.73439 -12.61329 -12.37406 -12.08725 -12.06589 -11.93613 -11.68092 -11.51981 -10.90504 -10.51703 -10.16100 -9.40861 -8.95878 -8.10180 -6.21001 0.96872 1.43930 1.44484 1.51970 1.70343 1.97084 2.43526 3.18691 3.41641 3.72334 3.78630 4.14033 4.22893 4.28501 4.39920 4.52766 4.62288 4.72216 4.77662 4.81206 4.89088 4.95617 5.03398 5.04487 5.10028 5.26270 5.31227 5.40026 5.52532 5.72983 5.79597 5.85994 6.16291 6.27255 6.36928 6.67874 6.87422 6.92640 7.47895 8.95306 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.006681 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.497580 B = 4190.039478 C = 4358.507957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 N -0.363 5.363 4 N -0.332 5.332 5 C 0.044 3.956 6 C -0.286 4.286 7 C 0.101 3.899 8 C 0.110 3.890 9 N -0.530 5.530 10 C 0.042 3.958 11 C 0.219 3.781 12 H -0.033 1.033 13 C -0.122 4.122 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.211 0.789 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 1.745 -10.548 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.146 5.146 4 N -0.153 5.153 5 C -0.141 4.141 6 C -0.316 4.316 7 C -0.028 4.028 8 C -0.019 4.019 9 N -0.255 5.255 10 C -0.106 4.106 11 C 0.112 3.888 12 H -0.015 1.015 13 C -0.180 4.180 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.558 5.558 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.228 0.772 28 H 0.172 0.828 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.709 0.520 -11.724 12.645 hybrid contribution -0.236 1.013 1.939 2.201 sum 4.473 1.533 -9.785 10.867 Atomic orbital electron populations 1.22089 0.94161 1.03533 1.02258 1.21766 0.95583 0.77194 1.04556 1.48820 1.50316 1.12567 1.02887 1.77220 1.23586 1.05409 1.09122 1.24253 0.98627 0.96050 0.95129 1.21459 1.16052 0.98464 0.95592 1.21088 0.98704 0.92840 0.90208 1.20673 0.91131 1.01754 0.88376 1.62060 1.19261 1.13493 1.30661 1.22179 1.00810 0.87933 0.99666 1.19047 0.94660 0.91821 0.83230 1.01539 1.21682 0.97156 0.97719 1.01423 1.21361 0.96572 1.34035 1.03606 0.92447 1.25611 1.01204 0.95007 0.96494 1.69992 1.36735 1.37140 1.11912 0.85673 0.80702 0.78340 0.77269 1.19866 1.21051 1.19933 0.92513 0.93154 0.89189 0.87815 0.88598 0.77237 0.82842 0.89468 0.93022 0.91701 0.92295 0.96845 0.94567 0.94891 0.92158 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.76 16 2 C 0.13 3.42 6.96 86.38 0.60 4.02 16 3 N -0.36 -11.31 3.61 -334.70 -1.21 -12.52 16 4 N -0.33 -10.36 12.58 -57.02 -0.72 -11.07 16 5 C 0.04 1.18 12.03 85.24 1.03 2.20 16 6 C -0.29 -8.18 9.70 21.99 0.21 -7.97 16 7 C 0.10 3.21 5.67 41.41 0.23 3.45 16 8 C 0.11 3.78 4.95 85.56 0.42 4.20 16 9 N -0.53 -21.43 4.50 -906.05 -4.08 -25.51 16 10 C 0.04 1.64 9.04 127.69 1.15 2.80 16 11 C 0.22 10.56 2.06 44.17 0.09 10.65 16 12 H -0.03 -1.78 8.14 -2.38 -0.02 -1.80 16 13 C -0.12 -5.53 8.77 71.98 0.63 -4.90 16 14 C -0.52 -27.44 7.88 25.60 0.20 -27.23 16 15 H 0.06 3.06 6.40 -2.91 -0.02 3.04 16 16 C 0.02 0.85 5.30 84.66 0.45 1.29 16 17 N -0.92 -51.26 11.32 21.45 0.24 -51.01 16 18 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H 0.06 1.96 8.03 -2.38 -0.02 1.94 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.10 2.41 7.15 -2.38 -0.02 2.39 16 27 H 0.21 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.09 2.92 4.93 -2.39 -0.01 2.90 16 30 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.06 2.28 6.55 -2.39 -0.02 2.26 16 32 H 0.06 2.48 6.10 -2.39 -0.01 2.46 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.03 1.28 6.20 -2.39 -0.01 1.27 16 36 H 0.06 3.09 6.07 -2.38 -0.01 3.07 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -60.22 298.28 3.07 -57.16 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.04 Total: 13.39 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 5.76 Total: -15.25 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -5.76 Total: -100.12 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -60.22 3.07 -57.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132283162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.801 kcal (2) G-P(sol) polarization free energy of solvation -60.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds