Wall clock time and date at job start Sun Mar 29 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48498 * 109.47304 * 239.99862 * 3 2 1 5 5 H 1.48505 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47004 * 119.99705 * 3 2 1 7 7 C 1.37880 * 120.00694 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99400 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46713 * 180.02562 * 9 7 2 11 11 C 1.48554 * 111.00333 * 285.41993 * 10 9 7 12 12 C 1.54373 * 104.59671 * 200.96149 * 11 10 9 13 13 C 1.54260 * 105.06180 * 23.85301 * 12 11 10 14 14 C 1.48558 * 110.99638 * 170.00102 * 10 9 7 15 15 H 1.08994 * 110.41503 * 40.25935 * 14 10 9 16 16 C 1.53000 * 110.41119 * 277.81777 * 14 10 9 17 17 C 1.53004 * 109.47371 * 302.83594 * 16 14 10 18 18 C 1.53000 * 109.47371 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46964 * 60.00004 * 18 17 16 20 20 C 1.52995 * 109.47099 * 299.99988 * 19 18 17 21 21 C 1.53000 * 109.47203 * 60.00158 * 20 19 18 22 22 H 0.97002 * 120.00664 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46975 * 60.00527 * 9 7 2 24 24 H 1.09003 * 109.47098 * 299.99990 * 9 7 2 25 25 H 1.09004 * 110.40816 * 319.74084 * 11 10 9 26 26 H 1.09002 * 110.41181 * 82.17939 * 11 10 9 27 27 H 1.08999 * 110.32566 * 264.95819 * 12 11 10 28 28 H 1.09003 * 110.41272 * 142.78998 * 12 11 10 29 29 H 1.09007 * 110.32329 * 241.10499 * 13 12 11 30 30 H 1.08998 * 110.41452 * 118.93886 * 13 12 11 31 31 H 1.09003 * 109.47249 * 62.84139 * 16 14 10 32 32 H 1.08997 * 109.47231 * 300.00033 * 17 16 14 33 33 H 1.08995 * 109.46686 * 60.00018 * 17 16 14 34 34 H 1.09003 * 109.47249 * 300.00544 * 18 17 16 35 35 H 1.08993 * 109.47452 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46933 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47123 * 60.00282 * 19 18 17 38 38 H 1.09003 * 109.47521 * 299.99709 * 20 19 18 39 39 H 1.09003 * 109.47305 * 180.02562 * 20 19 18 40 40 H 1.09007 * 109.47220 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46970 * 59.99737 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 2.8321 -3.7806 -1.3375 12 6 3.3499 -5.2349 -1.3477 13 6 2.4826 -5.9765 -0.3097 14 6 1.5137 -4.9079 0.2403 15 1 0.5674 -4.9387 -0.2997 16 6 1.2819 -5.1180 1.7379 17 6 2.6217 -5.0602 2.4745 18 6 2.3898 -5.2697 3.9723 19 6 1.7404 -6.6360 4.2015 20 6 0.4006 -6.6938 3.4650 21 6 0.6325 -6.4843 1.9673 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.0921 -3.6350 -2.1245 26 1 3.6596 -3.0816 -1.4585 27 1 4.3994 -5.2652 -1.0549 28 1 3.2201 -5.6778 -2.3352 29 1 3.1065 -6.3708 0.4926 30 1 1.9256 -6.7831 -0.7864 31 1 0.6246 -4.3355 2.1172 32 1 3.2789 -5.8427 2.0953 33 1 3.0841 -4.0867 2.3115 34 1 1.7327 -4.4869 4.3512 35 1 3.3442 -5.2280 4.4970 36 1 1.5748 -6.7850 5.2685 37 1 2.3975 -7.4187 3.8226 38 1 -0.2565 -5.9110 3.8440 39 1 -0.0623 -7.6670 3.6287 40 1 -0.3220 -6.5259 1.4425 41 1 1.2895 -7.2671 1.5884 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134012483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:32 Heat of formation + Delta-G solvation = -28.479555 kcal Electronic energy + Delta-G solvation = -17936.552888 eV Core-core repulsion = 15428.667148 eV Total energy + Delta-G solvation = -2507.885740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31181 -36.91637 -33.08107 -31.38688 -30.85848 -30.37695 -26.69111 -26.27536 -22.82668 -22.27939 -21.93125 -20.40923 -19.63295 -18.27672 -16.27537 -15.37380 -15.18061 -14.58545 -14.09098 -13.98912 -13.87345 -13.42862 -13.24580 -12.76999 -12.07695 -11.87771 -11.78340 -11.69777 -11.42215 -11.24478 -10.94219 -10.83211 -10.67749 -10.59683 -10.43737 -10.27887 -10.17094 -9.85511 -9.62844 -9.59784 -9.52335 -9.11945 -8.37952 -7.30061 -5.98448 -3.99287 3.35767 3.39475 3.42727 4.45847 4.83351 4.98183 5.06568 5.18103 5.25832 5.35000 5.38464 5.54163 5.61537 5.67782 5.80689 5.84099 5.86758 5.92586 5.93953 6.04193 6.06812 6.22427 6.25938 6.28793 6.33659 6.41286 6.50698 6.54589 6.61666 6.69468 6.70076 6.76177 6.98929 7.02775 7.27102 7.36980 7.84473 8.07907 8.24892 8.58298 9.08591 9.64682 11.12483 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.007177 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.473691 B = 3900.597446 C = 4462.401390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.184 3.816 10 N -0.499 5.499 11 C 0.045 3.955 12 C -0.126 4.126 13 C -0.121 4.121 14 C 0.064 3.936 15 H 0.038 0.962 16 C -0.067 4.067 17 C -0.103 4.103 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.113 4.113 22 H 0.261 0.739 23 H -0.010 1.010 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -13.477 3.613 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.058 3.942 10 N -0.223 5.223 11 C -0.083 4.083 12 C -0.164 4.164 13 C -0.159 4.159 14 C -0.045 4.045 15 H 0.056 0.944 16 C -0.086 4.086 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.151 4.151 22 H 0.070 0.930 23 H 0.008 0.992 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.518 -13.207 4.028 14.248 hybrid contribution -0.367 0.890 -0.700 1.190 sum 3.151 -12.317 3.328 13.142 Atomic orbital electron populations 1.69946 1.06040 1.26759 1.51267 1.24984 0.94837 0.99234 0.95591 0.86585 0.79446 0.82895 0.78612 1.20339 1.21415 1.20208 1.21103 0.93440 0.89929 1.49680 0.92061 1.19854 0.90295 0.87986 0.96030 1.65393 1.29622 1.01889 1.25407 1.22892 0.98953 0.94800 0.91661 1.22326 0.99622 0.96348 0.98109 1.22419 0.97807 0.97260 0.98400 1.22572 0.95423 0.91395 0.95147 0.94357 1.20956 0.97187 0.96137 0.94348 1.21481 0.96836 1.02966 0.92794 1.21582 0.99962 0.96670 0.97709 1.21523 0.96789 0.97932 0.99181 1.21510 0.97252 1.00878 0.95868 1.21586 1.00230 0.97741 0.95566 0.92964 0.99173 0.95240 0.94889 0.90724 0.91887 0.92596 0.90980 0.92715 0.91162 0.92700 0.89988 0.92185 0.92694 0.92864 0.92483 0.92133 0.92749 0.92609 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -14.33 8.97 -34.44 -0.31 -14.64 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.18 4.85 4.54 -4.97 -0.02 4.83 16 10 N -0.50 -10.78 4.19 -223.57 -0.94 -11.71 16 11 C 0.05 0.89 6.12 -2.19 -0.01 0.88 16 12 C -0.13 -1.95 7.00 -25.35 -0.18 -2.13 16 13 C -0.12 -1.82 5.33 -25.35 -0.14 -1.96 16 14 C 0.06 1.15 2.09 -66.07 -0.14 1.02 16 15 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 16 C -0.07 -1.11 2.10 -90.62 -0.19 -1.30 16 17 C -0.10 -1.63 4.76 -26.73 -0.13 -1.75 16 18 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 19 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 20 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 21 C -0.11 -1.53 5.00 -26.73 -0.13 -1.66 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H -0.01 -0.27 7.77 -51.93 -0.40 -0.67 16 24 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 25 H 0.03 0.68 7.75 -51.93 -0.40 0.28 16 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.03 5.52 -51.92 -0.29 0.74 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.35 7.34 -51.93 -0.38 0.96 16 32 H 0.05 0.81 6.02 -51.93 -0.31 0.49 16 33 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.75 7.23 -51.93 -0.38 0.38 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -29.21 307.55 -9.94 -39.16 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.54 Total: -2.45 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.82 Total: -20.20 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.20 Total: -38.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.21 -9.94 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134012483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.678 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds