Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48498 * 109.47304 * 239.99862 * 3 2 1 5 5 H 1.48505 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47004 * 119.99705 * 3 2 1 7 7 C 1.37880 * 120.00694 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99400 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46713 * 180.02562 * 9 7 2 11 11 C 1.48554 * 111.00333 * 285.41993 * 10 9 7 12 12 C 1.54373 * 104.59671 * 200.96149 * 11 10 9 13 13 C 1.54260 * 105.06180 * 23.85301 * 12 11 10 14 14 C 1.48558 * 110.99638 * 170.00102 * 10 9 7 15 15 H 1.08994 * 110.41503 * 40.25935 * 14 10 9 16 16 C 1.53000 * 110.41119 * 277.81777 * 14 10 9 17 17 C 1.53004 * 109.47371 * 302.83594 * 16 14 10 18 18 C 1.53000 * 109.47371 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46964 * 60.00004 * 18 17 16 20 20 C 1.52995 * 109.47099 * 299.99988 * 19 18 17 21 21 C 1.53000 * 109.47203 * 60.00158 * 20 19 18 22 22 H 0.97002 * 120.00664 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46975 * 60.00527 * 9 7 2 24 24 H 1.09003 * 109.47098 * 299.99990 * 9 7 2 25 25 H 1.09004 * 110.40816 * 319.74084 * 11 10 9 26 26 H 1.09002 * 110.41181 * 82.17939 * 11 10 9 27 27 H 1.08999 * 110.32566 * 264.95819 * 12 11 10 28 28 H 1.09003 * 110.41272 * 142.78998 * 12 11 10 29 29 H 1.09007 * 110.32329 * 241.10499 * 13 12 11 30 30 H 1.08998 * 110.41452 * 118.93886 * 13 12 11 31 31 H 1.09003 * 109.47249 * 62.84139 * 16 14 10 32 32 H 1.08997 * 109.47231 * 300.00033 * 17 16 14 33 33 H 1.08995 * 109.46686 * 60.00018 * 17 16 14 34 34 H 1.09003 * 109.47249 * 300.00544 * 18 17 16 35 35 H 1.08993 * 109.47452 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46933 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47123 * 60.00282 * 19 18 17 38 38 H 1.09003 * 109.47521 * 299.99709 * 20 19 18 39 39 H 1.09003 * 109.47305 * 180.02562 * 20 19 18 40 40 H 1.09007 * 109.47220 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46970 * 59.99737 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 2.8321 -3.7806 -1.3375 12 6 3.3499 -5.2349 -1.3477 13 6 2.4826 -5.9765 -0.3097 14 6 1.5137 -4.9079 0.2403 15 1 0.5674 -4.9387 -0.2997 16 6 1.2819 -5.1180 1.7379 17 6 2.6217 -5.0602 2.4745 18 6 2.3898 -5.2697 3.9723 19 6 1.7404 -6.6360 4.2015 20 6 0.4006 -6.6938 3.4650 21 6 0.6325 -6.4843 1.9673 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.0921 -3.6350 -2.1245 26 1 3.6596 -3.0816 -1.4585 27 1 4.3994 -5.2652 -1.0549 28 1 3.2201 -5.6778 -2.3352 29 1 3.1065 -6.3708 0.4926 30 1 1.9256 -6.7831 -0.7864 31 1 0.6246 -4.3355 2.1172 32 1 3.2789 -5.8427 2.0953 33 1 3.0841 -4.0867 2.3115 34 1 1.7327 -4.4869 4.3512 35 1 3.3442 -5.2280 4.4970 36 1 1.5748 -6.7850 5.2685 37 1 2.3975 -7.4187 3.8226 38 1 -0.2565 -5.9110 3.8440 39 1 -0.0623 -7.6670 3.6287 40 1 -0.3220 -6.5259 1.4425 41 1 1.2895 -7.2671 1.5884 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134012483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = -44.921804 kcal Electronic energy + Delta-G solvation = -17937.265877 eV Core-core repulsion = 15428.667148 eV Total energy + Delta-G solvation = -2508.598730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71051 -38.25189 -35.18479 -32.79750 -32.50805 -31.50606 -28.36747 -27.99654 -24.58336 -23.61061 -23.28531 -21.74878 -21.05769 -19.63320 -18.44845 -16.96465 -16.73093 -16.09518 -15.69931 -15.31404 -14.98862 -14.85397 -14.65642 -14.49456 -13.88707 -13.42968 -13.25550 -12.94014 -12.81937 -12.73589 -12.56233 -12.41156 -12.23418 -12.02900 -11.92264 -11.82700 -11.57999 -11.37632 -11.26463 -10.98929 -10.79724 -10.70795 -10.61532 -9.12441 -8.22655 -6.33319 1.37269 1.41242 1.49170 2.37915 3.09092 3.35542 3.72569 3.85899 3.99500 4.04574 4.11782 4.25509 4.35489 4.48983 4.56015 4.59941 4.69790 4.73355 4.75612 4.80200 4.89970 4.92230 5.02491 5.07095 5.07886 5.14739 5.21182 5.22315 5.28369 5.35474 5.40053 5.44709 5.46277 5.50743 5.62691 5.73069 5.73954 6.04005 6.30546 6.56892 6.82830 7.36626 8.88461 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.007177 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.473691 B = 3900.597446 C = 4462.401390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.205 3.795 10 N -0.505 5.505 11 C 0.038 3.962 12 C -0.114 4.114 13 C -0.110 4.110 14 C 0.057 3.943 15 H 0.017 0.983 16 C -0.065 4.065 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.106 4.106 22 H 0.264 0.736 23 H -0.045 1.045 24 H -0.003 1.003 25 H 0.015 0.985 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -15.454 3.972 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.229 5.229 11 C -0.090 4.090 12 C -0.152 4.152 13 C -0.148 4.148 14 C -0.052 4.052 15 H 0.035 0.965 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.144 4.144 22 H 0.073 0.927 23 H -0.027 1.027 24 H 0.015 0.985 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.275 -15.204 4.386 16.681 hybrid contribution -0.953 1.511 -0.825 1.968 sum 4.322 -13.693 3.561 14.794 Atomic orbital electron populations 1.70086 1.07806 1.27945 1.51843 1.25953 0.95761 1.03304 0.94769 0.85427 0.78176 0.77812 0.79153 1.19143 1.20650 1.19313 1.21410 0.93490 0.91166 1.49983 0.92203 1.19426 0.90221 0.89830 0.92751 1.65326 1.28566 1.02256 1.26767 1.22966 0.97996 0.98096 0.89956 1.22292 1.00322 0.92796 0.99809 1.22406 0.97131 0.96463 0.98788 1.22744 0.95281 0.90817 0.96356 0.96498 1.20920 0.97332 0.97001 0.93149 1.21386 0.96089 1.01491 0.94435 1.21572 1.00544 0.97710 0.96050 1.21498 0.96372 0.96641 1.00290 1.21528 0.97638 1.01691 0.94635 1.21543 1.00150 0.95825 0.96910 0.92696 1.02706 0.98461 0.96712 0.91823 0.90210 0.90071 0.89237 0.90101 0.95494 0.90636 0.93810 0.94244 0.91319 0.91225 0.90703 0.93714 0.90211 0.92962 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.54 13.29 21.45 0.28 -58.25 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.52 -31.08 8.97 25.60 0.23 -30.85 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 9 C 0.20 11.58 4.54 85.56 0.39 11.97 16 10 N -0.51 -22.82 4.19 -861.25 -3.61 -26.43 16 11 C 0.04 1.53 6.12 86.45 0.53 2.06 16 12 C -0.11 -3.26 7.00 31.49 0.22 -3.04 16 13 C -0.11 -3.02 5.33 31.49 0.17 -2.85 16 14 C 0.06 2.10 2.09 45.06 0.09 2.19 16 15 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 16 C -0.06 -2.20 2.10 -10.79 -0.02 -2.22 16 17 C -0.10 -3.00 4.76 30.60 0.15 -2.86 16 18 C -0.12 -3.20 5.92 30.60 0.18 -3.02 16 19 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 20 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 21 C -0.11 -2.71 5.00 30.59 0.15 -2.56 16 22 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 23 H -0.04 -2.77 7.77 -2.39 -0.02 -2.79 16 24 H 0.00 -0.17 7.20 -2.39 -0.02 -0.18 16 25 H 0.01 0.63 7.75 -2.38 -0.02 0.61 16 26 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.18 5.52 -2.38 -0.01 2.16 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.12 7.34 -2.39 -0.02 1.10 16 32 H 0.08 2.02 6.02 -2.39 -0.01 2.00 16 33 H 0.04 1.68 7.57 -2.39 -0.02 1.66 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.08 1.75 7.23 -2.39 -0.02 1.73 16 Total: -1.00 -66.99 307.55 2.58 -64.41 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.96 Total: 7.73 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 2.91 Total: -35.28 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.32 Total: -84.68 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -66.99 2.58 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134012483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.492 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds